Rw2G002190

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018606
Physical Location & Seq
Forward (+)
1827715 .. 1830040
2326 bp
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UTR
Exon/CDS
Intron
Rw2G002190.1

Sequence Viewer

Length: 807 bp
ATGGGATCAGTTTGTTCATGTTTCACTCAAGGCAAGGCTGTCCAGACCCAGATGGAAATCGAAAACTTGGGTTTGAACATGAAGGATACTACAGCGGAAAAGGAAGATTTGAGAAAGATTCATGCCAAGATTGTGGAGCAGGAAGAGATCTTTGTGAAGGAGAGAGCTAAATGGGAAGCTGAAAACAGGTGTCGCTACAACAAGAATGAGTTTTTTATCAACAGATGTCGTTGGGAAGCAGAATATAAGAAACGACACTTTCAGAGTGTATATGAAGATAGAAGGAAGGCTGTTAAAGATGTCCCTTGCTTTTGGGTTACAGCAATGTATGCTAACAAGATAATCCGTAAGGAGATTGCGAAGCACGATGAAGATGCTCGCGAATTCCTGAAGGATATCAAGTCATGTAGGACAGATGATCTAAAAGGATTCCAGCTGGAATTCATGTTTGATTCTTCCAATCCTTATTTCAAAAATGAGGTCCTCACCAAAAAGTATGAGCTGAAGGATGGCGGAGAGTGTACATTCTTGATGGCAATTGGGACGGAAATCAACTGGTATCCTGGCAAAACCTTGACAGAAAGTATTGAGAAAATGACCATTGGATCTGAGGTTGTTCAAGTAGCCCAAACATGTCAAAGTTTCTTCAACTTCTTTGCTACGAAAACTCATCGGACTTCTCTTTGTTTGGATGAAGATGCTGTAAGTTTGGATTCGTATATGGTACTTAGGTTGTTCAGTTTAGTTAATAATGATGTTAAGCTAGCTTTCCTAATATCTTTTAATGGATGCACTATGTCAGGATAA

Protein Analysis

268

Amino Acids

31.27

Weight (kDa)

6.48

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 36 - 227 2.9e-33 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018606)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0062051
rosa_laevigata RLG00000035528
rosa_multiflora Rmu_sc0003367.1_g000023 Rmu_sc0017669.1_g000010
rosa_roxburghii Rroxscaffold_2G00153690
rosa_rugosa Rorug05G0345800
rosa_samantha Rh2AG027700 Rh2CG028000 Rh2DG027800
rosa_wichuraiana Rw2G002190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 381
AciI CCGC 2 cut(s) 95, 513
AclWI GGATC 2 cut(s) 13, 613
AcsI RAATTY 2 cut(s) 383, 440
AcuI CTGAAG 2 cut(s) 410, 524
AfaI GTAC 2 cut(s) 523, 726
AflIII ACRYGT 1 cut(s) 632
AgsI TTSAA 4 cut(s) 76, 472, 620, 649
AjnI CCWGG 1 cut(s) 562
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AluBI AGCT 6 cut(s) 167, 179, 436, 502, 763, 767
AluI AGCT 6 cut(s) 167, 179, 436, 502, 763, 767
AlwI GGATC 2 cut(s) 13, 613
ApoI RAATTY 2 cut(s) 383, 440
ArsI GACNNNNNNTTYG 2 cut(s) 465, 497
AspS9I GGNCC 1 cut(s) 481
AsuHPI GGTGA 1 cut(s) 478
AsuNHI GCTAGC 1 cut(s) 763
AvaII GGWCC 1 cut(s) 481
BaeI ACNNNNGTAYC 2 cut(s) 716, 749
BccI CCATC 3 cut(s) 46, 503, 526
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 1 cut(s) 564
BciVI GTATCC 2 cut(s) 79, 570
BfaI CTAG 1 cut(s) 764
BfmI CTRYAG 1 cut(s) 90
BfuI GTATCC 2 cut(s) 79, 570
BglII AGATCT 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 564
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 481
BmrFI CCNGG 1 cut(s) 564
BmsI GCATC 3 cut(s) 364, 688, 779
BmtI GCTAGC 1 cut(s) 767
BpuEI CTTGAG 1 cut(s) 12
BsaBI GATNNNNATC 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 560
Bse3DI GCAATG 1 cut(s) 330
Bse8I GATNNNNATC 1 cut(s) 56
BseBI CCWGG 1 cut(s) 564
BseGI GGATG 3 cut(s) 514, 697, 794
BseJI GATNNNNATC 1 cut(s) 56
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 1 cut(s) 560
Bsh1236I CGCG 1 cut(s) 381
BslFI GGGAC 2 cut(s) 287, 556
BsmFI GGGAC 2 cut(s) 287, 556
Bsp1407I TGTACA 1 cut(s) 521
Bsp143I GATC 4 cut(s) 5, 147, 418, 605
Bsp68I TCGCGA 1 cut(s) 381
BspACI CCGC 2 cut(s) 95, 513
BspCNI CTCAG 1 cut(s) 601
BspFNI CGCG 1 cut(s) 381
BspOI GCTAGC 1 cut(s) 767
BspPI GGATC 2 cut(s) 13, 613
BsrDI GCAATG 1 cut(s) 330
BsrGI TGTACA 1 cut(s) 521
BsrI ACTGG 1 cut(s) 560
BssMI GATC 4 cut(s) 5, 147, 418, 605
Bst2UI CCWGG 1 cut(s) 564
Bst6I CTCTTC 1 cut(s) 138
BstAPI GCANNNNNTGC 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 521
BstC8I GCNNGC 2 cut(s) 379, 765
BstDEI CTNAG 2 cut(s) 609, 728
BstF5I GGATG 3 cut(s) 514, 697, 794
BstFNI CGCG 1 cut(s) 381
BstKTI GATC 4 cut(s) 8, 150, 421, 608
BstMBI GATC 4 cut(s) 5, 147, 418, 605
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 1 cut(s) 564
BstNSI RCATGY 1 cut(s) 636
BstSCI CCNGG 1 cut(s) 562
BstSFI CTRYAG 1 cut(s) 90
BstUI CGCG 1 cut(s) 381
BstX2I RGATCY 2 cut(s) 147, 605
BstXI CCANNNNNNTGG 1 cut(s) 133
BstYI RGATCY 2 cut(s) 147, 605
BsuI GTATCC 2 cut(s) 79, 570
BtsCI GGATG 3 cut(s) 514, 697, 794
BtuMI TCGCGA 1 cut(s) 381
Cac8I GCNNGC 2 cut(s) 379, 765
Cfr13I GGNCC 1 cut(s) 481
Csp6I GTAC 2 cut(s) 522, 725
CviAII CATG 6 cut(s) 18, 79, 122, 405, 445, 633
CviJI RGCY 9 cut(s) 38, 167, 179, 290, 436, 502, 626, 763, 767
CviKI_1 RGCY 9 cut(s) 38, 167, 179, 290, 436, 502, 626, 763, 767
CviQI GTAC 2 cut(s) 522, 725
DdeI CTNAG 2 cut(s) 609, 728
DpnI GATC 4 cut(s) 7, 149, 420, 607
DpnII GATC 4 cut(s) 5, 147, 418, 605
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 528
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 481
Eco57I CTGAAG 2 cut(s) 410, 524
EcoO109I RGGNCCY 1 cut(s) 481
EcoRI GAATTC 2 cut(s) 383, 440
EcoRII CCWGG 1 cut(s) 562
EcoRV GATATC 1 cut(s) 397
FaeI CATG 6 cut(s) 21, 82, 125, 408, 448, 636
FaqI GGGAC 2 cut(s) 287, 556
FatI CATG 6 cut(s) 17, 78, 121, 404, 444, 632
FokI GGATG 3 cut(s) 521, 704, 801
FspBI CTAG 1 cut(s) 764
Hin1II CATG 6 cut(s) 21, 82, 125, 408, 448, 636
HinfI GANTC 4 cut(s) 118, 429, 452, 713
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 1 cut(s) 522
Hpy188I TCNGA 3 cut(s) 264, 610, 675
Hpy188III TCNNGA 5 cut(s) 43, 380, 388, 529, 801
Hpy8I GTNNAC 1 cut(s) 522
HpyAV CCTTC 6 cut(s) 76, 151, 276, 280, 385, 499
HpyCH4V TGCA 1 cut(s) 792
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 2 cut(s) 609, 728
Hsp92II CATG 6 cut(s) 21, 82, 125, 408, 448, 636
Kzo9I GATC 4 cut(s) 5, 147, 418, 605
LmnI GCTCC 1 cut(s) 136
LweI GCATC 3 cut(s) 364, 688, 779
MaeI CTAG 1 cut(s) 764
MaeIII GTNAC 1 cut(s) 316
MalI GATC 4 cut(s) 7, 149, 420, 607
MboI GATC 4 cut(s) 5, 147, 418, 605
MboII GAAGA 7 cut(s) 116, 155, 287, 383, 447, 637, 707
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 2 cut(s) 147, 605
MluCI AATT 3 cut(s) 383, 440, 537
MnlI CCTC 3 cut(s) 472, 494, 604
MseI TTAA 4 cut(s) 294, 747, 759, 783
MspA1I CMGCKG 2 cut(s) 95, 436
MspR9I CCNGG 1 cut(s) 564
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 1 cut(s) 564
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeII GATC 4 cut(s) 5, 147, 418, 605
NheI GCTAGC 1 cut(s) 763
NlaIII CATG 6 cut(s) 21, 82, 125, 408, 448, 636
NruI TCGCGA 1 cut(s) 381
NspI RCATGY 1 cut(s) 636
PciI ACATGT 1 cut(s) 632
PfeI GAWTC 4 cut(s) 118, 429, 452, 713
PpuMI RGGWCCY 1 cut(s) 481
PscI ACATGT 1 cut(s) 632
Psp5II RGGWCCY 1 cut(s) 481
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspPI GGNCC 1 cut(s) 481
PspPPI RGGWCCY 1 cut(s) 481
PsuI RGATCY 2 cut(s) 147, 605
PvuII CAGCTG 1 cut(s) 436
RruI TCGCGA 1 cut(s) 381
RsaI GTAC 2 cut(s) 523, 726
RsaNI GTAC 2 cut(s) 522, 725
SaqAI TTAA 4 cut(s) 294, 747, 759, 783
Sau3AI GATC 4 cut(s) 5, 147, 418, 605
Sau96I GGNCC 1 cut(s) 481
ScrFI CCNGG 1 cut(s) 564
SfaNI GCATC 3 cut(s) 364, 688, 779
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 3 cut(s) 383, 440, 537
SsiI CCGC 2 cut(s) 95, 513
SspMI CTAG 1 cut(s) 764
StyD4I CCNGG 1 cut(s) 562
TaqI TCGA 1 cut(s) 60
TasI AATT 3 cut(s) 383, 440, 537
TatI WGTACW 1 cut(s) 521
TfiI GAWTC 4 cut(s) 118, 429, 452, 713
Tru1I TTAA 4 cut(s) 294, 747, 759, 783
Tru9I TTAA 4 cut(s) 294, 747, 759, 783
TspDTI ATGAA 7 cut(s) 6, 95, 110, 288, 384, 433, 708
TspGWI ACGGA 2 cut(s) 335, 560
VpaK11BI GGWCC 1 cut(s) 481
XapI RAATTY 2 cut(s) 383, 440
XceI RCATGY 1 cut(s) 636
XspI CTAG 1 cut(s) 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.