RchiOBHm_Chr5g0070141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015837
Physical Location & Seq
Reverse (-)
75949449 .. 75950924
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
ATGACTACTTGTTCATATCGATCATCATGTCATTATCTCATTTTCTTCTTCTTCCTAATCCTCTTGGGCTTGGCTTCAACCTCCTCCGCCACCTTCATTTCCTATGGTATATTTGAGCCTCCTCGTGGATCCTTTGGACGTTCCCTTCTTCAAACCAAAAAAAATTGCCCTGTGAACTTTGAGAATCAGAACTACACAATCCTTACAAGCACGTGCAAGGGACCAAATTACCCACCCAAAATCTGTTGTGAAGCTTTCAAGAAATTTGCCTGCCCTTTTGCAGATCAGATTAGTGACGAAAAAAGTGATTGCGCTGCAACCATGTTTAGCTACATAAACATCTATGGGAAATACCCTCCTGGCCTGTTTTCATCTCAATGTCGTGAAGAAAATAAAATTGGTCTTAAATGTGCTGATGCTGAGCCACCAAAACCCAGCACAGCTTCCACGGTGATGGCCGCATCAGCTACTCACTTAGCACTCACCACTGCCTTCCTATTATTATCTTTACATTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0016020 GO:0031224 GO:0031225 GO:0042995 GO:0044425 GO:0044464 GO:0090406 GO:0120025
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.12

Weight (kDa)

8.51

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LLG1 PF26578 58 - 132 1.5e-36 LLG1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015837)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20700
fragaria_vesca FvH4_3g38900
malus_domestica MD09G1248000.v1.1 MD17G1240900.v1.1
prunus_persica Prupe.3G137300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0070141
rosa_laevigata RLG00000036115
rosa_multiflora Rmu_sc0002109.1_g000010
rosa_roxburghii Rroxscaffold_1G00010980
rosa_rugosa Rorug05G0403000
rosa_samantha Rh5AG459100 Rh5BG477700 Rh5CG501700 Rh5DG489700
rosa_wichuraiana Rw5G042830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 87, 459
AclWI GGATC 2 cut(s) 123, 136
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 1 cut(s) 263
AcvI CACGTG 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 3 cut(s) 78, 152, 259
AjnI CCWGG 1 cut(s) 358
AjuI GAANNNNNNNTTGG 2 cut(s) 381, 413
AluBI AGCT 4 cut(s) 254, 330, 443, 467
AluI AGCT 4 cut(s) 254, 330, 443, 467
AlwI GGATC 2 cut(s) 123, 136
AoxI GGCC 2 cut(s) 361, 456
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 263
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 463, 475
AvaII GGWCC 1 cut(s) 221
BamHI GGATCC 1 cut(s) 128
BauI CACGAG 1 cut(s) 123
BbrPI CACGTG 1 cut(s) 213
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 448
BciT130I CCWGG 1 cut(s) 360
BisI GCNGC 2 cut(s) 315, 459
BlpI GCTNAGC 1 cut(s) 420
BlsI GCNGC 2 cut(s) 316, 460
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 2 cut(s) 130, 222
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 2 cut(s) 406, 470
Bpu1102I GCTNAGC 1 cut(s) 420
Bsa29I ATCGAT 1 cut(s) 19
BsaAI YACGTR 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 447
Bsc4I CCNNNNNNNGG 1 cut(s) 125
BseBI CCWGG 1 cut(s) 360
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 447
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 411
BseRI GAGGAG 2 cut(s) 73, 111
BseXI GCAGC 1 cut(s) 301
BseYI CCCAGC 1 cut(s) 434
BshFI GGCC 2 cut(s) 363, 458
BshVI ATCGAT 1 cut(s) 19
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 2 cut(s) 363, 458
Bsp143I GATC 3 cut(s) 20, 128, 283
Bsp1720I GCTNAGC 1 cut(s) 420
BspACI CCGC 2 cut(s) 87, 459
BspANI GGCC 2 cut(s) 363, 458
BspCNI CTCAG 1 cut(s) 412
BspDI ATCGAT 1 cut(s) 19
BspLI GGNNCC 2 cut(s) 130, 222
BspPI GGATC 2 cut(s) 123, 136
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 3 cut(s) 20, 128, 283
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 451
BstBAI YACGTR 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 2 cut(s) 420, 475
BstDSI CCRYGG 1 cut(s) 447
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 3 cut(s) 23, 131, 286
BstMBI GATC 3 cut(s) 20, 128, 283
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 128
BstXI CCANNNNNNTGG 1 cut(s) 454
BstYI RGATCY 1 cut(s) 128
Bsu15I ATCGAT 1 cut(s) 19
BsuRI GGCC 2 cut(s) 363, 458
BsuTUI ATCGAT 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 447
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 1 cut(s) 486
Cac8I GCNNGC 1 cut(s) 271
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 221
ClaI ATCGAT 1 cut(s) 19
CviAII CATG 2 cut(s) 27, 322
DdeI CTNAG 2 cut(s) 420, 475
DpnI GATC 3 cut(s) 22, 130, 285
DpnII GATC 3 cut(s) 20, 128, 283
EaeI YGGCCR 1 cut(s) 456
EciI GGCGGA 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 221
Eco72I CACGTG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 358
FaeI CATG 2 cut(s) 30, 325
FaiI YATR 7 cut(s) 16, 28, 105, 110, 323, 335, 345
FaqI GGGAC 1 cut(s) 234
FatI CATG 2 cut(s) 26, 321
Fnu4HI GCNGC 2 cut(s) 315, 459
Fsp4HI GCNGC 2 cut(s) 315, 459
GlaI GCGC 1 cut(s) 313
GluI GCNGC 2 cut(s) 315, 459
GsaI CCCAGC 1 cut(s) 438
HaeIII GGCC 2 cut(s) 363, 458
HhaI GCGC 1 cut(s) 314
Hin1II CATG 2 cut(s) 30, 325
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 1 cut(s) 184
HphI GGTGA 2 cut(s) 463, 475
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 189, 288
Hpy188III TCNNGA 2 cut(s) 259, 383
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 3 cut(s) 103, 155, 502
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4IV ACGT 2 cut(s) 139, 212
HpyCH4V TGCA 3 cut(s) 216, 281, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 2 cut(s) 420, 475
HpySE526I ACGT 2 cut(s) 139, 212
Hsp92II CATG 2 cut(s) 30, 325
HspAI GCGC 1 cut(s) 312
Kzo9I GATC 3 cut(s) 20, 128, 283
LpnPI CCDG 6 cut(s) 183, 283, 345, 372, 377, 448
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 2 cut(s) 406, 470
MaeII ACGT 2 cut(s) 139, 212
MaeIII GTNAC 1 cut(s) 293
MalI GATC 3 cut(s) 22, 130, 285
MboI GATC 3 cut(s) 20, 128, 283
MboII GAAGA 5 cut(s) 37, 40, 43, 140, 398
MflI RGATCY 1 cut(s) 128
MluCI AATT 4 cut(s) 163, 226, 263, 396
MnlI CCTC 6 cut(s) 71, 91, 94, 129, 132, 366
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 2 cut(s) 376, 452
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 464
NdeII GATC 3 cut(s) 20, 128, 283
NlaIII CATG 2 cut(s) 30, 325
NlaIV GGNNCC 2 cut(s) 130, 222
NmuCI GTSAC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 2 cut(s) 316, 460
PmaCI CACGTG 1 cut(s) 213
PmlI CACGTG 1 cut(s) 213
Ppu21I YACGTR 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 358
PspCI CACGTG 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 2 cut(s) 130, 222
PspPI GGNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 128
RseI CAYNNNNRTG 2 cut(s) 376, 452
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 2 cut(s) 315, 459
Sau3AI GATC 3 cut(s) 20, 128, 283
Sau96I GGNCC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 360
SetI ASST 8 cut(s) 83, 95, 142, 215, 256, 332, 445, 469
SfaNI GCATC 2 cut(s) 406, 470
SinI GGWCC 1 cut(s) 221
SmiMI CAYNNNNRTG 2 cut(s) 376, 452
Sse9I AATT 4 cut(s) 163, 226, 263, 396
SsiI CCGC 2 cut(s) 87, 459
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 451
TaiI ACGT 2 cut(s) 142, 215
TaqI TCGA 1 cut(s) 19
TasI AATT 4 cut(s) 163, 226, 263, 396
TauI GCSGC 1 cut(s) 461
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 493
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 85, 360
TspRI CASTG 1 cut(s) 493
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.