RchiOBHm_Chr4g0400491

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
18093845 .. 18094216
372 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ATGAGACATGATAGCTTGGAAGAAGAAACTAGAACATGTGTTGGTGTTGGTGTCGGTGAAGGTGAAGGTGGTGGCGGTGACGGTGACGGTGAGGACGATGAGGACGACGTTGATGACAATGACGATATGGTTGAGACTAGTCCTGCAAATGAATCAGCCATAGAGGAGTTGGAGGAAATGAGAGATGATAGCTTGGAAGAAGAAACTAGAACATGTGTTATATGTCTTGAAGAGGTTGCTGGCAAAGCTACTCGGTTGCCTTGCTTACAGCTTTTTCATGAAGCTTGTATTGAAGAGTGGTTAAAGATCAAACATATGTGTCCCTTGTGCCGTTACCCAATACCTTGCAATGCAAACCAAGGTAGTTTGTAG

Protein Analysis

123

Amino Acids

13.55

Weight (kDa)

4.05

Isoelectric Point (pI)

56.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 71 - 111 2.3e-11 Ring finger domain
zf-C3HC4 PF00097 72 - 110 2.5e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018729)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AflIII ACRYGT 2 cut(s) 35, 212
AgsI TTSAA 2 cut(s) 230, 293
AhlI ACTAGT 1 cut(s) 137
AluBI AGCT 5 cut(s) 15, 192, 248, 271, 284
AluI AGCT 5 cut(s) 15, 192, 248, 271, 284
Alw26I GTCTC 1 cut(s) 128
AsuHPI GGTGA 5 cut(s) 68, 74, 89, 95, 101
BceAI ACGGC 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 128
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 3 cut(s) 30, 138, 207
BsaJI CCNNGG 1 cut(s) 358
Bse3DI GCAATG 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 358
BseMI GCAATG 1 cut(s) 355
BseRI GAGGAG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 306
Bsp143I GATC 1 cut(s) 306
BspACI CCGC 1 cut(s) 75
BspHI TCATGA 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 358
Bst4CI ACNGT 2 cut(s) 83, 89
Bst6I CTCTTC 2 cut(s) 225, 288
BstC8I GCNNGC 1 cut(s) 241
BstKTI GATC 1 cut(s) 309
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 306
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNSI RCATGY 2 cut(s) 39, 216
Cac8I GCNNGC 1 cut(s) 241
CciI TCATGA 1 cut(s) 277
CviAII CATG 4 cut(s) 8, 36, 213, 278
CviJI RGCY 6 cut(s) 15, 158, 192, 248, 271, 284
CviKI_1 RGCY 6 cut(s) 15, 158, 192, 248, 271, 284
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
Eam1104I CTCTTC 2 cut(s) 225, 288
EarI CTCTTC 2 cut(s) 225, 288
Eco130I CCWWGG 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 4 cut(s) 11, 39, 216, 281
FaqI GGGAC 1 cut(s) 306
FatI CATG 4 cut(s) 7, 35, 212, 277
FauNDI CATATG 1 cut(s) 315
FspBI CTAG 3 cut(s) 30, 138, 207
Hin1II CATG 4 cut(s) 11, 39, 216, 281
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 1 cut(s) 152
HphI GGTGA 5 cut(s) 68, 74, 89, 95, 101
Hpy188III TCNNGA 2 cut(s) 227, 278
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 53, 59
HpyCH4III ACNGT 2 cut(s) 83, 89
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 3 cut(s) 146, 348, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 4 cut(s) 11, 39, 216, 281
Kzo9I GATC 1 cut(s) 306
LpnPI CCDG 2 cut(s) 156, 225
MaeI CTAG 3 cut(s) 30, 138, 207
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 3 cut(s) 77, 83, 332
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 6 cut(s) 32, 35, 209, 212, 242, 305
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 5 cut(s) 85, 94, 157, 166, 226
MseI TTAA 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeI CATATG 1 cut(s) 315
NdeII GATC 1 cut(s) 306
NlaIII CATG 4 cut(s) 11, 39, 216, 281
NmuCI GTSAC 2 cut(s) 77, 83
NspI RCATGY 2 cut(s) 39, 216
PagI TCATGA 1 cut(s) 277
PciI ACATGT 2 cut(s) 35, 212
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 102
PfeI GAWTC 1 cut(s) 152
PscI ACATGT 2 cut(s) 35, 212
SaqAI TTAA 1 cut(s) 302
Sau3AI GATC 1 cut(s) 306
SpeI ACTAGT 1 cut(s) 137
SsiI CCGC 1 cut(s) 75
SspMI CTAG 3 cut(s) 30, 138, 207
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 2 cut(s) 83, 89
TaiI ACGT 1 cut(s) 111
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TseFI GTSAC 2 cut(s) 77, 83
Tsp45I GTSAC 2 cut(s) 77, 83
TspDTI ATGAA 3 cut(s) 165, 266, 294
XceI RCATGY 2 cut(s) 39, 216
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 3 cut(s) 30, 138, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.