RchiOBHm_Chr4g0405951

BAH and coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016454
Physical Location & Seq
Reverse (-)
26892232 .. 26892672
441 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 441 bp
ATGCGAAGTTTTTCACAACCCTTAACTCTGAAGACGGTTAAAGTTGGGTATTGTGTGCAGTTGAAGAAAGAACGTGGTAAAATTTCATATGTTGCACGGATTCATCAAATATATATCAAGCATGGAGATATATCGCAAAACGTGCATCAGAAAGTGCAGTGGTTCTATAAACATCTGGATACTAAAATGAAACATTTATCCTTCATTGCAAAGAATGAGCCCTATATGTCTAACCATTTTGATAATGTCCTAACTCACAGCATTCTTAGCACTTGTACTATCCGCTCTTTTAATAGCAGCACAAAAATTAAGGATGTAGACGCGAATGTTTTCTTCACTAGATTTACATACAACCATATGGTTCAGGAATTTAAACTAGTAGAAGTTGATGTCTTTTATTATTGTCAGATGCCGTATAACTTAAATCAAGTCATGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

146

Amino Acids

17.37

Weight (kDa)

9.52

Isoelectric Point (pI)

29.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 12 - 125 2.2e-11 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 285
AccI GTMKAC 1 cut(s) 318
AccII CGCG 1 cut(s) 323
AciI CCGC 1 cut(s) 283
AcsI RAATTY 2 cut(s) 81, 368
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 1 cut(s) 277
AgsI TTSAA 1 cut(s) 64
AhlI ACTAGT 1 cut(s) 376
ApeKI GCWGC 1 cut(s) 297
ApoI RAATTY 2 cut(s) 81, 368
Asp700I GAANNNNTTC 2 cut(s) 10, 329
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 397
BciVI GTATCC 1 cut(s) 172
BcuI ACTAGT 1 cut(s) 376
BfaI CTAG 2 cut(s) 339, 377
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 299
BmsI GCATC 2 cut(s) 154, 399
BpiI GAAGAC 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 204
BseGI GGATG 1 cut(s) 319
BseMI GCAATG 1 cut(s) 204
BseXI GCAGC 1 cut(s) 309
BsgI GTGCAG 2 cut(s) 77, 176
Bsh1236I CGCG 1 cut(s) 323
BsmI GAATGC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 222
BspACI CCGC 1 cut(s) 283
BspFNI CGCG 1 cut(s) 323
BsrBI CCGCTC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 323
BstMWI GCNNNNNNNGC 2 cut(s) 142, 267
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 309
BstV2I GAAGAC 1 cut(s) 38
BsuI GTATCC 1 cut(s) 172
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 164
CseI GACGC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 276
CviAII CATG 2 cut(s) 122, 433
CviJI RGCY 1 cut(s) 220
CviKI_1 RGCY 1 cut(s) 220
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 266
DraI TTTAAA 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 222
FaeI CATG 2 cut(s) 125, 436
FatI CATG 2 cut(s) 121, 432
FauNDI CATATG 2 cut(s) 88, 357
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 1 cut(s) 298
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 298
FspBI CTAG 2 cut(s) 339, 377
GluI GCNGC 1 cut(s) 298
HgaI GACGC 1 cut(s) 329
Hin1II CATG 2 cut(s) 125, 436
HinfI GANTC 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 3 cut(s) 30, 150, 408
Hpy188III TCNNGA 2 cut(s) 176, 365
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 2 cut(s) 73, 141
HpyCH4V TGCA 5 cut(s) 58, 95, 145, 157, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 267
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 2 cut(s) 73, 141
Hsp92II CATG 2 cut(s) 125, 436
LpnPI CCDG 2 cut(s) 161, 350
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 2 cut(s) 154, 399
MaeI CTAG 2 cut(s) 339, 377
MaeII ACGT 2 cut(s) 73, 141
MbiI CCGCTC 1 cut(s) 285
MboII GAAGA 3 cut(s) 43, 76, 325
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 3 cut(s) 81, 306, 368
MroXI GAANNNNTTC 2 cut(s) 10, 329
MseI TTAA 6 cut(s) 23, 39, 291, 309, 372, 422
Mva1269I GAATGC 1 cut(s) 261
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 142, 267
NdeI CATATG 2 cut(s) 88, 357
NlaIII CATG 2 cut(s) 125, 436
PctI GAATGC 1 cut(s) 261
PdmI GAANNNNTTC 2 cut(s) 10, 329
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 1 cut(s) 299
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 6 cut(s) 23, 39, 291, 309, 372, 422
SatI GCNGC 1 cut(s) 298
SduI GDGCHC 1 cut(s) 222
SetI ASST 2 cut(s) 76, 144
SfaNI GCATC 2 cut(s) 154, 399
SpeI ACTAGT 1 cut(s) 376
Sse9I AATT 3 cut(s) 81, 306, 368
SsiI CCGC 1 cut(s) 283
SspMI CTAG 2 cut(s) 339, 377
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 2 cut(s) 76, 144
TasI AATT 3 cut(s) 81, 306, 368
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 6 cut(s) 23, 39, 291, 309, 372, 422
Tru9I TTAA 6 cut(s) 23, 39, 291, 309, 372, 422
TscAI CASTG 1 cut(s) 164
TseI GCWGC 1 cut(s) 297
TspDTI ATGAA 4 cut(s) 75, 92, 193, 203
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 1 cut(s) 164
XapI RAATTY 2 cut(s) 81, 368
XmiI GTMKAC 1 cut(s) 318
XmnI GAANNNNTTC 2 cut(s) 10, 329
XspI CTAG 2 cut(s) 339, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.