Rroxscaffold_1G00045810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016454
Physical Location & Seq
Forward (+)
64931246 .. 64937451
6206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045810.1

Sequence Viewer

Length: 687 bp
ATGGGAGAGGATAGCTGCGGTGATAACCAAGTAGCTGGTGCTCTAATGCAGGAATCTGCTGTAAATGTTGGCCCTTGTGTAGATAATTGTAATATGCAGGACATTGGCATTAGTGATTTGGCGAAAGAATCTACTGCGGACGATAGTCTTTGTGAGGATGACCATAATGAGCGGGGGTTGGAGGGACATTGTTTGAGCCCCACCTCCCCGAGACAGACCGGGGACAATGACGTCACTGCGACAATCTTGGTCGGTAGAGGTACTCCACTTTGTGCTTCCTCTTCTCGCTCTCTTGCTCCTAACTCGGATAAATCGGGAAGTGTGTCGAGGGCTGATTTGGAGATGCGGTTTAGAAAGTTTCTTGCTTGTTTTGACACCGAGGATCGCTTAAGTATTACTATTGATGACATTGCGCGCCCATTGAGTGGTATCGGATCTTCATTTGAGGGTGGGAAAGCGGCACAACTTTGGAACACCGCGGTGGAGCTTGAGCGCAAGCATTGGCTTCCCTTCCTTGACTTACCGCGAGAAAGATCTCCATCACTTATATCTCTAATATCCGGCCATGATGGCGAGGCATGCTTGAAATTTCGAAGGAACAGATCCCCCATCGGTCGTGAACTCGTCATAGTACTCGGCTTTGATAAAGTGAGCTTCACTCCGGTGGAATGGCAACCGATTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.72

Weight (kDa)

4.76

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AatII GACGTC 1 cut(s) 234
AccB7I CCANNNNNTGG 1 cut(s) 425
AccBSI CCGCTC 1 cut(s) 172
AccII CGCG 3 cut(s) 415, 479, 526
AciI CCGC 8 cut(s) 18, 137, 172, 346, 458, 477, 479, 524
AclWI GGATC 3 cut(s) 390, 442, 597
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 1 cut(s) 587
AcyI GRCGYC 1 cut(s) 231
AdeI CACNNNGTG 1 cut(s) 272
AfaI GTAC 2 cut(s) 262, 633
AfiI CCNNNNNNNGG 1 cut(s) 425
AflII CTTAAG 1 cut(s) 388
AgsI TTSAA 1 cut(s) 586
AleI CACNNNNGTG 2 cut(s) 479, 662
AluBI AGCT 4 cut(s) 15, 35, 487, 654
AluI AGCT 4 cut(s) 15, 35, 487, 654
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 3 cut(s) 390, 442, 597
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 2 cut(s) 70, 562
ApeKI GCWGC 1 cut(s) 15
ApoI RAATTY 1 cut(s) 587
AspLEI GCGC 3 cut(s) 415, 417, 495
AspS9I GGNCC 1 cut(s) 71
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 32
AsuII TTCGAA 1 cut(s) 592
AvaI CYCGRG 1 cut(s) 208
BanII GRGCYC 1 cut(s) 200
BarI GAAGNNNNNNTAC 2 cut(s) 421, 453
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 2
BccI CCATC 3 cut(s) 547, 563, 617
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 1 cut(s) 685
BfrI CTTAAG 1 cut(s) 388
BglI GCCNNNNNGGC 1 cut(s) 570
BglII AGATCT 1 cut(s) 533
BisI GCNGC 2 cut(s) 16, 459
BlsI GCNGC 2 cut(s) 17, 460
BmcAI AGTACT 1 cut(s) 633
Bme1390I CCNGG 1 cut(s) 220
BmeT110I CYCGRG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 220
BmsI GCATC 1 cut(s) 333
BoxI GACNNNNGTC 1 cut(s) 144
BplI GAGNNNNNCTC 2 cut(s) 643, 675
Bpu14I TTCGAA 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 509
BpuMI CCSGG 1 cut(s) 220
BsaBI GATNNNNATC 1 cut(s) 538
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 219, 378, 477
BsaWI WCCGGW 1 cut(s) 661
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse3DI GCAATG 1 cut(s) 408
Bse8I GATNNNNATC 1 cut(s) 538
BseDI CCNNGG 3 cut(s) 219, 378, 477
BseGI GGATG 1 cut(s) 163
BseJI GATNNNNATC 1 cut(s) 538
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMI GCAATG 1 cut(s) 408
BsePI GCGCGC 1 cut(s) 413
BseXI GCAGC 1 cut(s) 2
Bsh1236I CGCG 3 cut(s) 415, 479, 526
Bsh1285I CGRYCG 1 cut(s) 616
BshFI GGCC 2 cut(s) 72, 564
BsiEI CGRYCG 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 3 cut(s) 219, 561, 662
BslFI GGGAC 2 cut(s) 198, 236
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 1 cut(s) 205
BsmFI GGGAC 2 cut(s) 198, 236
BsnI GGCC 2 cut(s) 72, 564
BsoBI CYCGRG 1 cut(s) 208
Bsp119I TTCGAA 1 cut(s) 592
Bsp1286I GDGCHC 2 cut(s) 43, 200
Bsp143I GATC 4 cut(s) 382, 434, 533, 602
BspACI CCGC 8 cut(s) 18, 137, 172, 346, 458, 477, 479, 524
BspANI GGCC 2 cut(s) 72, 564
BspFNI CGCG 3 cut(s) 415, 479, 526
BspPI GGATC 3 cut(s) 390, 442, 597
BspT104I TTCGAA 1 cut(s) 592
BspTI CTTAAG 1 cut(s) 388
BsrBI CCGCTC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 408
BssECI CCNNGG 3 cut(s) 219, 378, 477
BssHII GCGCGC 1 cut(s) 413
BssMI GATC 4 cut(s) 382, 434, 533, 602
BssNI GRCGYC 1 cut(s) 231
Bst6I CTCTTC 1 cut(s) 286
BstACI GRCGYC 1 cut(s) 231
BstAFI CTTAAG 1 cut(s) 388
BstBI TTCGAA 1 cut(s) 592
BstC8I GCNNGC 3 cut(s) 415, 497, 580
BstDSI CCRYGG 1 cut(s) 477
BstF5I GGATG 1 cut(s) 163
BstFNI CGCG 3 cut(s) 415, 479, 526
BstHHI GCGC 3 cut(s) 415, 417, 495
BstKTI GATC 4 cut(s) 385, 437, 536, 605
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 4 cut(s) 382, 434, 533, 602
BstMCI CGRYCG 1 cut(s) 616
BstMWI GCNNNNNNNGC 2 cut(s) 570, 579
BstNSI RCATGY 1 cut(s) 582
BstPAI GACNNNNGTC 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 218
BstUI CGCG 3 cut(s) 415, 479, 526
BstV1I GCAGC 1 cut(s) 2
BstX2I RGATCY 3 cut(s) 434, 533, 602
BstXI CCANNNNNNTGG 1 cut(s) 35
BstYI RGATCY 3 cut(s) 434, 533, 602
BsuRI GGCC 2 cut(s) 72, 564
BtgI CCRYGG 1 cut(s) 477
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 3 cut(s) 415, 497, 580
CfoI GCGC 3 cut(s) 415, 417, 495
Cfr13I GGNCC 1 cut(s) 71
Cfr42I CCGCGG 1 cut(s) 480
Csp6I GTAC 2 cut(s) 261, 632
CviAII CATG 2 cut(s) 566, 579
CviQI GTAC 2 cut(s) 261, 632
DpnI GATC 4 cut(s) 384, 436, 535, 604
DpnII GATC 4 cut(s) 382, 434, 533, 602
DraIII CACNNNGTG 1 cut(s) 272
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 2 cut(s) 569, 582
FaiI YATR 6 cut(s) 95, 165, 548, 567, 580, 629
FaqI GGGAC 2 cut(s) 198, 236
FatI CATG 2 cut(s) 565, 578
FauI CCCGC 1 cut(s) 165
Fnu4HI GCNGC 2 cut(s) 16, 459
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 16, 459
FspBI CTAG 1 cut(s) 685
GlaI GCGC 3 cut(s) 414, 416, 494
GluI GCNGC 2 cut(s) 16, 459
HaeIII GGCC 2 cut(s) 72, 564
HapII CCGG 3 cut(s) 219, 561, 662
HhaI GCGC 3 cut(s) 415, 417, 495
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 2 cut(s) 569, 582
Hin6I GCGC 3 cut(s) 413, 415, 493
HinP1I GCGC 3 cut(s) 413, 415, 493
HinfI GANTC 3 cut(s) 53, 128, 679
HpaII CCGG 3 cut(s) 219, 561, 662
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 620
Hpy188I TCNGA 2 cut(s) 307, 434
Hpy188III TCNNGA 2 cut(s) 315, 617
Hpy8I GTNNAC 1 cut(s) 620
HpyAV CCTTC 2 cut(s) 520, 588
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 49, 97
HpyF10VI GCNNNNNNNGC 2 cut(s) 570, 579
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 2 cut(s) 569, 582
HspAI GCGC 3 cut(s) 413, 415, 493
KspI CCGCGG 1 cut(s) 480
Kzo9I GATC 4 cut(s) 382, 434, 533, 602
LmnI GCTCC 2 cut(s) 301, 484
LpnPI CCDG 6 cut(s) 21, 35, 83, 232, 574, 675
Lsp1109I GCAGC 1 cut(s) 2
LweI GCATC 1 cut(s) 333
MaeI CTAG 1 cut(s) 685
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 232
MalI GATC 4 cut(s) 384, 436, 535, 604
MbiI CCGCTC 1 cut(s) 172
MboI GATC 4 cut(s) 382, 434, 533, 602
MboII GAAGA 2 cut(s) 273, 429
MflI RGATCY 3 cut(s) 434, 533, 602
MhlI GDGCHC 2 cut(s) 43, 200
MluCI AATT 2 cut(s) 85, 587
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 9 cut(s) 148, 175, 214, 251, 289, 321, 373, 439, 568
MseI TTAA 1 cut(s) 389
MslI CAYNNNNRTG 2 cut(s) 479, 662
MspA1I CMGCKG 1 cut(s) 479
MspCI CTTAAG 1 cut(s) 388
MspI CCGG 3 cut(s) 219, 561, 662
MspR9I CCNGG 1 cut(s) 220
MvnI CGCG 3 cut(s) 415, 479, 526
MwoI GCNNNNNNNGC 2 cut(s) 570, 579
NciI CCSGG 1 cut(s) 220
NdeII GATC 4 cut(s) 382, 434, 533, 602
NlaIII CATG 2 cut(s) 569, 582
NmeAIII GCCGAG 1 cut(s) 615
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 582
NspV TTCGAA 1 cut(s) 592
OliI CACNNNNGTG 2 cut(s) 479, 662
PaeI GCATGC 1 cut(s) 582
PauI GCGCGC 1 cut(s) 413
PfeI GAWTC 3 cut(s) 53, 128, 679
PflMI CCANNNNNTGG 1 cut(s) 425
PkrI GCNGC 2 cut(s) 17, 460
PshAI GACNNNNGTC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 3 cut(s) 434, 533, 602
PteI GCGCGC 1 cut(s) 413
RsaI GTAC 2 cut(s) 262, 633
RsaNI GTAC 2 cut(s) 261, 632
RseI CAYNNNNRTG 2 cut(s) 479, 662
SacII CCGCGG 1 cut(s) 480
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 2 cut(s) 16, 459
Sau3AI GATC 4 cut(s) 382, 434, 533, 602
Sau96I GGNCC 1 cut(s) 71
ScaI AGTACT 1 cut(s) 633
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 2 cut(s) 43, 200
SetI ASST 7 cut(s) 17, 37, 206, 234, 262, 489, 656
SfaNI GCATC 1 cut(s) 333
Sfr303I CCGCGG 1 cut(s) 480
SfuI TTCGAA 1 cut(s) 592
SgrBI CCGCGG 1 cut(s) 480
SmiMI CAYNNNNRTG 2 cut(s) 479, 662
SmlI CTYRAG 2 cut(s) 388, 488
SmoI CTYRAG 2 cut(s) 388, 488
SphI GCATGC 1 cut(s) 582
Sse9I AATT 2 cut(s) 85, 587
SsiI CCGC 8 cut(s) 18, 137, 172, 346, 458, 477, 479, 524
SspMI CTAG 1 cut(s) 685
StyD4I CCNGG 1 cut(s) 218
TaiI ACGT 1 cut(s) 234
TaqI TCGA 2 cut(s) 326, 592
TaqII GACCGA 1 cut(s) 602
TasI AATT 2 cut(s) 85, 587
TatI WGTACW 1 cut(s) 631
TauI GCSGC 1 cut(s) 461
TfiI GAWTC 3 cut(s) 53, 128, 679
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 429
TspRI CASTG 1 cut(s) 241
Van91I CCANNNNNTGG 1 cut(s) 425
Vha464I CTTAAG 1 cut(s) 388
XapI RAATTY 1 cut(s) 587
XceI RCATGY 1 cut(s) 582
XspI CTAG 1 cut(s) 685
ZraI GACGTC 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.