Rmu_sc0001136.1_g000007

Bromo adjacent homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001136.1
OG0016454
Physical Location & Seq
Reverse (-)
36550 .. 36951
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001136.1_g000007.1.cds

Sequence Viewer

Length: 402 bp
atgagtttctcaaatggttgttcagttggggattatgtgctgttgaaggctgaacgtggtaaaatttcatatattgctcgggttcatcaaatatatatcaggtgtggagatgtatctcaagaagtgcatctgaaagtgcagtggttctataggcctgaggatactcaaatgaagcgtgtatccttcaacggaaagaatgagctctataagtctaatcattatgattatgatgtcccagctgacagtattcttaacacttgtagtgtccgctcttttaaaagctacatggaattaccagatgcaaatgagaatgttttcttcactagatatacatgcgacaatgtgtctaagaaggttgaagatgcagatgttgatgtgtatgtgactttgcttttgttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

133

Amino Acids

15.48

Weight (kDa)

5.88

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 270
AciI CCGC 1 cut(s) 268
AcsI RAATTY 1 cut(s) 63
AgsI TTSAA 3 cut(s) 46, 187, 359
AhdI GACNNNNNGTC 1 cut(s) 343
AluBI AGCT 3 cut(s) 202, 239, 282
AluI AGCT 3 cut(s) 202, 239, 282
Alw21I GWGCWC 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 78
AoxI GGCC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 63
ArsI GACNNNNNNTTYG 1 cut(s) 376
Asp700I GAANNNNTTC 1 cut(s) 314
AvaI CYCGRG 1 cut(s) 78
AxyI CCTNAGG 1 cut(s) 156
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 204
BciVI GTATCC 2 cut(s) 154, 190
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 148
BfuI GTATCC 2 cut(s) 154, 190
BmeRI GACNNNNNGTC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 78
BmsI GCATC 3 cut(s) 136, 289, 352
BpuEI CTTGAG 1 cut(s) 102
Bse21I CCTNAGG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 147
BseYI CCCAGC 1 cut(s) 235
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 204
BspACI CCGC 1 cut(s) 268
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 148
BsrBI CCGCTC 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 156, 348
BstNSI RCATGY 1 cut(s) 336
BstSFI CTRYAG 1 cut(s) 148
Bsu36I CCTNAGG 1 cut(s) 156
BsuI GTATCC 2 cut(s) 154, 190
BsuRI GGCC 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 146
CviAII CATG 2 cut(s) 286, 333
CviJI RGCY 5 cut(s) 50, 154, 202, 239, 282
CviKI_1 RGCY 5 cut(s) 50, 154, 202, 239, 282
DdeI CTNAG 2 cut(s) 156, 348
DraI TTTAAA 1 cut(s) 277
DriI GACNNNNNGTC 1 cut(s) 343
Eam1105I GACNNNNNGTC 1 cut(s) 343
Ecl136II GAGCTC 1 cut(s) 202
Eco147I AGGCCT 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
Eco81I CCTNAGG 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 78
EcoICRI GAGCTC 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 204
FaeI CATG 2 cut(s) 289, 336
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 285, 332
FriOI GRGCYC 1 cut(s) 204
FspBI CTAG 1 cut(s) 324
GsaI CCCAGC 1 cut(s) 239
HaeIII GGCC 1 cut(s) 154
Hin1II CATG 2 cut(s) 289, 336
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 119
HpyAV CCTTC 3 cut(s) 40, 193, 346
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 4 cut(s) 127, 139, 302, 365
HpyF3I CTNAG 2 cut(s) 156, 348
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 2 cut(s) 289, 336
LpnPI CCDG 4 cut(s) 85, 168, 249, 309
LweI GCATC 3 cut(s) 136, 289, 352
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 382
MbiI CCGCTC 1 cut(s) 270
MboII GAAGA 2 cut(s) 310, 371
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 2 cut(s) 63, 290
MnlI CCTC 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 314
MseI TTAA 3 cut(s) 252, 276, 400
MspA1I CMGCKG 1 cut(s) 239
NlaIII CATG 2 cut(s) 289, 336
NmuCI GTSAC 1 cut(s) 382
NspI RCATGY 1 cut(s) 336
PceI AGGCCT 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 314
Psp124BI GAGCTC 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 239
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 3 cut(s) 252, 276, 400
SduI GDGCHC 1 cut(s) 204
SetI ASST 6 cut(s) 58, 104, 204, 241, 284, 357
SfaNI GCATC 3 cut(s) 136, 289, 352
SfcI CTRYAG 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 2 cut(s) 63, 290
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 1 cut(s) 268
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 1 cut(s) 204
StuI AGGCCT 1 cut(s) 154
TaaI ACNGT 1 cut(s) 245
TaiI ACGT 1 cut(s) 58
TasI AATT 2 cut(s) 63, 290
Tru1I TTAA 3 cut(s) 252, 276, 400
Tru9I TTAA 3 cut(s) 252, 276, 400
TscAI CASTG 1 cut(s) 146
TseFI GTSAC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 3 cut(s) 57, 74, 185
TspGWI ACGGA 1 cut(s) 204
TspRI CASTG 1 cut(s) 146
XapI RAATTY 1 cut(s) 63
XceI RCATGY 1 cut(s) 336
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.