Rh7DG329200

Bromo adjacent homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016454
Physical Location & Seq
Reverse (-)
39961252 .. 39971141
9890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG329200.1

Sequence Viewer

Length: 978 bp
ATGAACTTTTGTAAACGTAAACCGTCGTCCAAGGGTGATGTTTATGTTGATCTTAGTGATGGGCCAAGTGTCGACGGGGATGGTAGCCCCCTGAGTGATGAGGAGAATGAGTCTGATACTTATGAGGGAAAGGCCTGCGATGGTGGTAGCCAGGTGGAGTCTTTTGAAGATGAGGATGGTCAGGTAGCTGGTGCTCTAATGCAGGAATCTGCTGTAAATGTTGGCCCTTGTGTAGATAATTGTAATATGCAGGACATTGGTATTAGTGACTTGGCGAAAGAATCTACTGCGGACGATAGTCTTTGTGAGGATGACCATAATGAGCGGGGCGGATCAGATTTGTTAGGGGTTGGAGGGACATTGTTTGAGCCCCACCTCCCTGAGACAGCACCGGGGGACAACGACGTCACTGCGACAATCTTGGTCTGTAGAGGAACTCCACTTTGTGCTTCCTCTTCTCGCTCTCTTGCTCCTAACTCAGATAAATCGGGAAGTGTGTCGAGGGTTGATTTGGAGATGCGGTTTAGAAAGTTTCTTGCTTGTTTTGATACTGAGGATAGCTTAAGCATTACCATTGATGACATTGCGCTCCCATTGAGTGTTGGGGATTATGTGCTGTTGAAGGCTGAACGTGGTAAAATTTCATATATTGCTCGGATTCATCAAATATATATCAGGTGTGGAGATGTATCTCAAGAAGTGCATCTGAAAGTGCAGTGGTTCTATAGGCCTGAGGATACTCAAATGAAGCGTGTATCCTTCAACGGAAAGAATGAGCTCTATAAGTCTAATCATTATGATTATGATGTCCCAGCTGACAGTATTCTTAACACTTGTAGTGTCCGCTCTTTTAAAAGCTACATGGAATTACCGGATGCAGATGAGAATGTTTTCTTCACTAGATATACATGCGACAATGTGTCTAAGAAGGTTGAAGATGCAGATGTTGATGTGTACGTGACTTTGCTTTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

325

Amino Acids

35.75

Weight (kDa)

4.35

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 199 - 312 5.7e-19 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 404
AatII GACGTC 1 cut(s) 408
AccBSI CCGCTC 2 cut(s) 325, 846
AccI GTMKAC 1 cut(s) 72
AciI CCGC 5 cut(s) 290, 325, 330, 520, 844
AclWI GGATC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 639
AcyI GRCGYC 1 cut(s) 405
AdeI CACNNNGTG 1 cut(s) 446
AfaI GTAC 1 cut(s) 956
AflII CTTAAG 1 cut(s) 562
AgsI TTSAA 4 cut(s) 167, 622, 763, 935
AhdI GACNNNNNGTC 1 cut(s) 919
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 5 cut(s) 188, 561, 778, 815, 858
AluI AGCT 5 cut(s) 188, 561, 778, 815, 858
Alw21I GWGCWC 2 cut(s) 196, 780
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 1 cut(s) 340
AoxI GGCC 4 cut(s) 62, 132, 223, 728
ApoI RAATTY 1 cut(s) 639
ArsI GACNNNNNNTTYG 1 cut(s) 952
Asp700I GAANNNNTTC 1 cut(s) 890
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 2 cut(s) 62, 224
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 732
BanII GRGCYC 2 cut(s) 372, 780
Bbv12I GWGCWC 2 cut(s) 196, 780
BccI CCATC 4 cut(s) 53, 74, 134, 170
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 1 cut(s) 152
BciVI GTATCC 2 cut(s) 730, 766
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 1 cut(s) 900
BfmI CTRYAG 2 cut(s) 427, 724
BfrI CTTAAG 1 cut(s) 562
BfuI GTATCC 2 cut(s) 730, 766
Bme1390I CCNGG 2 cut(s) 152, 393
BmeRI GACNNNNNGTC 1 cut(s) 919
BmgT120I GGNCC 2 cut(s) 62, 224
BmrFI CCNGG 2 cut(s) 152, 393
BmsI GCATC 4 cut(s) 507, 712, 865, 928
BoxI GACNNNNGTC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 678
BpuMI CCSGG 1 cut(s) 393
BsaAI YACGTR 1 cut(s) 958
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 30, 392
BsaWI WCCGGW 1 cut(s) 871
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 506, 536
Bse21I CCTNAGG 1 cut(s) 732
Bse3DI GCAATG 1 cut(s) 582
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 30, 392
BseGI GGATG 4 cut(s) 85, 181, 316, 880
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 5 cut(s) 83, 372, 492, 543, 723
BseRI GAGGAG 1 cut(s) 116
BseYI CCCAGC 1 cut(s) 811
BsgI GTGCAG 1 cut(s) 734
BshFI GGCC 4 cut(s) 64, 134, 225, 730
BsiHKAI GWGCWC 2 cut(s) 196, 780
BsiSI CCGG 2 cut(s) 392, 872
BslFI GGGAC 3 cut(s) 370, 410, 794
BsmAI GTCTC 1 cut(s) 377
BsmFI GGGAC 3 cut(s) 370, 410, 794
BsnI GGCC 4 cut(s) 64, 134, 225, 730
Bsp1286I GDGCHC 3 cut(s) 196, 372, 780
Bsp143I GATC 2 cut(s) 49, 332
BspACI CCGC 5 cut(s) 290, 325, 330, 520, 844
BspANI GGCC 4 cut(s) 64, 134, 225, 730
BspCNI CTCAG 5 cut(s) 84, 373, 491, 544, 724
BspPI GGATC 1 cut(s) 340
BspTI CTTAAG 1 cut(s) 562
BsrBI CCGCTC 2 cut(s) 325, 846
BsrDI GCAATG 1 cut(s) 582
BssECI CCNNGG 2 cut(s) 30, 392
BssMI GATC 2 cut(s) 49, 332
BssNI GRCGYC 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 24, 821
Bst6I CTCTTC 1 cut(s) 460
BstACI GRCGYC 1 cut(s) 405
BstAFI CTTAAG 1 cut(s) 562
BstBAI YACGTR 1 cut(s) 958
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 7 cut(s) 53, 92, 381, 478, 552, 732, 924
BstF5I GGATG 4 cut(s) 85, 181, 316, 880
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 2 cut(s) 52, 335
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 2 cut(s) 49, 332
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 912
BstPAI GACNNNNGTC 1 cut(s) 297
BstSCI CCNGG 2 cut(s) 150, 391
BstSFI CTRYAG 2 cut(s) 427, 724
Bsu36I CCTNAGG 1 cut(s) 732
BsuI GTATCC 2 cut(s) 730, 766
BsuRI GGCC 4 cut(s) 64, 134, 225, 730
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 4 cut(s) 85, 181, 316, 880
BtsI GCAGTG 2 cut(s) 408, 722
BtsIMutI CAGTG 2 cut(s) 408, 722
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 1 cut(s) 589
Cfr13I GGNCC 2 cut(s) 62, 224
Csp6I GTAC 1 cut(s) 955
CviAII CATG 2 cut(s) 862, 909
CviQI GTAC 1 cut(s) 955
DdeI CTNAG 7 cut(s) 53, 92, 381, 478, 552, 732, 924
DpnI GATC 2 cut(s) 51, 334
DpnII GATC 2 cut(s) 49, 332
DraI TTTAAA 1 cut(s) 853
DraIII CACNNNGTG 1 cut(s) 446
DrdI GACNNNNNNGTC 1 cut(s) 404
DriI GACNNNNNGTC 1 cut(s) 919
DseDI GACNNNNNNGTC 1 cut(s) 404
Eam1104I CTCTTC 1 cut(s) 460
Eam1105I GACNNNNNGTC 1 cut(s) 919
EarI CTCTTC 1 cut(s) 460
EciI GGCGGA 1 cut(s) 345
Ecl136II GAGCTC 1 cut(s) 778
Eco130I CCWWGG 1 cut(s) 30
Eco147I AGGCCT 2 cut(s) 134, 730
Eco24I GRGCYC 2 cut(s) 372, 780
Eco53kI GAGCTC 1 cut(s) 778
Eco81I CCTNAGG 1 cut(s) 732
EcoICRI GAGCTC 1 cut(s) 778
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 2 cut(s) 372, 780
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 2 cut(s) 865, 912
FaqI GGGAC 3 cut(s) 370, 410, 794
FatI CATG 2 cut(s) 861, 908
FauI CCCGC 1 cut(s) 318
FblI GTMKAC 1 cut(s) 72
FokI GGATG 4 cut(s) 92, 188, 323, 887
FriOI GRGCYC 2 cut(s) 372, 780
FspBI CTAG 1 cut(s) 900
GlaI GCGC 1 cut(s) 588
GsaI CCCAGC 1 cut(s) 815
HaeIII GGCC 4 cut(s) 64, 134, 225, 730
HapII CCGG 2 cut(s) 392, 872
HhaI GCGC 1 cut(s) 589
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 2 cut(s) 865, 912
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 5 cut(s) 110, 158, 206, 281, 658
HpaII CCGG 2 cut(s) 392, 872
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 4 cut(s) 14, 20, 73, 955
Hpy188I TCNGA 5 cut(s) 115, 337, 481, 657, 708
Hpy188III TCNNGA 2 cut(s) 489, 695
Hpy8I GTNNAC 4 cut(s) 14, 20, 73, 955
Hpy99I CGWCG 3 cut(s) 28, 77, 407
HpyAV CCTTC 3 cut(s) 616, 769, 922
HpyCH4III ACNGT 2 cut(s) 24, 821
HpyCH4IV ACGT 4 cut(s) 16, 405, 631, 957
HpyCH4V TGCA 6 cut(s) 202, 250, 703, 715, 878, 941
HpyF3I CTNAG 7 cut(s) 53, 92, 381, 478, 552, 732, 924
HpySE526I ACGT 4 cut(s) 16, 405, 631, 957
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 2 cut(s) 865, 912
HspAI GCGC 1 cut(s) 587
Kzo9I GATC 2 cut(s) 49, 332
LmnI GCTCC 2 cut(s) 475, 594
LweI GCATC 4 cut(s) 507, 712, 865, 928
MaeI CTAG 1 cut(s) 900
MaeII ACGT 4 cut(s) 16, 405, 631, 957
MaeIII GTNAC 3 cut(s) 266, 406, 958
MalI GATC 2 cut(s) 51, 334
MbiI CCGCTC 2 cut(s) 325, 846
MboI GATC 2 cut(s) 49, 332
MboII GAAGA 4 cut(s) 179, 447, 886, 947
MhlI GDGCHC 3 cut(s) 196, 372, 780
MluCI AATT 3 cut(s) 238, 639, 866
MlyI GAGTC 2 cut(s) 119, 167
MmeI TCCRAC 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 890
MseI TTAA 4 cut(s) 563, 828, 852, 976
MspA1I CMGCKG 1 cut(s) 815
MspCI CTTAAG 1 cut(s) 562
MspI CCGG 2 cut(s) 392, 872
MspR9I CCNGG 2 cut(s) 152, 393
MvaI CCWGG 1 cut(s) 152
NciI CCSGG 1 cut(s) 393
NdeII GATC 2 cut(s) 49, 332
NlaIII CATG 2 cut(s) 865, 912
NmuCI GTSAC 3 cut(s) 266, 406, 958
NspI RCATGY 1 cut(s) 912
PceI AGGCCT 2 cut(s) 134, 730
PdmI GAANNNNTTC 1 cut(s) 890
PfeI GAWTC 3 cut(s) 206, 281, 658
PleI GAGTC 2 cut(s) 118, 166
PpsI GAGTC 2 cut(s) 118, 166
Ppu21I YACGTR 1 cut(s) 958
PshAI GACNNNNGTC 1 cut(s) 297
Psp124BI GAGCTC 1 cut(s) 780
Psp6I CCWGG 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 811
PspGI CCWGG 1 cut(s) 150
PspPI GGNCC 2 cut(s) 62, 224
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 1 cut(s) 956
RsaNI GTAC 1 cut(s) 955
SacI GAGCTC 1 cut(s) 780
SalI GTCGAC 1 cut(s) 71
SaqAI TTAA 4 cut(s) 563, 828, 852, 976
Sau3AI GATC 2 cut(s) 49, 332
Sau96I GGNCC 2 cut(s) 62, 224
SchI GAGTC 2 cut(s) 119, 167
ScrFI CCNGG 2 cut(s) 152, 393
SduI GDGCHC 3 cut(s) 196, 372, 780
SfaNI GCATC 4 cut(s) 507, 712, 865, 928
SfcI CTRYAG 2 cut(s) 427, 724
SmlI CTYRAG 2 cut(s) 562, 693
SmoI CTYRAG 2 cut(s) 562, 693
Sse9I AATT 3 cut(s) 238, 639, 866
SseBI AGGCCT 2 cut(s) 134, 730
SsiI CCGC 5 cut(s) 290, 325, 330, 520, 844
SspMI CTAG 1 cut(s) 900
SstI GAGCTC 1 cut(s) 780
StuI AGGCCT 2 cut(s) 134, 730
StyD4I CCNGG 2 cut(s) 150, 391
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 24, 821
TaiI ACGT 4 cut(s) 19, 408, 634, 960
TaqI TCGA 2 cut(s) 72, 500
TasI AATT 3 cut(s) 238, 639, 866
TfiI GAWTC 3 cut(s) 206, 281, 658
Tru1I TTAA 4 cut(s) 563, 828, 852, 976
Tru9I TTAA 4 cut(s) 563, 828, 852, 976
TscAI CASTG 2 cut(s) 415, 722
TseFI GTSAC 3 cut(s) 266, 406, 958
Tsp45I GTSAC 3 cut(s) 266, 406, 958
TspDTI ATGAA 4 cut(s) 17, 633, 650, 761
TspGWI ACGGA 1 cut(s) 780
TspRI CASTG 2 cut(s) 415, 722
Vha464I CTTAAG 1 cut(s) 562
XapI RAATTY 1 cut(s) 639
XceI RCATGY 1 cut(s) 912
XmiI GTMKAC 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 890
XspI CTAG 1 cut(s) 900
ZraI GACGTC 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.