Rmu_sc0002424.1_g000001

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002424.1
OG0016454
Physical Location & Seq
Forward (+)
1665 .. 2066
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002424.1_g000001.1.cds

Sequence Viewer

Length: 402 bp
atgggtttctcaaatggttgttcagttggggattatgtgctgttgaaggctgaacgtggtaaaattccatatattgctcggattcatcaaatatatatcaagtgtggagatgtatctggagaaatgcatttgaaagtgcagtggttctataggcctgaggatactcaaatgaagtgtgtatccttcaatggaaagaatgagctctgtcagtctaatcattatgattatgatgtcccagctgacagcattcttaacacttgtagtgtccactcttttaaaagctacacagaattaccggatgcagatgagaatgttttcttcactagatatacatacgacaatgtggctaagaaggttgaagatgtagatgttgatgtgtacgtggctttgcttttgttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

133

Amino Acids

15.29

Weight (kDa)

5.07

Isoelectric Point (pI)

22.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 63
AfaI GTAC 1 cut(s) 380
AgsI TTSAA 4 cut(s) 46, 133, 187, 359
AluBI AGCT 3 cut(s) 202, 239, 282
AluI AGCT 3 cut(s) 202, 239, 282
Alw21I GWGCWC 1 cut(s) 204
AoxI GGCC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 314
AxyI CCTNAGG 1 cut(s) 156
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 204
BciVI GTATCC 2 cut(s) 154, 190
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 148
BfuI GTATCC 2 cut(s) 154, 190
BmsI GCATC 1 cut(s) 289
BpmI CTGGAG 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 382
BsaWI WCCGGW 1 cut(s) 295
Bse21I CCTNAGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 147
BseYI CCCAGC 1 cut(s) 235
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 204
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 148
BstBAI YACGTR 1 cut(s) 382
BstDEI CTNAG 2 cut(s) 156, 348
BstF5I GGATG 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 148
Bsu36I CCTNAGG 1 cut(s) 156
BsuI GTATCC 2 cut(s) 154, 190
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 146
Csp6I GTAC 1 cut(s) 379
CviJI RGCY 7 cut(s) 50, 154, 202, 239, 282, 347, 386
CviKI_1 RGCY 7 cut(s) 50, 154, 202, 239, 282, 347, 386
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 2 cut(s) 156, 348
DraI TTTAAA 1 cut(s) 277
Ecl136II GAGCTC 1 cut(s) 202
Eco147I AGGCCT 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
Eco81I CCTNAGG 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 202
EcoT22I ATGCAT 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 204
FaqI GGGAC 1 cut(s) 218
FokI GGATG 1 cut(s) 311
FriOI GRGCYC 1 cut(s) 204
FspBI CTAG 1 cut(s) 324
GsaI CCCAGC 1 cut(s) 239
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 1 cut(s) 154
HapII CCGG 1 cut(s) 296
HinfI GANTC 1 cut(s) 82
HpaII CCGG 1 cut(s) 296
Hpy166II GTNNAC 2 cut(s) 268, 379
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 117
Hpy8I GTNNAC 2 cut(s) 268, 379
HpyAV CCTTC 3 cut(s) 40, 193, 346
HpyCH4IV ACGT 2 cut(s) 55, 381
HpyCH4V TGCA 3 cut(s) 127, 139, 302
HpyF3I CTNAG 2 cut(s) 156, 348
HpySE526I ACGT 2 cut(s) 55, 381
LpnPI CCDG 4 cut(s) 102, 168, 249, 309
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 324
MaeII ACGT 2 cut(s) 55, 381
MboII GAAGA 2 cut(s) 310, 371
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 2 cut(s) 63, 290
MnlI CCTC 1 cut(s) 151
Mph1103I ATGCAT 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 314
MseI TTAA 3 cut(s) 252, 276, 400
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 246
NsiI ATGCAT 1 cut(s) 129
PceI AGGCCT 1 cut(s) 154
PctI GAATGC 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 382
Psp124BI GAGCTC 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 3 cut(s) 252, 276, 400
SduI GDGCHC 1 cut(s) 204
SetI ASST 6 cut(s) 58, 204, 241, 284, 357, 384
SfaNI GCATC 1 cut(s) 289
SfcI CTRYAG 1 cut(s) 148
Sse9I AATT 2 cut(s) 63, 290
SseBI AGGCCT 1 cut(s) 154
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 1 cut(s) 204
StuI AGGCCT 1 cut(s) 154
TaiI ACGT 2 cut(s) 58, 384
TasI AATT 2 cut(s) 63, 290
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 3 cut(s) 252, 276, 400
Tru9I TTAA 3 cut(s) 252, 276, 400
TscAI CASTG 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 74, 185
TspRI CASTG 1 cut(s) 146
XapI RAATTY 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 1 cut(s) 324
Zsp2I ATGCAT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.