RchiOBHm_Chr7g0220201

Chromatin structure-remodeling complex subunit RSC1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016454
Physical Location & Seq
Forward (+)
39039421 .. 39039787
367 bp
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UTR
Exon/CDS
Intron
PRQ19710

Sequence Viewer

Length: 282 bp
ATGAAGTGTGTATCCTTCAACGGAAAGAATGAGCTCTATAAGTCTAATCATTATGATTATGATGTCCCAGCTGACAGCATTCTTAACACTTATAGTGTCCGCTCTTTTAAAAGTTACATAGAATTACCGGATGCAGATAATAATGTTTTCTTCACTAGATATACATACGACAATGTGGCTAAGAAGGTTGAAGATGCAGATGTTGATGTTTTTTGTCATTGTAAGATGCCGAATAACCTAGATAGACTCATGGTGCAGTGTAAAAACTACAAGGATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

93

Amino Acids

11.01

Weight (kDa)

5.55

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 102
AciI CCGC 1 cut(s) 100
AgsI TTSAA 2 cut(s) 19, 191
AluBI AGCT 2 cut(s) 34, 71
AluI AGCT 2 cut(s) 34, 71
Alw21I GWGCWC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BciVI GTATCC 1 cut(s) 22
BfaI CTAG 2 cut(s) 156, 239
BfuI GTATCC 1 cut(s) 22
BmsI GCATC 3 cut(s) 121, 184, 216
BsaWI WCCGGW 1 cut(s) 127
BseGI GGATG 1 cut(s) 136
BseYI CCCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 36
BspACI CCGC 1 cut(s) 100
BsrBI CCGCTC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 136
BsuI GTATCC 1 cut(s) 22
BtsCI GGATG 1 cut(s) 136
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 263
CviAII CATG 1 cut(s) 250
CviJI RGCY 3 cut(s) 34, 71, 179
CviKI_1 RGCY 3 cut(s) 34, 71, 179
DdeI CTNAG 1 cut(s) 180
DraI TTTAAA 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoT38I GRGCYC 1 cut(s) 36
FaeI CATG 1 cut(s) 253
FaiI YATR 8 cut(s) 39, 54, 60, 93, 119, 162, 166, 251
FaqI GGGAC 1 cut(s) 50
FatI CATG 1 cut(s) 249
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 36
FspBI CTAG 2 cut(s) 156, 239
GsaI CCCAGC 1 cut(s) 71
HapII CCGG 1 cut(s) 128
Hin1II CATG 1 cut(s) 253
HinfI GANTC 1 cut(s) 246
HpaII CCGG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 25, 178
HpyCH4V TGCA 3 cut(s) 134, 197, 256
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 1 cut(s) 253
LpnPI CCDG 2 cut(s) 81, 141
LweI GCATC 3 cut(s) 121, 184, 216
MaeI CTAG 2 cut(s) 156, 239
MaeIII GTNAC 1 cut(s) 113
MbiI CCGCTC 1 cut(s) 102
MboII GAAGA 2 cut(s) 142, 203
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 1 cut(s) 122
MlyI GAGTC 1 cut(s) 240
MseI TTAA 2 cut(s) 84, 108
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 128
Mva1269I GAATGC 1 cut(s) 78
NlaIII CATG 1 cut(s) 253
PctI GAATGC 1 cut(s) 78
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
Psp124BI GAGCTC 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 71
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 84, 108
SchI GAGTC 1 cut(s) 240
SduI GDGCHC 1 cut(s) 36
SetI ASST 4 cut(s) 36, 73, 189, 240
SfaNI GCATC 3 cut(s) 121, 184, 216
SgeI CNNG 5 cut(s) 80, 140, 168, 251, 262
Sse9I AATT 1 cut(s) 122
SsiI CCGC 1 cut(s) 100
SspMI CTAG 2 cut(s) 156, 239
SstI GAGCTC 1 cut(s) 36
TasI AATT 1 cut(s) 122
Tru1I TTAA 2 cut(s) 84, 108
Tru9I TTAA 2 cut(s) 84, 108
TscAI CASTG 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 1 cut(s) 263
XspI CTAG 2 cut(s) 156, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.