RchiOBHm_Chr7g0220441

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016454
Physical Location & Seq
Reverse (-)
39436140 .. 39436675
536 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19733

Sequence Viewer

Length: 450 bp
ATGCGTTTCTCAAATGGTTGTTCAGTTGCAGATTATGTGCTGTTGAAGGCTGAACGTGGTAAAATCTCATATATTGCTCGGATTCATCAAATATATATCAGGTGTGAAGATGTATCTCGAGAAGTGGATTTGAAAGTGCAGCGGTTCTATAGGCTTGATGATACTCAAATGAAGCATGTATCCATCAATGGAAAGAATGAGCTTTATAAGTCTATTCATTATGATTATGATGTCCCAGCTGACAGCATTCTTGACACTTATAGTGTCTGCACTTTTAAAAGTTACACAAAATTACCGGATGCAAATGAGAATGTTTTCTTCACTAGATATACATACGATCGGGTGGCTAAGAAGGTTGAAGATGTGGATGTTGATGTCTTTTGTCATTGTAAGATGCCGAATTACCCAGATCGACTCACGGTGCAGTGTAAAAACTGCAAGGATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

149

Amino Acids

17.64

Weight (kDa)

7.55

Isoelectric Point (pI)

22.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 8 - 122 3.6e-12 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
AciI CCGC 1 cut(s) 142
AgsI TTSAA 3 cut(s) 46, 133, 359
AluBI AGCT 2 cut(s) 202, 239
AluI AGCT 2 cut(s) 202, 239
Ama87I CYCGRG 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 139
Asp700I GAANNNNTTC 1 cut(s) 314
AvaI CYCGRG 1 cut(s) 117
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 191
BciVI GTATCC 1 cut(s) 190
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 148
BfuI GTATCC 1 cut(s) 190
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmeT110I CYCGRG 1 cut(s) 117
BmsI GCATC 2 cut(s) 289, 384
BsaWI WCCGGW 1 cut(s) 295
BseGI GGATG 2 cut(s) 304, 373
BseXI GCAGC 1 cut(s) 151
BseYI CCCAGC 1 cut(s) 235
BsgI GTGCAG 3 cut(s) 158, 253, 443
Bsh1285I CGRYCG 1 cut(s) 340
BsiEI CGRYCG 1 cut(s) 340
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 246
BsoBI CYCGRG 1 cut(s) 117
Bsp143I GATC 2 cut(s) 337, 409
BspACI CCGC 1 cut(s) 142
BssMI GATC 2 cut(s) 337, 409
Bst4CI ACNGT 1 cut(s) 421
BstDEI CTNAG 1 cut(s) 348
BstF5I GGATG 2 cut(s) 304, 373
BstKTI GATC 2 cut(s) 340, 412
BstMBI GATC 2 cut(s) 337, 409
BstMCI CGRYCG 1 cut(s) 340
BstNSI RCATGY 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 151
BsuI GTATCC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 304, 373
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 1 cut(s) 431
CviAII CATG 1 cut(s) 176
CviJI RGCY 5 cut(s) 50, 154, 202, 239, 347
CviKI_1 RGCY 5 cut(s) 50, 154, 202, 239, 347
DdeI CTNAG 1 cut(s) 348
DpnI GATC 2 cut(s) 339, 411
DpnII GATC 2 cut(s) 337, 409
DraI TTTAAA 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 117
FaeI CATG 1 cut(s) 179
FaqI GGGAC 1 cut(s) 218
FatI CATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 2 cut(s) 311, 380
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 1 cut(s) 324
GluI GCNGC 1 cut(s) 140
GsaI CCCAGC 1 cut(s) 239
HapII CCGG 1 cut(s) 296
Hin1II CATG 1 cut(s) 179
HinfI GANTC 2 cut(s) 82, 414
HpaII CCGG 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 3 cut(s) 117, 119, 251
HpyAV CCTTC 2 cut(s) 40, 346
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 6 cut(s) 29, 139, 270, 302, 424, 438
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 1 cut(s) 179
Kzo9I GATC 2 cut(s) 337, 409
LpnPI CCDG 4 cut(s) 85, 249, 309, 420
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 2 cut(s) 289, 384
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 281
MalI GATC 2 cut(s) 339, 411
MboI GATC 2 cut(s) 337, 409
MboII GAAGA 3 cut(s) 119, 310, 371
MluCI AATT 2 cut(s) 290, 400
MlyI GAGTC 1 cut(s) 408
MroXI GAANNNNTTC 1 cut(s) 314
MseI TTAA 1 cut(s) 276
MspA1I CMGCKG 2 cut(s) 142, 239
MspI CCGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 246
NdeII GATC 2 cut(s) 337, 409
NlaIII CATG 1 cut(s) 179
NspI RCATGY 1 cut(s) 179
PaeR7I CTCGAG 1 cut(s) 117
PctI GAATGC 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 141
Ple19I CGATCG 1 cut(s) 340
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
PsiI TTATAA 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 235
PvuI CGATCG 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 239
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 2 cut(s) 337, 409
SchI GAGTC 1 cut(s) 408
SetI ASST 5 cut(s) 58, 104, 204, 241, 357
SfaNI GCATC 2 cut(s) 289, 384
SfcI CTRYAG 1 cut(s) 148
Sfr274I CTCGAG 1 cut(s) 117
SlaI CTCGAG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 2 cut(s) 290, 400
SsiI CCGC 1 cut(s) 142
SspMI CTAG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 1 cut(s) 58
TaqI TCGA 2 cut(s) 118, 412
TasI AATT 2 cut(s) 290, 400
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 1 cut(s) 431
TseI GCWGC 1 cut(s) 139
TspDTI ATGAA 3 cut(s) 74, 185, 206
TspRI CASTG 1 cut(s) 431
XceI RCATGY 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.