RchiOBHm_Chr7g0220211

Bromo adjacent homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016454
Physical Location & Seq
Reverse (-)
39051571 .. 39051972
402 bp
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UTR
Exon/CDS
Intron
PRQ19711

Sequence Viewer

Length: 402 bp
ATGGGTTTCTCAAATAGTTGTTCAATTAGGGATTATGTGCTGTTGAAGGTTGAACGTGGTAAAATTCCATATATTGCTCGGATTCATCAAATATATATCAGTTGTGAAGATGTATCTCAAGAAGTGCATCTGAAAGTGCAGTGGTTCTATAGGCTTGAGGATACTCAAATGAAGTGTATATCCTTCAACGGAAAGAATGAGCTCTATAAGTCTAATCATTATGATTATTATGTCCCAGCTGACAGCATTCTTAACACTTGTAGTGTCCGCTCTTTTAAAAGCTACATAGAATTACCGGATGCAGATGAGAATGTTTTTTTCACTAGATATACATATGACAATGTGGCTAAGAAGTTTGAAGATGCAGATGTTGATGTGTACGTGACTTTGCTTTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

133

Amino Acids

15.75

Weight (kDa)

5.31

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 9 - 121 4.1e-17 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 270
AciI CCGC 1 cut(s) 268
AcsI RAATTY 1 cut(s) 63
AfaI GTAC 1 cut(s) 380
AgsI TTSAA 5 cut(s) 24, 46, 53, 187, 359
AluBI AGCT 3 cut(s) 202, 239, 282
AluI AGCT 3 cut(s) 202, 239, 282
Alw21I GWGCWC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 63
ArsI GACNNNNNNTTYG 1 cut(s) 376
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 204
BciVI GTATCC 1 cut(s) 154
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 148
BfuI GTATCC 1 cut(s) 154
BmsI GCATC 3 cut(s) 136, 289, 352
BpuEI CTTGAG 2 cut(s) 102, 176
BsaAI YACGTR 1 cut(s) 382
BsaWI WCCGGW 1 cut(s) 295
BseGI GGATG 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 235
BsgI GTGCAG 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 204
BspACI CCGC 1 cut(s) 268
BsrBI CCGCTC 1 cut(s) 270
BstBAI YACGTR 1 cut(s) 382
BstDEI CTNAG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 148
BsuI GTATCC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 146
Csp6I GTAC 1 cut(s) 379
CviJI RGCY 5 cut(s) 154, 202, 239, 282, 347
CviKI_1 RGCY 5 cut(s) 154, 202, 239, 282, 347
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 1 cut(s) 348
DraI TTTAAA 1 cut(s) 277
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 204
FaqI GGGAC 1 cut(s) 218
FauNDI CATATG 1 cut(s) 334
FokI GGATG 1 cut(s) 311
FriOI GRGCYC 1 cut(s) 204
FspBI CTAG 1 cut(s) 324
GsaI CCCAGC 1 cut(s) 239
HapII CCGG 1 cut(s) 296
HinfI GANTC 1 cut(s) 82
HpaII CCGG 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 2 cut(s) 81, 132
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 379
HpyAV CCTTC 2 cut(s) 40, 193
HpyCH4IV ACGT 2 cut(s) 55, 381
HpyCH4V TGCA 4 cut(s) 127, 139, 302, 365
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 2 cut(s) 55, 381
LpnPI CCDG 2 cut(s) 249, 309
LweI GCATC 3 cut(s) 136, 289, 352
MaeI CTAG 1 cut(s) 324
MaeII ACGT 2 cut(s) 55, 381
MaeIII GTNAC 1 cut(s) 382
MbiI CCGCTC 1 cut(s) 270
MboII GAAGA 2 cut(s) 119, 371
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 3 cut(s) 24, 63, 290
MnlI CCTC 1 cut(s) 151
MseI TTAA 3 cut(s) 252, 276, 400
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 246
NdeI CATATG 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 382
PctI GAATGC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 382
Psp124BI GAGCTC 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 3 cut(s) 252, 276, 400
SduI GDGCHC 1 cut(s) 204
SetI ASST 6 cut(s) 51, 58, 204, 241, 284, 384
SfaNI GCATC 3 cut(s) 136, 289, 352
SfcI CTRYAG 1 cut(s) 148
SgeI CNNG 9 cut(s) 68, 90, 131, 167, 248, 270, 308, 336, 394
SmlI CTYRAG 2 cut(s) 117, 155
SmoI CTYRAG 2 cut(s) 117, 155
Sse9I AATT 3 cut(s) 24, 63, 290
SsiI CCGC 1 cut(s) 268
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 1 cut(s) 204
TaiI ACGT 2 cut(s) 58, 384
TasI AATT 3 cut(s) 24, 63, 290
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 3 cut(s) 252, 276, 400
Tru9I TTAA 3 cut(s) 252, 276, 400
TscAI CASTG 1 cut(s) 146
TseFI GTSAC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 2 cut(s) 74, 185
TspGWI ACGGA 1 cut(s) 204
TspRI CASTG 1 cut(s) 146
XapI RAATTY 1 cut(s) 63
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.