Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007195

Physical Location & Seq

Genomic Coordinates Forward (+)

39876957 .. 39882026

Gene Structure 5070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCGGCATCAACTTCTTGTGCCAGTAAGAGCCCATTTCCCATGAAAGACACAACCTCTAACTTAATTCCATACCCAGCACCTCTAGCTAAATATGAGGAGGTTGCAGTGAATCCTAAGCTGTTCATGTCTACTTTGGAAAAGCTCCATACTTCAATGGGAACCAAGTTTATGATCCCTATAATAGGAGGAAGGGAGTTAGACTTGCATCGATTGTTTGTGGAGGTAACTTCCCGTGGTGGTATGGCAAAGATTGTTAGAGATAGAAGATGGAAGGAAGTTACCGCTGTATTCAACTTCCCCTCCACAGCTACAAATGCTTCTTTTGTGCTGCGGAAATATTATAATTCGTTGCTTCTCCACTATGAACAAATATACTATTTCAAAGCTCAAGCATGGAATCCTCTCTCTTCTGATATTTCACAGAACCCTAACATGACACCCGGTCCAGCTCGGGGAGGAACTAAACGAAAATCAACTGACGCTCAGACACTTCTGCTTCAGCAACCACAGAAAATTCCAGAGATTCCTGGAGCCGGGACACCAGCACCGTCAGAAGATGACACTGTGTTAGGGTTTATAGATGGGAAATTCGAAAGCGGATATCTTGTTACCGTCACCAAAGGCACGGAGAAGTTAAGTGGTGTACTGTACCAAGTTCCACAGAATCCAGTACAGGAGGTTCCACAAGGCCCACAGAATTATAGCATGGTGGTCAACAGAAACGACAGTACCTCAGCTGTACCTGTTCCCCATCGTCGTCGACGAAGGAAGAAATCTGAGATAAAAAGGAGGGACCCTGCTCACCCAAAACCGAACAGAAGTGGGTATAACTTTTTCTTTGCTGAACAGCATGCAAGGCTGAAGCCACTTCATCCGGGGAAGGATAGAGAGATAAGTAGAATGATTGGTGAATTGTGGAATAAATTGAAGGAGTCTGATAAAGGAGTGTATCAGGAGAAAGCTGTGAAAGATAAAGAGAGATACCGAGTAGAAATGGAGGAATACCGGGAGAGGTTGAAGGCTGCTCAAGTCATCAGTGATGCAGTCCCACTACAGCAGCGGTCTCCTGAAGCAGACGCAAGTCTGGCAGAATCAGAAACCAAGATTGAAGAAACCGAGCCTGGCGACTCTCCCGAAACTGCAGATGAAAGTAGCGAGAGTAGTTCTAGCAAATCAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000217 GO:0000400 GO:0000902 GO:0000904 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042995 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

395

Amino Acids

44.39

Weight (kDa)

9.2

Isoelectric Point (pI)

55.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	39 - 123	4.8e-22	ARID/BRIGHT DNA binding domain
HMG_box_2	PF09011	267 - 336	2.2e-10	HMG-box domain
HMG_box	PF00505	270 - 337	2.7e-15	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04880
fragaria_vesca	FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370 FvH4_4g16370
malus_domestica	MD04G1008800.v1.1
prunus_persica	Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1 Prupe.1G008100_v2.0.a1
pyrus_communis	pycom04g00660
rosa_chinensis	RchiOBHm_Chr4g0415261
rosa_laevigata	RLG00000008083
rosa_multiflora	Rmu_sc0003551.1_g000023
rosa_roxburghii	Rroxscaffold_5G00359070
rosa_rugosa	Rorug04G0132600 Rorug04G0132700 Rorug04G0132800
rosa_samantha	Rh4AG193400 Rh4BG192000 Rh4CG204500 Rh4DG191300
rosa_wichuraiana	Rw4G016460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AccI	GTMKAC	2 cut(s)	131, 763
AciI	CCGC	5 cut(s)	5, 285, 334, 600, 1063
AclWI	GGATC	1 cut(s)	169
AcsI	RAATTY	2 cut(s)	516, 590
AcuI	CTGAAG	3 cut(s)	485, 884, 1092
AfaI	GTAC	5 cut(s)	648, 653, 675, 733, 744
AfiI	CCNNNNNNNGG	3 cut(s)	185, 455, 536
AgsI	TTSAA	6 cut(s)	156, 295, 385, 931, 1021, 1112
AhdI	GACNNNNNGTC	1 cut(s)	444
AjnI	CCWGG	2 cut(s)	529, 1123
AluBI	AGCT	8 cut(s)	89, 121, 145, 311, 389, 452, 740, 965
AluI	AGCT	8 cut(s)	89, 121, 145, 311, 389, 452, 740, 965
Alw26I	GTCTC	1 cut(s)	1071
AlwI	GGATC	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	453
AoxI	GGCC	1 cut(s)	691
ApeKI	GCWGC	3 cut(s)	331, 1025, 1060
ApoI	RAATTY	2 cut(s)	516, 590
AspS9I	GGNCC	3 cut(s)	446, 692, 796
AsuC2I	CCSGG	4 cut(s)	444, 538, 879, 1010
AsuHPI	GGTGA	3 cut(s)	610, 797, 923
AsuII	TTCGAA	1 cut(s)	594
AvaI	CYCGRG	1 cut(s)	453
AvaII	GGWCC	2 cut(s)	446, 796
BaeI	ACNNNNGTAYC	2 cut(s)	715, 748
BanII	GRGCYC	1 cut(s)	35
BbvCI	CCTCAGC	1 cut(s)	736
BbvI	GCAGC	3 cut(s)	318, 1012, 1072
BccI	CCATC	3 cut(s)	264, 578, 762
BciT130I	CCWGG	2 cut(s)	531, 1125
BcnI	CCSGG	4 cut(s)	444, 538, 879, 1010
BcoDI	GTCTC	1 cut(s)	1071
BfaI	CTAG	2 cut(s)	86, 1170
BfmI	CTRYAG	2 cut(s)	1055, 1143
BisI	GCNGC	4 cut(s)	6, 332, 1026, 1061
BlsI	GCNGC	4 cut(s)	7, 333, 1027, 1062
Bme1390I	CCNGG	6 cut(s)	444, 531, 538, 879, 1010, 1125
Bme18I	GGWCC	2 cut(s)	446, 796
BmeRI	GACNNNNNGTC	1 cut(s)	444
BmeT110I	CYCGRG	1 cut(s)	453
BmgT120I	GGNCC	3 cut(s)	446, 692, 796
BmiI	GGNNCC	5 cut(s)	163, 535, 684, 797, 798
BmrFI	CCNGG	6 cut(s)	444, 531, 538, 879, 1010, 1125
BmsI	GCATC	3 cut(s)	17, 217, 1033
BoxI	GACNNNNGTC	1 cut(s)	1083
BpmI	CTGGAG	1 cut(s)	552
Bpu10I	CCTNAGC	2 cut(s)	117, 736
Bpu14I	TTCGAA	1 cut(s)	594
BpuEI	CTTGAG	2 cut(s)	375, 1014
BpuMI	CCSGG	4 cut(s)	444, 538, 879, 1010
Bsa29I	ATCGAT	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	1071
BsaJI	CCNNGG	2 cut(s)	235, 878
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 455, 536
Bse1I	ACTGG	2 cut(s)	24, 671
BseBI	CCWGG	2 cut(s)	531, 1125
BseCI	ATCGAT	1 cut(s)	211
BseDI	CCNNGG	2 cut(s)	235, 878
BseGI	GGATG	1 cut(s)	874
BseLI	CCNNNNNNNGG	3 cut(s)	185, 455, 536
BseMII	CTCAG	3 cut(s)	500, 750, 771
BseNI	ACTGG	2 cut(s)	24, 671
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	318, 1012, 1072
BseYI	CCCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	693
BshVI	ATCGAT	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	4 cut(s)	444, 537, 878, 1009
BslFI	GGGAC	3 cut(s)	553, 809, 1034
BslI	CCNNNNNNNGG	3 cut(s)	185, 455, 536
BsmAI	GTCTC	1 cut(s)	1071
BsmFI	GGGAC	3 cut(s)	553, 809, 1034
BsnI	GGCC	1 cut(s)	693
Bso31I	GGTCTC	1 cut(s)	1071
BsoBI	CYCGRG	1 cut(s)	453
Bsp119I	TTCGAA	1 cut(s)	594
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	5 cut(s)	5, 285, 334, 600, 1063
BspANI	GGCC	1 cut(s)	693
BspCNI	CTCAG	3 cut(s)	499, 749, 772
BspDI	ATCGAT	1 cut(s)	211
BspLI	GGNNCC	5 cut(s)	163, 535, 684, 797, 798
BspMAI	CTGCAG	1 cut(s)	1147
BspPI	GGATC	1 cut(s)	169
BspT104I	TTCGAA	1 cut(s)	594
BspTNI	GGTCTC	1 cut(s)	1071
BsrI	ACTGG	2 cut(s)	24, 671
BssECI	CCNNGG	2 cut(s)	235, 878
BssMI	GATC	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	531, 1125
Bst4CI	ACNGT	5 cut(s)	552, 568, 616, 651, 731
Bst6I	CTCTTC	1 cut(s)	415
BstBI	TTCGAA	1 cut(s)	594
BstC8I	GCNNGC	1 cut(s)	855
BstDEI	CTNAG	4 cut(s)	117, 486, 736, 780
BstDSI	CCRYGG	1 cut(s)	235
BstENI	CCTNNNNNAGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	874
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	1071
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 317, 859, 1088
BstNI	CCWGG	2 cut(s)	531, 1125
BstNSI	RCATGY	1 cut(s)	857
BstPAI	GACNNNNGTC	1 cut(s)	1083
BstSCI	CCNGG	6 cut(s)	442, 529, 536, 877, 1008, 1123
BstSFI	CTRYAG	2 cut(s)	1055, 1143
BstV1I	GCAGC	3 cut(s)	318, 1012, 1072
Bsu15I	ATCGAT	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	693
BsuTUI	ATCGAT	1 cut(s)	211
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	874
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	3 cut(s)	114, 564, 1045
Cac8I	GCNNGC	1 cut(s)	855
Cfr13I	GGNCC	3 cut(s)	446, 692, 796
ClaI	ATCGAT	1 cut(s)	211
CseI	GACGC	2 cut(s)	491, 1088
Csp6I	GTAC	5 cut(s)	647, 652, 674, 732, 743
CviAII	CATG	6 cut(s)	43, 127, 396, 436, 709, 854
CviQI	GTAC	5 cut(s)	647, 652, 674, 732, 743
DdeI	CTNAG	4 cut(s)	117, 486, 736, 780
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DriI	GACNNNNNGTC	1 cut(s)	444
Eam1104I	CTCTTC	1 cut(s)	415
Eam1105I	GACNNNNNGTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	1071
Eco32I	GATATC	1 cut(s)	605
Eco47I	GGWCC	2 cut(s)	446, 796
Eco57I	CTGAAG	3 cut(s)	485, 884, 1092
Eco88I	CYCGRG	1 cut(s)	453
EcoNI	CCTNNNNNAGG	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	796
EcoRII	CCWGG	2 cut(s)	529, 1123
EcoRV	GATATC	1 cut(s)	605
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	6 cut(s)	46, 130, 399, 439, 712, 857
FaqI	GGGAC	3 cut(s)	553, 809, 1034
FatI	CATG	6 cut(s)	42, 126, 395, 435, 708, 853
FblI	GTMKAC	2 cut(s)	131, 763
Fnu4HI	GCNGC	4 cut(s)	6, 332, 1026, 1061
FokI	GGATG	1 cut(s)	861
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	4 cut(s)	6, 332, 1026, 1061
FspBI	CTAG	2 cut(s)	86, 1170
GluI	GCNGC	4 cut(s)	6, 332, 1026, 1061
GsaI	CCCAGC	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	1 cut(s)	693
HapII	CCGG	4 cut(s)	444, 537, 878, 1009
HgaI	GACGC	2 cut(s)	491, 1088
Hin1II	CATG	6 cut(s)	46, 130, 399, 439, 712, 857
HincII	GTYRAC	2 cut(s)	718, 764
HindII	GTYRAC	2 cut(s)	718, 764
HinfI	GANTC	7 cut(s)	112, 400, 526, 667, 935, 1094, 1130
HpaII	CCGG	4 cut(s)	444, 537, 878, 1009
HphI	GGTGA	3 cut(s)	610, 797, 923
Hpy166II	GTNNAC	4 cut(s)	132, 647, 718, 764
Hpy188I	TCNGA	7 cut(s)	415, 489, 556, 781, 940, 1099, 1180
Hpy188III	TCNNGA	4 cut(s)	521, 956, 1070, 1136
Hpy8I	GTNNAC	4 cut(s)	132, 647, 718, 764
Hpy99I	CGWCG	3 cut(s)	762, 765, 768
HpyAV	CCTTC	6 cut(s)	186, 268, 762, 877, 925, 1015
HpyCH4III	ACNGT	5 cut(s)	552, 568, 616, 651, 731
HpyCH4V	TGCA	5 cut(s)	107, 208, 857, 1046, 1145
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 317, 859, 1088
HpyF3I	CTNAG	4 cut(s)	117, 486, 736, 780
Hsp92II	CATG	6 cut(s)	46, 130, 399, 439, 712, 857
KflI	GGGWCCC	1 cut(s)	796
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	2 cut(s)	150, 533
Lsp1109I	GCAGC	3 cut(s)	318, 1012, 1072
LweI	GCATC	3 cut(s)	17, 217, 1033
MaeI	CTAG	2 cut(s)	86, 1170
MaeIII	GTNAC	4 cut(s)	226, 280, 610, 616
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	5 cut(s)	279, 402, 569, 784, 1124
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	7 cut(s)	66, 346, 516, 590, 700, 914, 926
MlyI	GAGTC	2 cut(s)	944, 1124
MseI	TTAA	2 cut(s)	65, 638
MspA1I	CMGCKG	3 cut(s)	287, 740, 1063
MspI	CCGG	4 cut(s)	444, 537, 878, 1009
MspR9I	CCNGG	6 cut(s)	444, 531, 538, 879, 1010, 1125
MvaI	CCWGG	2 cut(s)	531, 1125
MwoI	GCNNNNNNNGC	4 cut(s)	86, 317, 859, 1088
NciI	CCSGG	4 cut(s)	444, 538, 879, 1010
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	6 cut(s)	46, 130, 399, 439, 712, 857
NlaIV	GGNNCC	5 cut(s)	163, 535, 684, 797, 798
NmuCI	GTSAC	1 cut(s)	616
NspI	RCATGY	1 cut(s)	857
NspV	TTCGAA	1 cut(s)	594
PaeI	GCATGC	1 cut(s)	857
PcsI	WCGNNNNNNNCGW	1 cut(s)	763
PfeI	GAWTC	5 cut(s)	112, 400, 526, 667, 1094
PfoI	TCCNGGA	1 cut(s)	529
PkrI	GCNGC	4 cut(s)	7, 333, 1027, 1062
PleI	GAGTC	2 cut(s)	943, 1124
PpsI	GAGTC	2 cut(s)	943, 1124
PpuMI	RGGWCCY	1 cut(s)	796
PshAI	GACNNNNGTC	1 cut(s)	1083
PsiI	TTATAA	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	796
Psp6I	CCWGG	2 cut(s)	529, 1123
PspFI	CCCAGC	1 cut(s)	76
PspGI	CCWGG	2 cut(s)	529, 1123
PspN4I	GGNNCC	5 cut(s)	163, 535, 684, 797, 798
PspPI	GGNCC	3 cut(s)	446, 692, 796
PspPPI	RGGWCCY	1 cut(s)	796
PsrI	GAACNNNNNNTAC	2 cut(s)	666, 698
PstI	CTGCAG	1 cut(s)	1147
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	5 cut(s)	648, 653, 675, 733, 744
RsaNI	GTAC	5 cut(s)	647, 652, 674, 732, 743
SalI	GTCGAC	1 cut(s)	762
SaqAI	TTAA	2 cut(s)	65, 638
SatI	GCNGC	4 cut(s)	6, 332, 1026, 1061
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	3 cut(s)	446, 692, 796
SchI	GAGTC	2 cut(s)	944, 1124
ScrFI	CCNGG	6 cut(s)	444, 531, 538, 879, 1010, 1125
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	3 cut(s)	17, 217, 1033
SfcI	CTRYAG	2 cut(s)	1055, 1143
SfuI	TTCGAA	1 cut(s)	594
SgrDI	CGTCGACG	1 cut(s)	762
SinI	GGWCC	2 cut(s)	446, 796
SmlI	CTYRAG	2 cut(s)	390, 1029
SmoI	CTYRAG	2 cut(s)	390, 1029
SphI	GCATGC	1 cut(s)	857
Sse9I	AATT	7 cut(s)	66, 346, 516, 590, 700, 914, 926
SsiI	CCGC	5 cut(s)	5, 285, 334, 600, 1063
SspI	AATATT	1 cut(s)	341
SspMI	CTAG	2 cut(s)	86, 1170
StyD4I	CCNGG	6 cut(s)	442, 529, 536, 877, 1008, 1123
TaaI	ACNGT	5 cut(s)	552, 568, 616, 651, 731
TaqI	TCGA	3 cut(s)	211, 594, 763
TasI	AATT	7 cut(s)	66, 346, 516, 590, 700, 914, 926
TatI	WGTACW	2 cut(s)	646, 673
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	5 cut(s)	112, 400, 526, 667, 1094
Tru1I	TTAA	2 cut(s)	65, 638
Tru9I	TTAA	2 cut(s)	65, 638
TscAI	CASTG	3 cut(s)	114, 571, 1045
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	3 cut(s)	331, 1025, 1060
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	5 cut(s)	59, 115, 381, 863, 1164
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	3 cut(s)	114, 571, 1045
VpaK11BI	GGWCC	2 cut(s)	446, 796
XagI	CCTNNNNNAGG	1 cut(s)	183
XapI	RAATTY	2 cut(s)	516, 590
XceI	RCATGY	1 cut(s)	857
XmiI	GTMKAC	2 cut(s)	131, 763
XspI	CTAG	2 cut(s)	86, 1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.