Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014604

Physical Location & Seq

Genomic Coordinates Reverse (-)

43195484 .. 43198016

Gene Structure 2533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAAAGGATTATATGAAGAGGCCAAACCATCACCCCAAATTTCAAACTCCGCGTCAACTAGCGGCCATTCTAAAGAAGATGATCCAGAAATGGGTTCCAATGCATTGTCAAACAGTGCAGATCATCATGTCTTGAACAACTCTGCCTTCTTCTGTTTTCCAAGCGGAATGAATTTAAATCTCGTGCGTGCGGTTGTGGCGGAGATGGTTGGAACTTTTATCTTGATGTTCTGTGTATGTGGGATCATAGCAAGCACAGAGCTGCTGAGAGGAGATGTAGGTCTTATGGAGTATGCATCCACAGCGGGTTTAACAGTTGTAGTTGTGATTTTCTCCGTAGGCTCCATCTCTGGTGCTCATGTTAACCCTGCTGTCACAGTAGCCTTTGCAACCTTTGGTCATTTCCCATGGTCCAGGGTTCCTCTATACACATTGGCACAAACATTGGGTTCTGTTCTGGCAGCATTCGTTGGAAAGCTTGTGTATGGCATAAAACCAGATCTCATGATCACCAAACCAGTACAAGGATGTGTTTCTGCCTTCTGGGTTGAGCTTATTGCGACTTTCATTGTTTTGTTCCTTGCTGCTTCTATGACACATCATGCTCAAGCTGTTGGTCCTTTATCTGGGTTTGTTGTTGGCATTGCCATTGGACTAGCTGTGCTAATCACAGGGCCTGTTTCAGGAGGATCATTGAACCCAGCAAGGTCCCTCGGACCAGCGATTGTTTCATGGAACTTCAAGGACATTTGGATATACATTTGTGCCCCAACCATTGGAGCTGTTGCAGGGGCTCTCCTTTTTCAAGTTTTAAGACTCAGAATCCCACCATGCAATCCCAGCCTCACCTCCTCTCCTAATACCTGTCTACTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0008150 GO:0008509 GO:0015075 GO:0015103 GO:0015238 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0035445 GO:0042044 GO:0042221 GO:0042493 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

292

Amino Acids

30.51

Weight (kDa)

6.64

Isoelectric Point (pI)

21.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	59 - 268	3.6e-48	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06100 AT3G06100 AT3G06100
fragaria_vesca	FvH4_4g14730 FvH4_4g14730
malus_domestica	MD16G1185600.v1.1
prunus_persica	Prupe.1G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0417871
rosa_laevigata	RLG00000007891
rosa_multiflora	Rmu_sc0004911.1_g000004
rosa_roxburghii	Rroxscaffold_5G00361290
rosa_rugosa	Rorug04G0150100
rosa_samantha	Rh4AG212300 Rh4BG218700 Rh4CG223300 Rh4DG210200
rosa_wichuraiana	Rw4G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	776
AccI	GTMKAC	1 cut(s)	868
AccII	CGCG	1 cut(s)	53
AciI	CCGC	6 cut(s)	51, 63, 165, 191, 200, 305
AclWI	GGATC	3 cut(s)	77, 251, 697
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	39, 172
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	5 cut(s)	92, 524, 626, 683, 776
AgsI	TTSAA	5 cut(s)	45, 136, 697, 742, 806
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	6 cut(s)	262, 478, 553, 611, 659, 782
AluI	AGCT	6 cut(s)	262, 478, 553, 611, 659, 782
Alw21I	GWGCWC	1 cut(s)	358
AlwI	GGATC	3 cut(s)	77, 251, 697
AlwNI	CAGNNNCTG	1 cut(s)	677
AoxI	GGCC	3 cut(s)	21, 64, 674
ApeKI	GCWGC	3 cut(s)	262, 461, 584
ApoI	RAATTY	2 cut(s)	39, 172
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspS9I	GGNCC	5 cut(s)	411, 617, 674, 708, 716
AsuHPI	GGTGA	3 cut(s)	24, 502, 838
AvaII	GGWCC	4 cut(s)	411, 617, 708, 716
BaeGI	GKGCMC	1 cut(s)	769
BanII	GRGCYC	1 cut(s)	796
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	3 cut(s)	249, 473, 571
BccI	CCATC	3 cut(s)	37, 199, 353
BciT130I	CCWGG	1 cut(s)	415
BclI	TGATCA	1 cut(s)	507
BfaI	CTAG	2 cut(s)	60, 656
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	4 cut(s)	64, 263, 462, 585
BlsI	GCNGC	4 cut(s)	65, 264, 463, 586
Bme1390I	CCNGG	1 cut(s)	415
Bme18I	GGWCC	4 cut(s)	411, 617, 708, 716
BmgT120I	GGNCC	5 cut(s)	411, 617, 674, 708, 716
BmiI	GGNNCC	4 cut(s)	97, 343, 420, 710
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	591
BsaJI	CCNNGG	3 cut(s)	407, 414, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	838, 868
Bsc4I	CCNNNNNNNGG	5 cut(s)	92, 524, 626, 683, 776
Bse1I	ACTGG	1 cut(s)	518
Bse3DI	GCAATG	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	3 cut(s)	407, 414, 712
BseGI	GGATG	2 cut(s)	296, 533
BseLI	CCNNNNNNNGG	5 cut(s)	92, 524, 626, 683, 776
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	2 cut(s)	257, 832
BseNI	ACTGG	1 cut(s)	518
BseRI	GAGGAG	2 cut(s)	285, 841
BseSI	GKGCMC	1 cut(s)	769
BseXI	GCAGC	3 cut(s)	249, 473, 571
BseYI	CCCAGC	2 cut(s)	700, 839
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	3 cut(s)	23, 66, 676
BsiHKAI	GWGCWC	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	694
BslI	CCNNNNNNNGG	5 cut(s)	92, 524, 626, 683, 776
BsmFI	GGGAC	1 cut(s)	694
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	3 cut(s)	23, 66, 676
Bsp1286I	GDGCHC	3 cut(s)	358, 769, 796
Bsp143I	GATC	6 cut(s)	82, 121, 243, 499, 507, 689
Bsp19I	CCATGG	1 cut(s)	407
BspACI	CCGC	6 cut(s)	51, 63, 165, 191, 200, 305
BspANI	GGCC	3 cut(s)	23, 66, 676
BspCNI	CTCAG	2 cut(s)	258, 831
BspFNI	CGCG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	4 cut(s)	97, 343, 420, 710
BspPI	GGATC	3 cut(s)	77, 251, 697
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	518
BssECI	CCNNGG	3 cut(s)	407, 414, 712
BssMI	GATC	6 cut(s)	82, 121, 243, 499, 507, 689
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	407
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	3 cut(s)	116, 316, 379
Bst6I	CTCTTC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	189, 253
BstDEI	CTNAG	2 cut(s)	266, 818
BstDSI	CCRYGG	1 cut(s)	407
BstENI	CCTNNNNNAGG	1 cut(s)	681
BstF5I	GGATG	2 cut(s)	296, 533
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	6 cut(s)	85, 124, 246, 502, 510, 692
BstMBI	GATC	6 cut(s)	82, 121, 243, 499, 507, 689
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 302, 840
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	413
BstSLI	GKGCMC	1 cut(s)	769
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	3 cut(s)	249, 473, 571
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuRI	GGCC	3 cut(s)	23, 66, 676
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	296, 533
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	189, 253
CaiI	CAGNNNCTG	1 cut(s)	677
CciI	TCATGA	1 cut(s)	504
Cfr13I	GGNCC	5 cut(s)	411, 617, 674, 708, 716
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	7 cut(s)	128, 359, 408, 505, 602, 732, 831
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	2 cut(s)	266, 818
DpnI	GATC	6 cut(s)	84, 123, 245, 501, 509, 691
DpnII	GATC	6 cut(s)	82, 121, 243, 499, 507, 689
DraI	TTTAAA	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	796
Eco47I	GGWCC	4 cut(s)	411, 617, 708, 716
EcoNI	CCTNNNNNAGG	1 cut(s)	681
EcoO109I	RGGNCCY	2 cut(s)	674, 708
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	407
EcoT22I	ATGCAT	2 cut(s)	106, 298
EcoT38I	GRGCYC	1 cut(s)	796
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	7 cut(s)	131, 362, 411, 508, 605, 735, 834
FaqI	GGGAC	1 cut(s)	694
FatI	CATG	7 cut(s)	127, 358, 407, 504, 601, 731, 830
FauI	CCCGC	1 cut(s)	298
FbaI	TGATCA	1 cut(s)	507
FblI	GTMKAC	1 cut(s)	868
Fnu4HI	GCNGC	4 cut(s)	64, 263, 462, 585
FokI	GGATG	2 cut(s)	283, 540
FriOI	GRGCYC	1 cut(s)	796
Fsp4HI	GCNGC	4 cut(s)	64, 263, 462, 585
FspBI	CTAG	2 cut(s)	60, 656
GluI	GCNGC	4 cut(s)	64, 263, 462, 585
GsaI	CCCAGC	2 cut(s)	704, 843
HaeIII	GGCC	3 cut(s)	23, 66, 676
HgaI	GACGC	1 cut(s)	42
Hin1II	CATG	7 cut(s)	131, 362, 411, 508, 605, 735, 834
HincII	GTYRAC	2 cut(s)	57, 364
HindII	GTYRAC	2 cut(s)	57, 364
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	2 cut(s)	816, 822
HpaI	GTTAAC	1 cut(s)	364
HphI	GGTGA	3 cut(s)	24, 502, 838
Hpy166II	GTNNAC	3 cut(s)	57, 364, 869
Hpy188I	TCNGA	2 cut(s)	716, 821
Hpy188III	TCNNGA	5 cut(s)	86, 133, 223, 505, 684
Hpy8I	GTNNAC	3 cut(s)	57, 364, 869
HpyAV	CCTTC	2 cut(s)	157, 550
HpyCH4III	ACNGT	3 cut(s)	116, 316, 379
HpyCH4V	TGCA	6 cut(s)	104, 119, 296, 389, 788, 834
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 302, 840
HpyF3I	CTNAG	2 cut(s)	266, 818
Hsp92II	CATG	7 cut(s)	131, 362, 411, 508, 605, 735, 834
Ksp22I	TGATCA	1 cut(s)	507
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	6 cut(s)	82, 121, 243, 499, 507, 689
LmnI	GCTCC	2 cut(s)	347, 779
Lsp1109I	GCAGC	3 cut(s)	249, 473, 571
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	2 cut(s)	60, 656
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	6 cut(s)	84, 123, 245, 501, 509, 691
MboI	GATC	6 cut(s)	82, 121, 243, 499, 507, 689
MboII	GAAGA	3 cut(s)	29, 89, 142
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	3 cut(s)	358, 769, 796
MluCI	AATT	2 cut(s)	39, 172
MlyI	GAGTC	1 cut(s)	810
MmeI	TCCRAC	2 cut(s)	190, 451
MnlI	CCTC	8 cut(s)	13, 263, 432, 680, 722, 854, 859, 862
Mph1103I	ATGCAT	2 cut(s)	106, 298
MseI	TTAA	4 cut(s)	176, 311, 363, 812
MspA1I	CMGCKG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	415
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	197, 302, 840
NcoI	CCATGG	1 cut(s)	407
NdeII	GATC	6 cut(s)	82, 121, 243, 499, 507, 689
NlaIII	CATG	7 cut(s)	131, 362, 411, 508, 605, 735, 834
NlaIV	GGNNCC	4 cut(s)	97, 343, 420, 710
NmuCI	GTSAC	1 cut(s)	373
NsiI	ATGCAT	2 cut(s)	106, 298
PagI	TCATGA	1 cut(s)	504
PctI	GAATGC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	822
PflMI	CCANNNNNTGG	1 cut(s)	776
PkrI	GCNGC	4 cut(s)	65, 264, 463, 586
PleI	GAGTC	1 cut(s)	810
PpsI	GAGTC	1 cut(s)	810
PpuMI	RGGWCCY	1 cut(s)	708
Psp5II	RGGWCCY	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	413
PspFI	CCCAGC	2 cut(s)	700, 839
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	4 cut(s)	97, 343, 420, 710
PspPI	GGNCC	5 cut(s)	411, 617, 674, 708, 716
PspPPI	RGGWCCY	1 cut(s)	708
PstNI	CAGNNNCTG	1 cut(s)	677
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
SaqAI	TTAA	4 cut(s)	176, 311, 363, 812
SatI	GCNGC	4 cut(s)	64, 263, 462, 585
Sau3AI	GATC	6 cut(s)	82, 121, 243, 499, 507, 689
Sau96I	GGNCC	5 cut(s)	411, 617, 674, 708, 716
SchI	GAGTC	1 cut(s)	810
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	3 cut(s)	358, 769, 796
SfaNI	GCATC	1 cut(s)	305
SinI	GGWCC	4 cut(s)	411, 617, 708, 716
SmiI	ATTTAAAT	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	606
SmoI	CTYRAG	1 cut(s)	606
Sse9I	AATT	2 cut(s)	39, 172
SsiI	CCGC	6 cut(s)	51, 63, 165, 191, 200, 305
SspMI	CTAG	2 cut(s)	60, 656
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	407
SwaI	ATTTAAAT	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	116, 316, 379
TasI	AATT	2 cut(s)	39, 172
TatI	WGTACW	1 cut(s)	520
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	822
Tru1I	TTAA	4 cut(s)	176, 311, 363, 812
Tru9I	TTAA	4 cut(s)	176, 311, 363, 812
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	3 cut(s)	262, 461, 584
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	5 cut(s)	17, 30, 185, 556, 720
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	1 cut(s)	121
Van91I	CCANNNNNTGG	1 cut(s)	776
VpaK11BI	GGWCC	4 cut(s)	411, 617, 708, 716
XagI	CCTNNNNNAGG	1 cut(s)	681
XapI	RAATTY	2 cut(s)	39, 172
XmiI	GTMKAC	1 cut(s)	868
XspI	CTAG	2 cut(s)	60, 656
Zsp2I	ATGCAT	2 cut(s)	106, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.