RchiOBHm_Chr4g0425061

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018546
Physical Location & Seq
Forward (+)
50747387 .. 50748980
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
ATGCTTTCCCTGGGGAATTTTTGGAGCACCAATACCATTGATCTTTATCTCCACCGCAAGCAGATCTTCCTCACGGGGTGCCATCTTCATCCTGCTGCTGGAGGAGGGTCTCGTTGTCCTCGACTGTTGCCTACAGAATATCTAGTGATATTGTTGGATGAGGATGATGATGGTGATGCAATGCTGCTAGGAGCTCAGTTTTGTTCAGATTCATTCTCTTCAATTTCTCCTGATGCATTTAGCAAAAACGATACACGAGCTTTTCTCTCTCTCGTTTTGAGAGTCAACAGCGCCTCCTCCATTCCACCACCCTCTGTGGTGAATCTCCCTGAGTTTTATCTCAGATCTGAGGCTTTATGTCTCAATTTTATTATCGTTTTCTTTGCTCTAACCCAATTCATCTCCAAATGCCCAGATCTACTTTCATTTCTCTCATCCTCACACAACTCCCCCTTTCATTCTCTATCCCATCTTTTTCTTTTTCCACAATTCTGCCATCACACTTGTGCTCGACCTGGGTTTATATACCTAACTCTACACCTGAGAATAGCTGCCGAACCGTTACTCCACTTATGCTTATGGATGTTGCCGGACCAGTGGCGTTGTGTTGCTCGGTGGTCTCCACCACCACCACGACCTTATGTCTTTGGTACCTTTACCCTTCTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

223

Amino Acids

25.13

Weight (kDa)

6.53

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC24_OB2 PF17245 4 - 99 4.5e-21 Cell division control protein 24, OB domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 650
AccB1I GGYRCC 2 cut(s) 78, 650
AciI CCGC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 16
AdeI CACNNNGTG 1 cut(s) 78
AfaI GTAC 1 cut(s) 652
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 222
AhdI GACNNNNNGTC 1 cut(s) 641
AjnI CCWGG 2 cut(s) 9, 514
AleI CACNNNNGTG 1 cut(s) 504
AloI GAACNNNNNNTCC 2 cut(s) 549, 581
AluBI AGCT 3 cut(s) 194, 260, 551
AluI AGCT 3 cut(s) 194, 260, 551
Alw21I GWGCWC 3 cut(s) 29, 196, 511
Alw26I GTCTC 3 cut(s) 114, 365, 624
ApeKI GCWGC 3 cut(s) 95, 184, 551
ApoI RAATTY 1 cut(s) 16
Asp718I GGTACC 1 cut(s) 650
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 592
AsuHPI GGTGA 2 cut(s) 185, 331
AvaII GGWCC 1 cut(s) 592
BanI GGYRCC 2 cut(s) 78, 650
BanII GRGCYC 1 cut(s) 196
BauI CACGAG 1 cut(s) 255
Bbv12I GWGCWC 3 cut(s) 29, 196, 511
BbvI GCAGC 3 cut(s) 82, 171, 538
BccI CCATC 4 cut(s) 90, 164, 477, 504
BciT130I CCWGG 2 cut(s) 11, 516
BcoDI GTCTC 3 cut(s) 114, 365, 624
BfaI CTAG 2 cut(s) 143, 188
BfmI CTRYAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 294
BglII AGATCT 3 cut(s) 63, 344, 415
BisI GCNGC 3 cut(s) 96, 185, 552
BlsI GCNGC 3 cut(s) 97, 186, 553
Bme1390I CCNGG 2 cut(s) 11, 516
Bme18I GGWCC 1 cut(s) 592
BmeRI GACNNNNNGTC 1 cut(s) 641
BmgT120I GGNCC 1 cut(s) 592
BmiI GGNNCC 2 cut(s) 80, 652
BmrFI CCNGG 2 cut(s) 11, 516
BmsI GCATC 2 cut(s) 166, 223
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BpmI CTGGAG 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 45
BsaI GGTCTC 2 cut(s) 114, 624
BsaJI CCNNGG 3 cut(s) 9, 10, 515
BsaXI ACNNNNNCTCC 4 cut(s) 278, 308, 549, 579
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 595
Bse3DI GCAATG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 2 cut(s) 11, 516
BseDI CCNNGG 3 cut(s) 9, 10, 515
BseGI GGATG 5 cut(s) 88, 163, 169, 434, 588
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 5 cut(s) 209, 321, 339, 355, 533
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 2 cut(s) 117, 286
BseXI GCAGC 3 cut(s) 82, 171, 538
BshNI GGYRCC 2 cut(s) 78, 650
BsiHKAI GWGCWC 3 cut(s) 29, 196, 511
BsiSI CCGG 1 cut(s) 590
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 3 cut(s) 114, 365, 624
Bso31I GGTCTC 2 cut(s) 114, 624
Bsp1286I GDGCHC 3 cut(s) 29, 196, 511
Bsp143I GATC 4 cut(s) 40, 63, 344, 415
BspACI CCGC 1 cut(s) 55
BspCNI CTCAG 5 cut(s) 208, 322, 340, 354, 534
BspLI GGNNCC 2 cut(s) 80, 652
BspT107I GGYRCC 2 cut(s) 78, 650
BspTNI GGTCTC 2 cut(s) 114, 624
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 1 cut(s) 595
BssECI CCNNGG 3 cut(s) 9, 10, 515
BssMI GATC 4 cut(s) 40, 63, 344, 415
BssSI CACGAG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 2 cut(s) 11, 516
Bst4CI ACNGT 2 cut(s) 126, 561
Bst6I CTCTTC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 5 cut(s) 195, 330, 341, 348, 542
BstF5I GGATG 5 cut(s) 88, 163, 169, 434, 588
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 4 cut(s) 43, 66, 347, 418
BstMAI GTCTC 3 cut(s) 114, 365, 624
BstMBI GATC 4 cut(s) 40, 63, 344, 415
BstNI CCWGG 2 cut(s) 11, 516
BstSCI CCNGG 2 cut(s) 9, 514
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 82, 171, 538
BstX2I RGATCY 3 cut(s) 63, 344, 415
BstYI RGATCY 3 cut(s) 63, 344, 415
BtsCI GGATG 5 cut(s) 88, 163, 169, 434, 588
BtsIMutI CAGTG 1 cut(s) 602
Cac8I GCNNGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 592
Csp6I GTAC 1 cut(s) 651
CviJI RGCY 4 cut(s) 194, 260, 353, 551
CviKI_1 RGCY 4 cut(s) 194, 260, 353, 551
CviQI GTAC 1 cut(s) 651
DdeI CTNAG 5 cut(s) 195, 330, 341, 348, 542
DpnI GATC 4 cut(s) 42, 65, 346, 417
DpnII GATC 4 cut(s) 40, 63, 344, 415
DraIII CACNNNGTG 1 cut(s) 78
DriI GACNNNNNGTC 1 cut(s) 641
Eam1104I CTCTTC 1 cut(s) 223
Eam1105I GACNNNNNGTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 223
Ecl136II GAGCTC 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 196
Eco31I GGTCTC 2 cut(s) 114, 624
Eco47I GGWCC 1 cut(s) 592
Eco53kI GAGCTC 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 9, 514
EcoT22I ATGCAT 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 196
FaiI YATR 6 cut(s) 358, 524, 526, 574, 580, 642
FalI AAGNNNNNCTT 2 cut(s) 50, 82
Fnu4HI GCNGC 3 cut(s) 96, 185, 552
FokI GGATG 5 cut(s) 75, 170, 176, 421, 595
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 3 cut(s) 96, 185, 552
FspBI CTAG 2 cut(s) 143, 188
GlaI GCGC 1 cut(s) 292
GluI GCNGC 3 cut(s) 96, 185, 552
GsuI CTGGAG 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 294
HapII CCGG 1 cut(s) 590
HhaI GCGC 1 cut(s) 293
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 3 cut(s) 209, 282, 322
HpaII CCGG 1 cut(s) 590
HphI GGTGA 2 cut(s) 185, 331
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 3 cut(s) 208, 344, 349
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 1 cut(s) 671
HpyCH4III ACNGT 2 cut(s) 126, 561
HpyCH4V TGCA 2 cut(s) 179, 236
HpyF3I CTNAG 5 cut(s) 195, 330, 341, 348, 542
HspAI GCGC 1 cut(s) 291
KpnI GGTACC 1 cut(s) 654
Kzo9I GATC 4 cut(s) 40, 63, 344, 415
LmnI GCTCC 2 cut(s) 24, 191
Lsp1109I GCAGC 3 cut(s) 82, 171, 538
LweI GCATC 2 cut(s) 166, 223
MaeI CTAG 2 cut(s) 143, 188
MaeIII GTNAC 1 cut(s) 561
MalI GATC 4 cut(s) 42, 65, 346, 417
MboI GATC 4 cut(s) 40, 63, 344, 415
MboII GAAGA 3 cut(s) 58, 77, 210
MflI RGATCY 3 cut(s) 63, 344, 415
MhlI GDGCHC 3 cut(s) 29, 196, 511
MluCI AATT 5 cut(s) 16, 222, 364, 395, 488
MlyI GAGTC 1 cut(s) 291
MmeI TCCRAC 1 cut(s) 135
Mph1103I ATGCAT 1 cut(s) 238
MslI CAYNNNNRTG 1 cut(s) 504
MspI CCGG 1 cut(s) 590
MspR9I CCNGG 2 cut(s) 11, 516
MvaI CCWGG 2 cut(s) 11, 516
NdeII GATC 4 cut(s) 40, 63, 344, 415
NlaIV GGNNCC 2 cut(s) 80, 652
NsiI ATGCAT 1 cut(s) 238
OliI CACNNNNGTG 1 cut(s) 504
PasI CCCWGGG 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PfeI GAWTC 2 cut(s) 209, 322
PkrI GCNGC 3 cut(s) 97, 186, 553
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Psp124BI GAGCTC 1 cut(s) 196
Psp6I CCWGG 2 cut(s) 9, 514
PspGI CCWGG 2 cut(s) 9, 514
PspN4I GGNNCC 2 cut(s) 80, 652
PspPI GGNCC 1 cut(s) 592
PsuI RGATCY 3 cut(s) 63, 344, 415
RsaI GTAC 1 cut(s) 652
RsaNI GTAC 1 cut(s) 651
RseI CAYNNNNRTG 1 cut(s) 504
SacI GAGCTC 1 cut(s) 196
SatI GCNGC 3 cut(s) 96, 185, 552
Sau3AI GATC 4 cut(s) 40, 63, 344, 415
Sau96I GGNCC 1 cut(s) 592
SchI GAGTC 1 cut(s) 291
ScrFI CCNGG 2 cut(s) 11, 516
SduI GDGCHC 3 cut(s) 29, 196, 511
SetI ASST 8 cut(s) 196, 262, 517, 531, 543, 553, 640, 656
SfaNI GCATC 2 cut(s) 166, 223
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 592
SmiMI CAYNNNNRTG 1 cut(s) 504
Sse9I AATT 5 cut(s) 16, 222, 364, 395, 488
SsiI CCGC 1 cut(s) 55
SspMI CTAG 2 cut(s) 143, 188
SstI GAGCTC 1 cut(s) 196
StyD4I CCNGG 2 cut(s) 9, 514
TaaI ACNGT 2 cut(s) 126, 561
TaqI TCGA 2 cut(s) 121, 511
TasI AATT 5 cut(s) 16, 222, 364, 395, 488
TfiI GAWTC 2 cut(s) 209, 322
TscAI CASTG 1 cut(s) 602
TseI GCWGC 3 cut(s) 95, 184, 551
TspDTI ATGAA 5 cut(s) 77, 201, 388, 414, 446
TspRI CASTG 1 cut(s) 602
VpaK11BI GGWCC 1 cut(s) 592
XapI RAATTY 1 cut(s) 16
XspI CTAG 2 cut(s) 143, 188
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.