RchiOBHm_Chr5g0027811

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018546
Physical Location & Seq
Reverse (-)
21658143 .. 21658894
752 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30735

Sequence Viewer

Length: 342 bp
ATGTCTCAGTTTCATTATCTTGTTCTTTACCCCAGCCCAATTCCTCTTCAACTGCTCAGATTTACTTCCACTTCTCTCACCCTCATACATCTCCATCTTTCATGTTCTATCCCATCTTTTTCTCTTTTTTCCACAGTCCCCTCACACTCGTTCTCCACCAAGGTATATACACCTAACTCTACACCTGGGAATAGCTGCCGAACCGGTACTCCACTGATGTGTGTGGACGTCACCGGACCAGTGGCGTTGTGTGCTCGGTGGTCTCCACCACCACGACTGCCGTTTCCATGTCCTTTGGTACCTCTGTCCTTCTTTTGCAGACTACTCGGGTATGGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.44

Weight (kDa)

8.9

Isoelectric Point (pI)

52.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
Acc65I GGTACC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 298
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 2 cut(s) 208, 300
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 184
AleI CACNNNNGTG 1 cut(s) 217
AloI GAACNNNNNNTCC 2 cut(s) 193, 225
AluBI AGCT 1 cut(s) 195
AluI AGCT 1 cut(s) 195
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 2 cut(s) 9, 267
Ama87I CYCGRG 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 195
AsiGI ACCGGT 1 cut(s) 203
Asp718I GGTACC 1 cut(s) 298
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 70, 223
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 1 cut(s) 236
BaeI ACNNNNGTAYC 2 cut(s) 290, 323
BanI GGYRCC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 182
BccI CCATC 2 cut(s) 102, 121
BceAI ACGGC 1 cut(s) 265
BcgI CGANNNNNNTGC 2 cut(s) 307, 341
BciT130I CCWGG 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 9, 267
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 159, 185
BsaWI WCCGGW 2 cut(s) 203, 233
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 193, 223
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 159, 185
BseMII CTCAG 2 cut(s) 20, 70
BseNI ACTGG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 182
BseYI CCCAGC 1 cut(s) 32
BshNI GGYRCC 1 cut(s) 298
BshTI ACCGGT 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 2 cut(s) 204, 234
BslFI GGGAC 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 9, 267
BsmFI GGGAC 1 cut(s) 122
Bso31I GGTCTC 1 cut(s) 267
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 256
BspCNI CTCAG 2 cut(s) 19, 69
BspLI GGNNCC 1 cut(s) 300
BspT107I GGYRCC 1 cut(s) 298
BspTNI GGTCTC 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 159, 185
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 6, 56
BstMAI GTCTC 2 cut(s) 9, 267
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 182
BtsIMutI CAGTG 2 cut(s) 212, 246
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 2 cut(s) 207, 299
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 2 cut(s) 102, 288
CviJI RGCY 2 cut(s) 36, 195
CviKI_1 RGCY 2 cut(s) 36, 195
CviQI GTAC 2 cut(s) 207, 299
DdeI CTNAG 2 cut(s) 6, 56
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 2 cut(s) 105, 291
FaiI YATR 6 cut(s) 86, 103, 166, 168, 289, 333
FaqI GGGAC 1 cut(s) 122
FatI CATG 2 cut(s) 101, 287
Fnu4HI GCNGC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 196
GluI GCNGC 1 cut(s) 196
GsaI CCCAGC 1 cut(s) 36
HapII CCGG 2 cut(s) 204, 234
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 2 cut(s) 105, 291
HpaII CCGG 2 cut(s) 204, 234
HphI GGTGA 2 cut(s) 70, 223
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 2 cut(s) 6, 56
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 2 cut(s) 105, 291
KpnI GGTACC 1 cut(s) 302
LpnPI CCDG 6 cut(s) 46, 171, 198, 217, 247, 252
Lsp1109I GCAGC 1 cut(s) 182
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 229
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 1 cut(s) 39
MnlI CCTC 4 cut(s) 54, 92, 151, 312
MslI CAYNNNNRTG 1 cut(s) 217
MspI CCGG 2 cut(s) 204, 234
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 251
NlaIII CATG 2 cut(s) 105, 291
NlaIV GGNNCC 1 cut(s) 300
NmuCI GTSAC 1 cut(s) 229
OliI CACNNNNGTG 1 cut(s) 217
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 32
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 236
RsaI GTAC 2 cut(s) 208, 300
RsaNI GTAC 2 cut(s) 207, 299
RseI CAYNNNNRTG 1 cut(s) 217
SatI GCNGC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 1 cut(s) 256
SetI ASST 6 cut(s) 165, 175, 187, 197, 231, 304
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 217
Sse9I AATT 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 231
TasI AATT 1 cut(s) 39
TscAI CASTG 2 cut(s) 219, 246
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 90
TspRI CASTG 2 cut(s) 219, 246
VpaK11BI GGWCC 1 cut(s) 236
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.