RchiOBHm_Chr3g0449071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018546
Physical Location & Seq
Reverse (-)
1030865 .. 1031933
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41647

Sequence Viewer

Length: 672 bp
ATGTGGTGTGTCTCCGCCCTTCTTTGTGGTGAGTTTTCCCTAAGCTTTGTCTTAGATCTGAGGCTCTTTTTTCTTTGCTCTAGCCCAATTTCTCTCCAAATGCCCAGATTTATTTTCACTTCTCTCATCCTCATACAGCTCCCCTTCTCATCCTCTACCCCATTTTTTTCTTTTTCCACAATTCTACCACCACACTTGTGCTCAACCTGGGCTTATACACCTAATTCTACACCTGGAAATAGCTGCCGAACCGGCACTTCACCGACGTGTGTGGACGTCGCCGGACCAGTGGTGTTGTGTTGCTCGGTGGTCTCCACCACCACGACGGCCGTTTTTATGTCTTTGGGTACCTTTATCCTCTTTGTGCAGACTGTTTGGGTATGGAGAATGATGGTGGACAAATCTTTAGCATCTGGAACTAAAGCTTTGGTCGATGTTACTCTCTCTGCAGCTTGGTGGGCAGCAGCCATGGCGGCGGCTGGTCTATTGGAGGCAGTCCTTTGTGGTTGTAGATCTAGGGTTGTTTTGATTGTTGTTGGGCTTTTGGGCCTCAGTTTATTATTTTCTGTAAGATGTAGGTTAATTAAGCTTTTGTCTATTGGGCTTCTAGGCTTGGACTCTTGCTTGCTTATGCACATCTACATTTGTAGTAAGTTTTCTGGTAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.08

Weight (kDa)

8.45

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
Acc65I GGTACC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 347
AciI CCGC 3 cut(s) 15, 473, 476
AcoI YGGCCR 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 1 cut(s) 349
AflIII ACRYGT 1 cut(s) 266
AjiI CACGTC 1 cut(s) 267
AjnI CCWGG 2 cut(s) 206, 232
AleI CACNNNNGTG 2 cut(s) 196, 265
AluBI AGCT 6 cut(s) 45, 139, 243, 425, 452, 589
AluI AGCT 6 cut(s) 45, 139, 243, 425, 452, 589
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 2 cut(s) 16, 316
AoxI GGCC 2 cut(s) 327, 547
ApeKI GCWGC 4 cut(s) 243, 449, 461, 464
Asp718I GGTACC 1 cut(s) 347
AspS9I GGNCC 2 cut(s) 284, 547
AsuHPI GGTGA 2 cut(s) 41, 252
AvaII GGWCC 1 cut(s) 284
BanI GGYRCC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 4 cut(s) 230, 461, 473, 476
BccI CCATC 1 cut(s) 385
BceAI ACGGC 2 cut(s) 314, 342
BciT130I CCWGG 2 cut(s) 208, 234
BcoDI GTCTC 2 cut(s) 16, 316
BfaI CTAG 3 cut(s) 81, 516, 608
BfmI CTRYAG 1 cut(s) 447
BglI GCCNNNNNGGC 2 cut(s) 252, 473
BglII AGATCT 2 cut(s) 55, 512
BisI GCNGC 6 cut(s) 244, 450, 462, 465, 474, 477
BlsI GCNGC 6 cut(s) 245, 451, 463, 466, 475, 478
Bme1390I CCNGG 2 cut(s) 208, 234
Bme18I GGWCC 1 cut(s) 284
BmgBI CACGTC 1 cut(s) 267
BmgT120I GGNCC 2 cut(s) 284, 547
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 2 cut(s) 208, 234
BmsI GCATC 1 cut(s) 419
Bpu10I CCTNAGC 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 2 cut(s) 207, 468
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 287
BseBI CCWGG 2 cut(s) 208, 234
BseDI CCNNGG 2 cut(s) 207, 468
BseGI GGATG 2 cut(s) 126, 149
BseMII CTCAG 2 cut(s) 50, 565
BseNI ACTGG 1 cut(s) 287
BseX3I CGGCCG 1 cut(s) 327
BseXI GCAGC 4 cut(s) 230, 461, 473, 476
BsgI GTGCAG 1 cut(s) 386
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 2 cut(s) 329, 549
BshNI GGYRCC 1 cut(s) 347
BsiEI CGRYCG 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 203
BsiSI CCGG 2 cut(s) 252, 282
BsmAI GTCTC 2 cut(s) 16, 316
BsnI GGCC 2 cut(s) 329, 549
Bso31I GGTCTC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 2 cut(s) 55, 512
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 3 cut(s) 15, 473, 476
BspANI GGCC 2 cut(s) 329, 549
BspCNI CTCAG 2 cut(s) 51, 564
BspLI GGNNCC 1 cut(s) 349
BspMAI CTGCAG 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 207, 468
BssMI GATC 2 cut(s) 55, 512
BssNI GRCGYC 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 468
Bst2UI CCWGG 2 cut(s) 208, 234
Bst4CI ACNGT 1 cut(s) 373
BstACI GRCGYC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 626
BstDEI CTNAG 4 cut(s) 41, 52, 59, 551
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 2 cut(s) 126, 149
BstKTI GATC 2 cut(s) 58, 515
BstMAI GTCTC 2 cut(s) 16, 316
BstMBI GATC 2 cut(s) 55, 512
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 4 cut(s) 252, 458, 470, 473
BstNI CCWGG 2 cut(s) 208, 234
BstSCI CCNGG 2 cut(s) 206, 232
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 4 cut(s) 230, 461, 473, 476
BstX2I RGATCY 2 cut(s) 55, 512
BstYI RGATCY 2 cut(s) 55, 512
BstZI CGGCCG 1 cut(s) 327
BsuRI GGCC 2 cut(s) 329, 549
BtgI CCRYGG 1 cut(s) 468
BtrI CACGTC 1 cut(s) 267
BtsCI GGATG 2 cut(s) 126, 149
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 626
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 284, 547
Csp6I GTAC 1 cut(s) 348
CspCI CAANNNNNGTGG 2 cut(s) 177, 212
CviAII CATG 1 cut(s) 469
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 4 cut(s) 41, 52, 59, 551
DpnI GATC 2 cut(s) 57, 514
DpnII GATC 2 cut(s) 55, 512
EaeI YGGCCR 1 cut(s) 327
EagI CGGCCG 1 cut(s) 327
EciI GGCGGA 1 cut(s) 4
EclXI CGGCCG 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 468
Eco31I GGTCTC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 284
Eco52I CGGCCG 1 cut(s) 327
EcoRII CCWGG 2 cut(s) 206, 232
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 1 cut(s) 472
FaiI YATR 6 cut(s) 134, 216, 338, 382, 470, 632
FatI CATG 1 cut(s) 468
Fnu4HI GCNGC 6 cut(s) 244, 450, 462, 465, 474, 477
FokI GGATG 2 cut(s) 113, 136
Fsp4HI GCNGC 6 cut(s) 244, 450, 462, 465, 474, 477
FspBI CTAG 3 cut(s) 81, 516, 608
GluI GCNGC 6 cut(s) 244, 450, 462, 465, 474, 477
HaeIII GGCC 2 cut(s) 329, 549
HapII CCGG 2 cut(s) 252, 282
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 1 cut(s) 472
HindIII AAGCTT 3 cut(s) 43, 423, 587
HinfI GANTC 1 cut(s) 617
HpaII CCGG 2 cut(s) 252, 282
HphI GGTGA 2 cut(s) 41, 252
Hpy166II GTNNAC 2 cut(s) 274, 397
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 1 cut(s) 414
Hpy8I GTNNAC 2 cut(s) 274, 397
Hpy99I CGWCG 3 cut(s) 268, 281, 328
HpyAV CCTTC 2 cut(s) 29, 154
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 2 cut(s) 266, 276
HpyCH4V TGCA 3 cut(s) 367, 449, 634
HpyF10VI GCNNNNNNNGC 4 cut(s) 252, 458, 470, 473
HpyF3I CTNAG 4 cut(s) 41, 52, 59, 551
HpySE526I ACGT 2 cut(s) 266, 276
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 1 cut(s) 472
KpnI GGTACC 1 cut(s) 351
Kzo9I GATC 2 cut(s) 55, 512
LmnI GCTCC 1 cut(s) 144
Lsp1109I GCAGC 4 cut(s) 230, 461, 473, 476
LweI GCATC 1 cut(s) 419
MaeI CTAG 3 cut(s) 81, 516, 608
MaeII ACGT 2 cut(s) 266, 276
MaeIII GTNAC 1 cut(s) 436
MalI GATC 2 cut(s) 57, 514
MboI GATC 2 cut(s) 55, 512
MflI RGATCY 2 cut(s) 55, 512
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 4 cut(s) 87, 180, 223, 582
MlyI GAGTC 1 cut(s) 611
MnlI CCTC 6 cut(s) 54, 140, 163, 368, 484, 560
MseI TTAA 2 cut(s) 581, 585
MslI CAYNNNNRTG 2 cut(s) 196, 265
MspI CCGG 2 cut(s) 252, 282
MspR9I CCNGG 2 cut(s) 208, 234
MvaI CCWGG 2 cut(s) 208, 234
MwoI GCNNNNNNNGC 4 cut(s) 252, 458, 470, 473
NcoI CCATGG 1 cut(s) 468
NdeII GATC 2 cut(s) 55, 512
NlaIII CATG 1 cut(s) 472
NlaIV GGNNCC 1 cut(s) 349
OliI CACNNNNGTG 2 cut(s) 196, 265
PacI TTAATTAA 1 cut(s) 585
PkrI GCNGC 6 cut(s) 245, 451, 463, 466, 475, 478
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
Psp6I CCWGG 2 cut(s) 206, 232
PspGI CCWGG 2 cut(s) 206, 232
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 2 cut(s) 284, 547
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 2 cut(s) 55, 512
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
RseI CAYNNNNRTG 2 cut(s) 196, 265
SaqAI TTAA 2 cut(s) 581, 585
SatI GCNGC 6 cut(s) 244, 450, 462, 465, 474, 477
Sau3AI GATC 2 cut(s) 55, 512
Sau96I GGNCC 2 cut(s) 284, 547
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 2 cut(s) 208, 234
SduI GDGCHC 1 cut(s) 203
SfaNI GCATC 1 cut(s) 419
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 2 cut(s) 196, 265
Sse9I AATT 4 cut(s) 87, 180, 223, 582
SsiI CCGC 3 cut(s) 15, 473, 476
SspMI CTAG 3 cut(s) 81, 516, 608
StyD4I CCNGG 2 cut(s) 206, 232
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 2 cut(s) 269, 279
TaqI TCGA 1 cut(s) 432
TasI AATT 4 cut(s) 87, 180, 223, 582
TauI GCSGC 2 cut(s) 476, 479
Tru1I TTAA 2 cut(s) 581, 585
Tru9I TTAA 2 cut(s) 581, 585
TscAI CASTG 1 cut(s) 294
TseI GCWGC 4 cut(s) 243, 449, 461, 464
TspRI CASTG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 284
XspI CTAG 3 cut(s) 81, 516, 608
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.