RchiOBHm_Chr6g0253851

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0018546
Physical Location & Seq
Forward (+)
8991896 .. 8992545
650 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22766

Sequence Viewer

Length: 525 bp
ATGTCTCAGTTTCATTATCTTTTTCTTTACCCCAGCCCAATTCCTCTTCAACTGCTCAGATTTACTTCCACTTCTCTCACCCTCATACAGCTCCATCTTTCATGTTCTATCCCATCTTTTTCTCTTTTTTCCACAGTCCCCTCACACTCGTTCTCCACCAAGGTATATACACCTAACTCTACACTTGGGAATAGCTGCCGAACCGGTACTCCACTGATGTGTGTGGACGTCACCGGACCAGTGGCGTTGTGTTGCTCGGTGGTCTCTACCACCACGACTGCCGTTTTCATGTCCTTTGGTACCTCTGTCCTTCTTATGCAGACTACTCGGGTATGGAGAATGATGGTGAACATACCTCTAGCCTTCAGAAGTGAAGCTTCGGTCGATGCCTCTCTCTGTAGCTTGGTGGTCAGCCATGGCGGCTGGTCTCTCTGTGGCAGTTTTTTGTGGCTTAGATCTAGGGTTGTTTTGGTTCTTGTTGGGCTTTTGGGCCTCGGTTTGTTTCTCTTTTCTGTTTTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.91

Weight (kDa)

9.03

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 299
AciI CCGC 1 cut(s) 420
AcuI CTGAAG 1 cut(s) 349
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 2 cut(s) 208, 301
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 1 cut(s) 50
AleI CACNNNNGTG 1 cut(s) 217
AloI GAACNNNNNNTCC 2 cut(s) 193, 225
AluBI AGCT 4 cut(s) 91, 195, 377, 402
AluI AGCT 4 cut(s) 91, 195, 377, 402
Alw26I GTCTC 3 cut(s) 9, 268, 432
Ama87I CYCGRG 1 cut(s) 327
AoxI GGCC 1 cut(s) 490
ApeKI GCWGC 1 cut(s) 195
AsiGI ACCGGT 1 cut(s) 203
Asp718I GGTACC 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 236, 490
AsuHPI GGTGA 3 cut(s) 70, 223, 358
AvaI CYCGRG 1 cut(s) 327
AvaII GGWCC 1 cut(s) 236
BaeI ACNNNNGTAYC 2 cut(s) 291, 324
BanI GGYRCC 1 cut(s) 299
BbvI GCAGC 1 cut(s) 182
BccI CCATC 3 cut(s) 102, 121, 337
BceAI ACGGC 1 cut(s) 266
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BcoDI GTCTC 3 cut(s) 9, 268, 432
BfaI CTAG 2 cut(s) 359, 459
BfmI CTRYAG 1 cut(s) 397
BglI GCCNNNNNGGC 1 cut(s) 420
BglII AGATCT 1 cut(s) 455
BisI GCNGC 2 cut(s) 196, 421
BlsI GCNGC 2 cut(s) 197, 422
Bme18I GGWCC 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 236, 490
BmiI GGNNCC 1 cut(s) 301
BmsI GCATC 1 cut(s) 376
BsaHI GRCGYC 1 cut(s) 228
BsaI GGTCTC 2 cut(s) 268, 432
BsaJI CCNNGG 3 cut(s) 159, 415, 493
BsaWI WCCGGW 2 cut(s) 203, 233
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 193, 223
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 239
BseDI CCNNGG 3 cut(s) 159, 415, 493
BseMII CTCAG 2 cut(s) 20, 70
BseNI ACTGG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 182
BseYI CCCAGC 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 384
BshFI GGCC 1 cut(s) 492
BshNI GGYRCC 1 cut(s) 299
BshTI ACCGGT 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 384
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 2 cut(s) 204, 234
BslFI GGGAC 1 cut(s) 122
BsmAI GTCTC 3 cut(s) 9, 268, 432
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 492
Bso31I GGTCTC 2 cut(s) 268, 432
BsoBI CYCGRG 1 cut(s) 327
Bsp143I GATC 1 cut(s) 455
Bsp19I CCATGG 1 cut(s) 415
BspACI CCGC 1 cut(s) 420
BspANI GGCC 1 cut(s) 492
BspCNI CTCAG 2 cut(s) 19, 69
BspLI GGNNCC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 299
BspTNI GGTCTC 2 cut(s) 268, 432
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 3 cut(s) 159, 415, 493
BssMI GATC 1 cut(s) 455
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 2 cut(s) 159, 415
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 228
BstDEI CTNAG 3 cut(s) 6, 56, 452
BstDSI CCRYGG 1 cut(s) 415
BstKTI GATC 1 cut(s) 458
BstMAI GTCTC 3 cut(s) 9, 268, 432
BstMBI GATC 1 cut(s) 455
BstMCI CGRYCG 1 cut(s) 384
BstMWI GCNNNNNNNGC 1 cut(s) 420
BstSFI CTRYAG 1 cut(s) 397
BstV1I GCAGC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 455
BstYI RGATCY 1 cut(s) 455
BsuRI GGCC 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 415
BtsIMutI CAGTG 2 cut(s) 212, 246
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 236, 490
Csp6I GTAC 2 cut(s) 207, 300
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 3 cut(s) 102, 289, 416
CviQI GTAC 2 cut(s) 207, 300
DdeI CTNAG 3 cut(s) 6, 56, 452
DpnI GATC 1 cut(s) 457
DpnII GATC 1 cut(s) 455
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 159, 415
Eco31I GGTCTC 2 cut(s) 268, 432
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 349
Eco88I CYCGRG 1 cut(s) 327
EcoT14I CCWWGG 2 cut(s) 159, 415
ErhI CCWWGG 2 cut(s) 159, 415
FaeI CATG 3 cut(s) 105, 292, 419
FaiI YATR 9 cut(s) 86, 103, 166, 168, 290, 317, 334, 353, 417
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FaqI GGGAC 1 cut(s) 122
FatI CATG 3 cut(s) 101, 288, 415
Fnu4HI GCNGC 2 cut(s) 196, 421
Fsp4HI GCNGC 2 cut(s) 196, 421
FspBI CTAG 2 cut(s) 359, 459
GluI GCNGC 2 cut(s) 196, 421
GsaI CCCAGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 492
HapII CCGG 2 cut(s) 204, 234
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 3 cut(s) 105, 292, 419
HindIII AAGCTT 1 cut(s) 375
HpaII CCGG 2 cut(s) 204, 234
HphI GGTGA 3 cut(s) 70, 223, 358
Hpy166II GTNNAC 2 cut(s) 226, 349
Hpy188I TCNGA 2 cut(s) 59, 368
Hpy8I GTNNAC 2 cut(s) 226, 349
HpyAV CCTTC 2 cut(s) 320, 373
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 1 cut(s) 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 420
HpyF3I CTNAG 3 cut(s) 6, 56, 452
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 3 cut(s) 105, 292, 419
KpnI GGTACC 1 cut(s) 303
Kzo9I GATC 1 cut(s) 455
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 5 cut(s) 46, 217, 247, 252, 409
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 359, 459
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 457
MboI GATC 1 cut(s) 455
MboII GAAGA 1 cut(s) 38
MflI RGATCY 1 cut(s) 455
MluCI AATT 1 cut(s) 39
MnlI CCTC 7 cut(s) 54, 92, 151, 313, 366, 400, 503
MslI CAYNNNNRTG 1 cut(s) 217
MspI CCGG 2 cut(s) 204, 234
MwoI GCNNNNNNNGC 1 cut(s) 420
NcoI CCATGG 1 cut(s) 415
NdeII GATC 1 cut(s) 455
NlaIII CATG 3 cut(s) 105, 292, 419
NlaIV GGNNCC 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 229
OliI CACNNNNGTG 1 cut(s) 217
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 2 cut(s) 197, 422
PspFI CCCAGC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 2 cut(s) 236, 490
PsuI RGATCY 1 cut(s) 455
RsaI GTAC 2 cut(s) 208, 301
RsaNI GTAC 2 cut(s) 207, 300
RseI CAYNNNNRTG 1 cut(s) 217
SatI GCNGC 2 cut(s) 196, 421
Sau3AI GATC 1 cut(s) 455
Sau96I GGNCC 2 cut(s) 236, 490
SetI ASST 9 cut(s) 93, 165, 175, 197, 231, 305, 358, 379, 404
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 397
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 217
Sse9I AATT 1 cut(s) 39
SsiI CCGC 1 cut(s) 420
SspMI CTAG 2 cut(s) 359, 459
StyI CCWWGG 2 cut(s) 159, 415
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 384
TaqII GACCGA 1 cut(s) 370
TasI AATT 1 cut(s) 39
TauI GCSGC 1 cut(s) 423
TscAI CASTG 2 cut(s) 219, 246
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 2 cut(s) 90, 277
TspRI CASTG 2 cut(s) 219, 246
VpaK11BI GGWCC 1 cut(s) 236
XspI CTAG 2 cut(s) 359, 459
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.