RchiOBHm_Chr1g0328621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0018546
Physical Location & Seq
Forward (+)
18052350 .. 18053140
791 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55802

Sequence Viewer

Length: 540 bp
ATGCCCAGATCTACTTTCACTTCTCTCATCCTCACACAACTCCCTCTTTCATTCTCTATCCCATCTTCTTCTTTTTCCACAATTCTGCATCACACTTGTGCTCGACCTTGGTTTATATACCGAACTCTACACCTGAGAATAGCTGCTAAACCGATACTCCACCGATGCTTGTGGATGTTGCCAGACCAGTGGCGTTGTGTTGCTCGGTGGTCTCCACCATCACGATGGCGATCTTATGTCTTTTGGTACCTTTATCCTTCTTTTGCAGACTGTTCAGGTATGGACAATGATGGTGGACAACCCTTGGCATCCGGAAGTGAAGTGTTGGCTGATGTTACTCCCTCTGCAACTTGGAGGTTAGCAGCCATGCCGGCTGATCTCTTGGAGGCAGTGCTTTGTGATTCTAGATCTAGGGTTGTTGGGCTTTTGGGCCTCGGTGTGTTATTTTCTGTTGGATGTAGGTTAATTAAGCTTTTGTTTATTGGGCTTCTGGGTCTAGGACCTTTGCTACCTTATGTACATCTACTTCTACATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.06

Weight (kDa)

9.27

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 311
AfaI GTAC 2 cut(s) 248, 519
AleI CACNNNNGTG 1 cut(s) 96
AluBI AGCT 2 cut(s) 143, 472
AluI AGCT 2 cut(s) 143, 472
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 216
Aor13HI TCCGGA 1 cut(s) 311
AoxI GGCC 1 cut(s) 430
ApeKI GCWGC 2 cut(s) 143, 362
Asp718I GGTACC 1 cut(s) 246
AspS9I GGNCC 2 cut(s) 430, 500
AvaII GGWCC 1 cut(s) 500
BanI GGYRCC 1 cut(s) 246
BarI GAAGNNNNNNTAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 103
BbvI GCAGC 2 cut(s) 130, 374
BccI CCATC 4 cut(s) 70, 219, 226, 284
BcoDI GTCTC 1 cut(s) 216
BfaI CTAG 3 cut(s) 405, 411, 497
BglI GCCNNNNNGGC 1 cut(s) 371
BglII AGATCT 2 cut(s) 8, 407
BisI GCNGC 2 cut(s) 144, 363
BlsI GCNGC 2 cut(s) 145, 364
Bme18I GGWCC 1 cut(s) 500
BmgT120I GGNCC 2 cut(s) 430, 500
BmiI GGNNCC 1 cut(s) 248
BmsI GCATC 3 cut(s) 97, 155, 317
BsaBI GATNNNNATC 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 107, 303, 433
BsaWI WCCGGW 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 229
BseAI TCCGGA 1 cut(s) 311
BseDI CCNNGG 3 cut(s) 107, 303, 433
BseGI GGATG 4 cut(s) 27, 180, 308, 461
BseJI GATNNNNATC 1 cut(s) 229
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 2 cut(s) 130, 374
BshFI GGCC 1 cut(s) 432
BshNI GGYRCC 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 103
BsiSI CCGG 2 cut(s) 312, 371
BsmAI GTCTC 1 cut(s) 216
BsnI GGCC 1 cut(s) 432
Bso31I GGTCTC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 103
Bsp13I TCCGGA 1 cut(s) 311
Bsp1407I TGTACA 1 cut(s) 517
Bsp143I GATC 4 cut(s) 8, 230, 376, 407
BspANI GGCC 1 cut(s) 432
BspCNI CTCAG 1 cut(s) 126
BspEI TCCGGA 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 246
BspTNI GGTCTC 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 370
BsrGI TGTACA 1 cut(s) 517
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 3 cut(s) 107, 303, 433
BssMI GATC 4 cut(s) 8, 230, 376, 407
BssT1I CCWWGG 2 cut(s) 107, 303
Bst4CI ACNGT 1 cut(s) 272
BstAUI TGTACA 1 cut(s) 517
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 4 cut(s) 27, 180, 308, 461
BstKTI GATC 4 cut(s) 11, 233, 379, 410
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 4 cut(s) 8, 230, 376, 407
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstV1I GCAGC 2 cut(s) 130, 374
BstX2I RGATCY 2 cut(s) 8, 407
BstXI CCANNNNNNTGG 2 cut(s) 189, 225
BstYI RGATCY 2 cut(s) 8, 407
BsuRI GGCC 1 cut(s) 432
BtsCI GGATG 4 cut(s) 27, 180, 308, 461
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 2 cut(s) 194, 396
Cac8I GCNNGC 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 430, 500
Csp6I GTAC 2 cut(s) 247, 518
CspCI CAANNNNNGTGG 2 cut(s) 274, 309
CviAII CATG 1 cut(s) 367
CviJI RGCY 8 cut(s) 143, 329, 365, 374, 424, 432, 472, 487
CviKI_1 RGCY 8 cut(s) 143, 329, 365, 374, 424, 432, 472, 487
CviQI GTAC 2 cut(s) 247, 518
DdeI CTNAG 1 cut(s) 134
DpnI GATC 4 cut(s) 10, 232, 378, 409
DpnII GATC 4 cut(s) 8, 230, 376, 407
Eco130I CCWWGG 2 cut(s) 107, 303
Eco31I GGTCTC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 500
EcoO109I RGGNCCY 1 cut(s) 500
EcoT14I CCWWGG 2 cut(s) 107, 303
ErhI CCWWGG 2 cut(s) 107, 303
FaeI CATG 1 cut(s) 370
FaiI YATR 6 cut(s) 116, 118, 237, 281, 368, 516
FatI CATG 1 cut(s) 366
Fnu4HI GCNGC 2 cut(s) 144, 363
FokI GGATG 4 cut(s) 14, 187, 295, 468
Fsp4HI GCNGC 2 cut(s) 144, 363
FspBI CTAG 3 cut(s) 405, 411, 497
GluI GCNGC 2 cut(s) 144, 363
HaeIII GGCC 1 cut(s) 432
HapII CCGG 2 cut(s) 312, 371
Hin1II CATG 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 1 cut(s) 401
HpaII CCGG 2 cut(s) 312, 371
Hpy166II GTNNAC 1 cut(s) 296
Hpy188III TCNNGA 3 cut(s) 222, 312, 405
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 3 cut(s) 88, 266, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 1 cut(s) 370
Kpn2I TCCGGA 1 cut(s) 311
KpnI GGTACC 1 cut(s) 250
KroI GCCGGC 1 cut(s) 370
KroNI GCCGGC 1 cut(s) 372
Kzo9I GATC 4 cut(s) 8, 230, 376, 407
LpnPI CCDG 8 cut(s) 19, 146, 195, 200, 261, 325, 384, 476
Lsp1109I GCAGC 2 cut(s) 130, 374
LweI GCATC 3 cut(s) 97, 155, 317
MaeI CTAG 3 cut(s) 405, 411, 497
MaeIII GTNAC 1 cut(s) 334
MalI GATC 4 cut(s) 10, 232, 378, 409
MboI GATC 4 cut(s) 8, 230, 376, 407
MboII GAAGA 2 cut(s) 57, 60
MflI RGATCY 2 cut(s) 8, 407
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 2 cut(s) 81, 465
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 6 cut(s) 41, 54, 348, 352, 379, 443
MroI TCCGGA 1 cut(s) 311
MroNI GCCGGC 1 cut(s) 370
MseI TTAA 2 cut(s) 464, 468
MslI CAYNNNNRTG 2 cut(s) 96, 223
MspI CCGG 2 cut(s) 312, 371
MwoI GCNNNNNNNGC 1 cut(s) 371
NaeI GCCGGC 1 cut(s) 372
NdeII GATC 4 cut(s) 8, 230, 376, 407
NgoMIV GCCGGC 1 cut(s) 370
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 96
PacI TTAATTAA 1 cut(s) 468
PdiI GCCGGC 1 cut(s) 372
PfeI GAWTC 1 cut(s) 401
PkrI GCNGC 2 cut(s) 145, 364
PpuMI RGGWCCY 1 cut(s) 500
Psp5II RGGWCCY 1 cut(s) 500
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 2 cut(s) 430, 500
PspPPI RGGWCCY 1 cut(s) 500
PsuI RGATCY 2 cut(s) 8, 407
RsaI GTAC 2 cut(s) 248, 519
RsaNI GTAC 2 cut(s) 247, 518
RseI CAYNNNNRTG 2 cut(s) 96, 223
SaqAI TTAA 2 cut(s) 464, 468
SatI GCNGC 2 cut(s) 144, 363
Sau3AI GATC 4 cut(s) 8, 230, 376, 407
Sau96I GGNCC 2 cut(s) 430, 500
SduI GDGCHC 1 cut(s) 103
SfaNI GCATC 3 cut(s) 97, 155, 317
SinI GGWCC 1 cut(s) 500
SmiMI CAYNNNNRTG 2 cut(s) 96, 223
Sse9I AATT 2 cut(s) 81, 465
SspMI CTAG 3 cut(s) 405, 411, 497
StyI CCWWGG 2 cut(s) 107, 303
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 1 cut(s) 103
TasI AATT 2 cut(s) 81, 465
TatI WGTACW 1 cut(s) 517
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 2 cut(s) 464, 468
Tru9I TTAA 2 cut(s) 464, 468
TscAI CASTG 2 cut(s) 194, 396
TseI GCWGC 2 cut(s) 143, 362
TspDTI ATGAA 1 cut(s) 39
TspRI CASTG 2 cut(s) 194, 396
VpaK11BI GGWCC 1 cut(s) 500
XbaI TCTAGA 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 222
XspI CTAG 3 cut(s) 405, 411, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.