RchiOBHm_Chr6g0275091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0018546
Physical Location & Seq
Reverse (-)
36727286 .. 36727842
557 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24678

Sequence Viewer

Length: 327 bp
ATGCCCAGATTTATTTTCACTTTTCTCATCCTCATACAGCTCCCTTTCTCATCCTCTACCCCATTTTTTTCTTTTTCCACAATTCTACCACCACACTTGTGCTCGACCTGGGTTTATACACCTAACTCTACACCTGGAAATAGCTGCCGAACCGGCACTCCACTGACGTGTGTGGACGTCGCCAGACCAATGGCGTTGTGTTGCTTGGTGGTCTCCACCACCATGACAGCCGTTTTTATGTCTTTGGGTACCTTTATCCTCTTTGGGCAGACTGTTTGGATATGGAGAATGATATATGGTGGACAAATCTTTAGCATCCGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.1

Weight (kDa)

9.1

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
Acc65I GGTACC 1 cut(s) 248
AccB1I GGYRCC 1 cut(s) 248
AccIII TCCGGA 1 cut(s) 318
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 1 cut(s) 250
AflIII ACRYGT 1 cut(s) 167
AjiI CACGTC 1 cut(s) 168
AjnI CCWGG 2 cut(s) 107, 133
AleI CACNNNNGTG 2 cut(s) 97, 166
AloI GAACNNNNNNTCC 2 cut(s) 142, 174
AluBI AGCT 2 cut(s) 40, 144
AluI AGCT 2 cut(s) 40, 144
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 217
Aor13HI TCCGGA 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 144
Asp718I GGTACC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 2 cut(s) 109, 135
BcoDI GTCTC 1 cut(s) 217
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 2 cut(s) 109, 135
BmgBI CACGTC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 2 cut(s) 109, 135
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bse118I RCCGGY 1 cut(s) 152
BseAI TCCGGA 1 cut(s) 318
BseBI CCWGG 2 cut(s) 109, 135
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 3 cut(s) 27, 50, 315
BseXI GCAGC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 2 cut(s) 153, 319
BsmAI GTCTC 1 cut(s) 217
Bso31I GGTCTC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 104
Bsp13I TCCGGA 1 cut(s) 318
BspEI TCCGGA 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 217
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 108
BssNI GRCGYC 1 cut(s) 177
Bst2UI CCWGG 2 cut(s) 109, 135
Bst4CI ACNGT 1 cut(s) 274
BstACI GRCGYC 1 cut(s) 177
BstF5I GGATG 3 cut(s) 27, 50, 315
BstMAI GTCTC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 2 cut(s) 109, 135
BstSCI CCNGG 2 cut(s) 107, 133
BstV1I GCAGC 1 cut(s) 131
BstXI CCANNNNNNTGG 1 cut(s) 190
BtrI CACGTC 1 cut(s) 168
BtsCI GGATG 3 cut(s) 27, 50, 315
BtsIMutI CAGTG 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 152
Csp6I GTAC 1 cut(s) 249
CspCI CAANNNNNGTGG 2 cut(s) 78, 113
CviAII CATG 1 cut(s) 223
CviJI RGCY 3 cut(s) 40, 144, 230
CviKI_1 RGCY 3 cut(s) 40, 144, 230
CviQI GTAC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 217
EcoRII CCWGG 2 cut(s) 107, 133
FaeI CATG 1 cut(s) 226
FaiI YATR 7 cut(s) 35, 117, 224, 239, 283, 295, 297
FatI CATG 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 3 cut(s) 14, 37, 302
Fsp4HI GCNGC 1 cut(s) 145
GluI GCNGC 1 cut(s) 145
HapII CCGG 2 cut(s) 153, 319
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 1 cut(s) 226
HpaII CCGG 2 cut(s) 153, 319
Hpy166II GTNNAC 2 cut(s) 175, 302
Hpy188III TCNNGA 1 cut(s) 319
Hpy8I GTNNAC 2 cut(s) 175, 302
Hpy99I CGWCG 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 2 cut(s) 167, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpySE526I ACGT 2 cut(s) 167, 177
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 1 cut(s) 226
Kpn2I TCCGGA 1 cut(s) 318
KpnI GGTACC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 7 cut(s) 19, 94, 120, 121, 147, 166, 196
Lsp1109I GCAGC 1 cut(s) 131
MaeII ACGT 2 cut(s) 167, 177
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 81
MnlI CCTC 3 cut(s) 41, 64, 269
MroI TCCGGA 1 cut(s) 318
MslI CAYNNNNRTG 3 cut(s) 97, 166, 221
MspI CCGG 2 cut(s) 153, 319
MspR9I CCNGG 2 cut(s) 109, 135
MvaI CCWGG 2 cut(s) 109, 135
MwoI GCNNNNNNNGC 1 cut(s) 153
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 250
OliI CACNNNNGTG 2 cut(s) 97, 166
PkrI GCNGC 1 cut(s) 146
Psp6I CCWGG 2 cut(s) 107, 133
PspGI CCWGG 2 cut(s) 107, 133
PspN4I GGNNCC 1 cut(s) 250
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 3 cut(s) 97, 166, 221
SatI GCNGC 1 cut(s) 145
ScrFI CCNGG 2 cut(s) 109, 135
SduI GDGCHC 1 cut(s) 104
SetI ASST 8 cut(s) 42, 110, 124, 136, 146, 170, 180, 254
SmiMI CAYNNNNRTG 3 cut(s) 97, 166, 221
Sse9I AATT 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 107, 133
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 2 cut(s) 170, 180
TaqI TCGA 1 cut(s) 104
TasI AATT 1 cut(s) 81
TscAI CASTG 1 cut(s) 168
TseI GCWGC 1 cut(s) 144
TspRI CASTG 1 cut(s) 168
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.