Rroxscaffold_2G00102500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018546
Physical Location & Seq
Reverse (-)
24641687 .. 24643262
1576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102500.1

Sequence Viewer

Length: 600 bp
ATGTCTCAGTTTCATTATCTTTTTCTTTACCCCAGCCCAATTCCTCTTCAACTGCCCAGATTTACTTCCCCTTCTCTCATCCTCACACAGCTCCATCTCTCATGTTCTATCCCATCTTTTTCTCTTTTTTCCACAGTCCCATCACACTCGTTCTCCACCAAGGTATATACACCTAACTCTGCACCTGGGAATAGCTGCCGAACCGGTACTCCACCGATGTGTGTGGACGTCACCGGACCAGTGGCGTTGTGTTGCTCGGTGGTCTCCACCACCACGACTGCCATTTCCATGTCCTTTGGTACCTCTGTCCTTCTTATGCAGACTGCTTGGGTATGGAGAATGATGGTGAACATACCTCTGGCCTTCGGAAGTAAAGCTTTGGTCGATGCCTCTCTCTATGCAGCTTGGTGGTCAGCCATGGCGGCTGGTCTCTCTGTGACAGTTTTTTTGTGGCTTAGATTTAGGGTTGTTTTGGTTGTTGTTGGGCTTTTGGGCCTCGGTTTGTTTCTCTTTTCTGTTTGGTGTAGGTTAATTAAGCTTTTGTCTATTGGGCCTCCAAGCTTAGGACTTTTGCTTCTTTATGCACATCAACATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.67

Weight (kDa)

9.42

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 299
AciI CCGC 1 cut(s) 422
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 2 cut(s) 208, 301
AfiI CCNNNNNNNGG 1 cut(s) 563
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 184
AleI CACNNNNGTG 1 cut(s) 217
AloI GAACNNNNNNTCC 2 cut(s) 193, 225
AluBI AGCT 6 cut(s) 91, 195, 377, 404, 538, 561
AluI AGCT 6 cut(s) 91, 195, 377, 404, 538, 561
Alw26I GTCTC 3 cut(s) 9, 268, 434
AoxI GGCC 3 cut(s) 360, 493, 551
ApeKI GCWGC 2 cut(s) 195, 401
ArsI GACNNNNNNTTYG 2 cut(s) 430, 462
AsiGI ACCGGT 1 cut(s) 203
Asp718I GGTACC 1 cut(s) 299
AspS9I GGNCC 3 cut(s) 236, 493, 551
AsuHPI GGTGA 2 cut(s) 223, 358
AvaII GGWCC 1 cut(s) 236
BaeI ACNNNNGTAYC 2 cut(s) 291, 324
BanI GGYRCC 1 cut(s) 299
BbvI GCAGC 2 cut(s) 182, 413
BccI CCATC 4 cut(s) 102, 121, 148, 337
BciT130I CCWGG 1 cut(s) 186
BcoDI GTCTC 3 cut(s) 9, 268, 434
BglI GCCNNNNNGGC 1 cut(s) 422
BisI GCNGC 3 cut(s) 196, 402, 423
BlsI GCNGC 3 cut(s) 197, 403, 424
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 3 cut(s) 236, 493, 551
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 376
Bpu10I CCTNAGC 1 cut(s) 562
BsaHI GRCGYC 1 cut(s) 228
BsaI GGTCTC 2 cut(s) 268, 434
BsaJI CCNNGG 4 cut(s) 159, 185, 417, 496
BsaWI WCCGGW 2 cut(s) 203, 233
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 193, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 563
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 4 cut(s) 159, 185, 417, 496
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 563
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 182, 413
BseYI CCCAGC 1 cut(s) 32
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 3 cut(s) 362, 495, 553
BshNI GGYRCC 1 cut(s) 299
BshTI ACCGGT 1 cut(s) 203
BsiSI CCGG 2 cut(s) 204, 234
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 563
BsmAI GTCTC 3 cut(s) 9, 268, 434
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 3 cut(s) 362, 495, 553
Bso31I GGTCTC 2 cut(s) 268, 434
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 1 cut(s) 422
BspANI GGCC 3 cut(s) 362, 495, 553
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 299
BspTNI GGTCTC 2 cut(s) 268, 434
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 4 cut(s) 159, 185, 417, 496
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 2 cut(s) 159, 417
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 136, 442
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 228
BstDEI CTNAG 3 cut(s) 6, 455, 562
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 1 cut(s) 78
BstMAI GTCTC 3 cut(s) 9, 268, 434
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 182, 413
BsuRI GGCC 3 cut(s) 362, 495, 553
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 246
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 3 cut(s) 236, 493, 551
Csp6I GTAC 2 cut(s) 207, 300
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 3 cut(s) 102, 289, 418
CviQI GTAC 2 cut(s) 207, 300
DdeI CTNAG 3 cut(s) 6, 455, 562
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 159, 417
Eco31I GGTCTC 2 cut(s) 268, 434
Eco47I GGWCC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 2 cut(s) 159, 417
ErhI CCWWGG 2 cut(s) 159, 417
FaeI CATG 3 cut(s) 105, 292, 421
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FaqI GGGAC 1 cut(s) 122
FatI CATG 3 cut(s) 101, 288, 417
Fnu4HI GCNGC 3 cut(s) 196, 402, 423
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 3 cut(s) 196, 402, 423
GluI GCNGC 3 cut(s) 196, 402, 423
GsaI CCCAGC 1 cut(s) 36
HaeIII GGCC 3 cut(s) 362, 495, 553
HapII CCGG 2 cut(s) 204, 234
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 3 cut(s) 105, 292, 421
HindIII AAGCTT 3 cut(s) 375, 536, 559
HpaII CCGG 2 cut(s) 204, 234
HphI GGTGA 2 cut(s) 223, 358
Hpy166II GTNNAC 2 cut(s) 226, 349
Hpy188I TCNGA 1 cut(s) 368
Hpy8I GTNNAC 2 cut(s) 226, 349
HpyAV CCTTC 3 cut(s) 81, 320, 373
HpyCH4III ACNGT 2 cut(s) 136, 442
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 4 cut(s) 182, 319, 401, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 3 cut(s) 6, 455, 562
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 3 cut(s) 105, 292, 421
KpnI GGTACC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 9 cut(s) 46, 70, 171, 198, 217, 247, 252, 344, 411
Lsp1109I GCAGC 2 cut(s) 182, 413
LweI GCATC 1 cut(s) 376
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 2 cut(s) 229, 436
MboII GAAGA 1 cut(s) 38
MluCI AATT 2 cut(s) 39, 531
MnlI CCTC 7 cut(s) 54, 92, 313, 366, 400, 506, 564
MseI TTAA 2 cut(s) 530, 534
MslI CAYNNNNRTG 2 cut(s) 217, 287
MspI CCGG 2 cut(s) 204, 234
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 422
NcoI CCATGG 1 cut(s) 417
NlaIII CATG 3 cut(s) 105, 292, 421
NlaIV GGNNCC 1 cut(s) 301
NmuCI GTSAC 2 cut(s) 229, 436
OliI CACNNNNGTG 1 cut(s) 217
PacI TTAATTAA 1 cut(s) 534
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 3 cut(s) 197, 403, 424
Psp6I CCWGG 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 32
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 3 cut(s) 236, 493, 551
RsaI GTAC 2 cut(s) 208, 301
RsaNI GTAC 2 cut(s) 207, 300
RseI CAYNNNNRTG 2 cut(s) 217, 287
SaqAI TTAA 2 cut(s) 530, 534
SatI GCNGC 3 cut(s) 196, 402, 423
Sau96I GGNCC 3 cut(s) 236, 493, 551
ScrFI CCNGG 1 cut(s) 186
SfaNI GCATC 1 cut(s) 376
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 217, 287
Sse9I AATT 2 cut(s) 39, 531
SsiI CCGC 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 2 cut(s) 159, 417
TaaI ACNGT 2 cut(s) 136, 442
TaiI ACGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 384
TasI AATT 2 cut(s) 39, 531
TauI GCSGC 1 cut(s) 425
Tru1I TTAA 2 cut(s) 530, 534
Tru9I TTAA 2 cut(s) 530, 534
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 2 cut(s) 229, 436
TseI GCWGC 2 cut(s) 195, 401
Tsp45I GTSAC 2 cut(s) 229, 436
TspRI CASTG 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 236
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.