RchiOBHm_Chr2g0147461

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018546
Physical Location & Seq
Forward (+)
65069301 .. 65069924
624 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51708

Sequence Viewer

Length: 531 bp
ATGTCTCAGTTTCATTATAGTTTTCTTTGTTCCAGCCCAATTCTTCTTCAATTACCCAGATTTACTTCCACTTCTCTCACCCTCTTACAGATCCACCTCCCATGTTCTATCCCATCTTTTTCTCTTTTTTCCACAATCCCCTCACACTTGGTCTCGACCTGGGTATCTACACCTAACTCTACACCTATGAATAGCTGCCGAACCGGTACTCCACCGATGTTTGTGGACGACACCGGACCAGTGGCGTTGTGTTGCTCGGTGGTCTCCACCACTACGACTGCCTTTCTCATGTCCTTTGGTACCTCTTTCCTTCTTTTGCAGACTATTCAGGTACGGAGAATGATGGTGGACAAACCTCTGGCCTCTGGAAGTGAAGCTTTGGTCGATGCCTCTCTCTTTGCAGCTCGGCGGTCAGCAGCCATGGCGGCTGGTTTCTCTGCAGCAGCTCTATGTGGTTTTAGATCTAGGGTTGGTTTTGGTTGTTGTTGGGCTTTTGGGCCTCGGTTTGTTTTTCTTTTTTGTCTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.01

Weight (kDa)

8.88

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 299
AciI CCGC 2 cut(s) 409, 425
AclWI GGATC 1 cut(s) 85
AfaI GTAC 3 cut(s) 208, 301, 333
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 158
AloI GAACNNNNNNTCC 2 cut(s) 193, 225
AluBI AGCT 4 cut(s) 195, 377, 404, 446
AluI AGCT 4 cut(s) 195, 377, 404, 446
Alw26I GTCTC 3 cut(s) 9, 157, 268
AlwI GGATC 1 cut(s) 85
AoxI GGCC 2 cut(s) 360, 497
ApeKI GCWGC 5 cut(s) 195, 401, 416, 440, 443
AsiGI ACCGGT 1 cut(s) 203
Asp718I GGTACC 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 236, 497
AsuHPI GGTGA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 236
BaeI ACNNNNGTAYC 2 cut(s) 147, 180
BanI GGYRCC 1 cut(s) 299
BbvI GCAGC 5 cut(s) 182, 413, 428, 452, 455
BccI CCATC 2 cut(s) 121, 337
BciT130I CCWGG 1 cut(s) 160
BcoDI GTCTC 3 cut(s) 9, 157, 268
BfaI CTAG 1 cut(s) 465
BfmI CTRYAG 1 cut(s) 438
BglI GCCNNNNNGGC 1 cut(s) 425
BglII AGATCT 1 cut(s) 461
BisI GCNGC 6 cut(s) 196, 402, 417, 426, 441, 444
BlsI GCNGC 6 cut(s) 197, 403, 418, 427, 442, 445
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 236, 497
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 376
BsaI GGTCTC 2 cut(s) 157, 268
BsaJI CCNNGG 3 cut(s) 159, 420, 500
BsaWI WCCGGW 2 cut(s) 203, 233
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 3 cut(s) 159, 420, 500
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 239
BseXI GCAGC 5 cut(s) 182, 413, 428, 452, 455
BshFI GGCC 2 cut(s) 362, 499
BshNI GGYRCC 1 cut(s) 299
BshTI ACCGGT 1 cut(s) 203
BsiSI CCGG 2 cut(s) 204, 234
BsmAI GTCTC 3 cut(s) 9, 157, 268
BsnI GGCC 2 cut(s) 362, 499
Bso31I GGTCTC 2 cut(s) 157, 268
Bsp143I GATC 2 cut(s) 90, 461
Bsp19I CCATGG 1 cut(s) 420
BspACI CCGC 2 cut(s) 409, 425
BspANI GGCC 2 cut(s) 362, 499
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 301
BspMAI CTGCAG 1 cut(s) 442
BspPI GGATC 1 cut(s) 85
BspT107I GGYRCC 1 cut(s) 299
BspTNI GGTCTC 2 cut(s) 157, 268
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 3 cut(s) 159, 420, 500
BssMI GATC 2 cut(s) 90, 461
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 420
BstKTI GATC 2 cut(s) 93, 464
BstMAI GTCTC 3 cut(s) 9, 157, 268
BstMBI GATC 2 cut(s) 90, 461
BstMWI GCNNNNNNNGC 2 cut(s) 422, 425
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 438
BstV1I GCAGC 5 cut(s) 182, 413, 428, 452, 455
BstX2I RGATCY 2 cut(s) 90, 461
BstYI RGATCY 2 cut(s) 90, 461
BsuRI GGCC 2 cut(s) 362, 499
BtgI CCRYGG 1 cut(s) 420
BtsIMutI CAGTG 1 cut(s) 246
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 236, 497
Csp6I GTAC 3 cut(s) 207, 300, 332
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 3 cut(s) 102, 289, 421
CviQI GTAC 3 cut(s) 207, 300, 332
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 92, 463
DpnII GATC 2 cut(s) 90, 461
Eco130I CCWWGG 1 cut(s) 420
Eco31I GGTCTC 2 cut(s) 157, 268
Eco47I GGWCC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 3 cut(s) 105, 292, 424
FaiI YATR 6 cut(s) 18, 103, 188, 290, 422, 451
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FatI CATG 3 cut(s) 101, 288, 420
Fnu4HI GCNGC 6 cut(s) 196, 402, 417, 426, 441, 444
Fsp4HI GCNGC 6 cut(s) 196, 402, 417, 426, 441, 444
FspBI CTAG 1 cut(s) 465
GluI GCNGC 6 cut(s) 196, 402, 417, 426, 441, 444
HaeIII GGCC 2 cut(s) 362, 499
HapII CCGG 2 cut(s) 204, 234
Hin1II CATG 3 cut(s) 105, 292, 424
HindIII AAGCTT 1 cut(s) 375
HpaII CCGG 2 cut(s) 204, 234
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 226, 349
Hpy188I TCNGA 1 cut(s) 525
Hpy188III TCNNGA 2 cut(s) 154, 366
Hpy8I GTNNAC 2 cut(s) 226, 349
HpyAV CCTTC 1 cut(s) 320
HpyCH4V TGCA 3 cut(s) 319, 401, 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 425
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 3 cut(s) 105, 292, 424
KpnI GGTACC 1 cut(s) 303
Kzo9I GATC 2 cut(s) 90, 461
Lsp1109I GCAGC 5 cut(s) 182, 413, 428, 452, 455
LweI GCATC 1 cut(s) 376
MaeI CTAG 1 cut(s) 465
MalI GATC 2 cut(s) 92, 463
MboI GATC 2 cut(s) 90, 461
MboII GAAGA 2 cut(s) 35, 38
MflI RGATCY 2 cut(s) 90, 461
MluCI AATT 2 cut(s) 39, 50
MnlI CCTC 8 cut(s) 92, 107, 151, 313, 366, 373, 400, 510
MspI CCGG 2 cut(s) 204, 234
MspR9I CCNGG 1 cut(s) 160
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 422, 425
NcoI CCATGG 1 cut(s) 420
NdeII GATC 2 cut(s) 90, 461
NlaIII CATG 3 cut(s) 105, 292, 424
NlaIV GGNNCC 1 cut(s) 301
NmeAIII GCCGAG 1 cut(s) 385
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 6 cut(s) 197, 403, 418, 427, 442, 445
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 2 cut(s) 236, 497
PstI CTGCAG 1 cut(s) 442
PsuI RGATCY 2 cut(s) 90, 461
RsaI GTAC 3 cut(s) 208, 301, 333
RsaNI GTAC 3 cut(s) 207, 300, 332
SatI GCNGC 6 cut(s) 196, 402, 417, 426, 441, 444
Sau3AI GATC 2 cut(s) 90, 461
Sau96I GGNCC 2 cut(s) 236, 497
ScrFI CCNGG 1 cut(s) 160
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 1 cut(s) 236
Sse9I AATT 2 cut(s) 39, 50
SsiI CCGC 2 cut(s) 409, 425
SspMI CTAG 1 cut(s) 465
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 1 cut(s) 420
TaqI TCGA 2 cut(s) 155, 384
TasI AATT 2 cut(s) 39, 50
TauI GCSGC 1 cut(s) 428
TscAI CASTG 1 cut(s) 246
TseI GCWGC 5 cut(s) 195, 401, 416, 440, 443
TspDTI ATGAA 1 cut(s) 203
TspGWI ACGGA 1 cut(s) 349
TspRI CASTG 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 236
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.