RchiOBHm_Chr7g0225591

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018546
Physical Location & Seq
Forward (+)
48432087 .. 48432913
827 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20205

Sequence Viewer

Length: 528 bp
ATGTCTCAATTTTATTATCTTTTTCTTTGCTCTAACCCAATTCATCTCCAAATGTCCAGCTCTACTTTCACTTCTCTCATCCTCACACAACTCCCCCTTTCATTCTCTATCCCATCTTCTTCTTTTTCCACAATTATGACATCACACTTGTGCTCGACCTGGGTTTATATACCTAACTCTACACCTGAGAATAGCTGCCGAACCGATACTCTACCGTTGCTTGTGGATGTTGCCGGACCAATGGCGTTGTGTTGCTCGATGGTCTCCACCACCACGACGGCCGATCTTATGTCTTTTGGTACCTTTATCCTTCTTTTGCAGACTGTTCGGGTATGGAGAATGATAGTGGACAAACCCTTGGCATTCGGAAGTGAAGCGTTGGCTAATGTTACTCCCTCTGCAACTTGGAGGGCAGCAGCCATGGCGGCTGGTCTCCTGGAGGTAGTGCTTTGTGATTCTAGATCTAGGGTTTTTTTTTTTTGGGGCTTTTGGGCCTCGGTGTGTTATTTTCTGTTGGATGTAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.31

Weight (kDa)

5.46

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 299
AciI CCGC 1 cut(s) 425
AcoI YGGCCR 1 cut(s) 279
AfaI GTAC 1 cut(s) 301
AjnI CCWGG 2 cut(s) 158, 435
AleI CACNNNNGTG 1 cut(s) 148
AluBI AGCT 2 cut(s) 60, 195
AluI AGCT 2 cut(s) 60, 195
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 3 cut(s) 9, 268, 437
AoxI GGCC 2 cut(s) 279, 492
ApeKI GCWGC 3 cut(s) 195, 413, 416
Asp718I GGTACC 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 236, 492
AvaII GGWCC 1 cut(s) 236
BanI GGYRCC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 3 cut(s) 182, 425, 428
BccI CCATC 2 cut(s) 121, 253
BceAI ACGGC 1 cut(s) 294
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 2 cut(s) 160, 437
BcoDI GTCTC 3 cut(s) 9, 268, 437
BfaI CTAG 2 cut(s) 459, 465
BglI GCCNNNNNGGC 1 cut(s) 425
BglII AGATCT 1 cut(s) 461
BisI GCNGC 4 cut(s) 196, 414, 417, 426
BlsI GCNGC 4 cut(s) 197, 415, 418, 427
Bme1390I CCNGG 2 cut(s) 160, 437
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 236, 492
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 2 cut(s) 160, 437
BpmI CTGGAG 1 cut(s) 458
BsaI GGTCTC 2 cut(s) 268, 437
BsaJI CCNNGG 4 cut(s) 159, 357, 420, 495
BseBI CCWGG 2 cut(s) 160, 437
BseDI CCNNGG 4 cut(s) 159, 357, 420, 495
BseGI GGATG 3 cut(s) 78, 232, 523
BseMII CTCAG 1 cut(s) 177
BseX3I CGGCCG 1 cut(s) 279
BseXI GCAGC 3 cut(s) 182, 425, 428
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 2 cut(s) 281, 494
BshNI GGYRCC 1 cut(s) 299
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 234
BsmAI GTCTC 3 cut(s) 9, 268, 437
BsmI GAATGC 1 cut(s) 362
BsnI GGCC 2 cut(s) 281, 494
Bso31I GGTCTC 2 cut(s) 268, 437
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 283, 461
Bsp19I CCATGG 1 cut(s) 420
BspACI CCGC 1 cut(s) 425
BspANI GGCC 2 cut(s) 281, 494
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 299
BspTNI GGTCTC 2 cut(s) 268, 437
BssECI CCNNGG 4 cut(s) 159, 357, 420, 495
BssMI GATC 2 cut(s) 283, 461
BssT1I CCWWGG 2 cut(s) 357, 420
Bst2UI CCWGG 2 cut(s) 160, 437
Bst4CI ACNGT 2 cut(s) 216, 325
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 3 cut(s) 78, 232, 523
BstKTI GATC 2 cut(s) 286, 464
BstMAI GTCTC 3 cut(s) 9, 268, 437
BstMBI GATC 2 cut(s) 283, 461
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 2 cut(s) 422, 425
BstNI CCWGG 2 cut(s) 160, 437
BstSCI CCNGG 2 cut(s) 158, 435
BstV1I GCAGC 3 cut(s) 182, 425, 428
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BstZI CGGCCG 1 cut(s) 279
BsuRI GGCC 2 cut(s) 281, 494
BtgI CCRYGG 1 cut(s) 420
BtsCI GGATG 3 cut(s) 78, 232, 523
Cfr13I GGNCC 2 cut(s) 236, 492
Csp6I GTAC 1 cut(s) 300
CviAII CATG 1 cut(s) 421
CviJI RGCY 8 cut(s) 60, 195, 281, 383, 419, 428, 486, 494
CviKI_1 RGCY 8 cut(s) 60, 195, 281, 383, 419, 428, 486, 494
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 285, 463
DpnII GATC 2 cut(s) 283, 461
EaeI YGGCCR 1 cut(s) 279
EagI CGGCCG 1 cut(s) 279
EclXI CGGCCG 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 357, 420
Eco31I GGTCTC 2 cut(s) 268, 437
Eco47I GGWCC 1 cut(s) 236
Eco52I CGGCCG 1 cut(s) 279
EcoRII CCWGG 2 cut(s) 158, 435
EcoT14I CCWWGG 2 cut(s) 357, 420
ErhI CCWWGG 2 cut(s) 357, 420
FaeI CATG 1 cut(s) 424
FaiI YATR 6 cut(s) 137, 168, 170, 290, 334, 422
FatI CATG 1 cut(s) 420
Fnu4HI GCNGC 4 cut(s) 196, 414, 417, 426
FokI GGATG 2 cut(s) 65, 239
Fsp4HI GCNGC 4 cut(s) 196, 414, 417, 426
FspBI CTAG 2 cut(s) 459, 465
GluI GCNGC 4 cut(s) 196, 414, 417, 426
GsuI CTGGAG 1 cut(s) 458
HaeIII GGCC 2 cut(s) 281, 494
HapII CCGG 1 cut(s) 234
Hin1II CATG 1 cut(s) 424
HinfI GANTC 1 cut(s) 455
HpaII CCGG 1 cut(s) 234
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 1 cut(s) 368
Hpy188III TCNNGA 1 cut(s) 459
Hpy8I GTNNAC 1 cut(s) 349
Hpy99I CGWCG 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 2 cut(s) 216, 325
HpyCH4V TGCA 2 cut(s) 319, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 425
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 1 cut(s) 424
KpnI GGTACC 1 cut(s) 303
Kzo9I GATC 2 cut(s) 283, 461
LpnPI CCDG 8 cut(s) 70, 145, 172, 198, 247, 414, 422, 449
Lsp1109I GCAGC 3 cut(s) 182, 425, 428
MaeI CTAG 2 cut(s) 459, 465
MaeIII GTNAC 1 cut(s) 388
MalI GATC 2 cut(s) 285, 463
MboI GATC 2 cut(s) 283, 461
MboII GAAGA 2 cut(s) 108, 111
MflI RGATCY 1 cut(s) 461
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 3 cut(s) 8, 39, 132
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 5 cut(s) 92, 402, 406, 433, 505
MseI TTAA 1 cut(s) 526
MslI CAYNNNNRTG 2 cut(s) 134, 148
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 160, 437
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 2 cut(s) 160, 437
MwoI GCNNNNNNNGC 2 cut(s) 422, 425
NcoI CCATGG 1 cut(s) 420
NdeII GATC 2 cut(s) 283, 461
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 1 cut(s) 301
OliI CACNNNNGTG 1 cut(s) 148
PctI GAATGC 1 cut(s) 362
PfeI GAWTC 1 cut(s) 455
PfoI TCCNGGA 1 cut(s) 435
PkrI GCNGC 4 cut(s) 197, 415, 418, 427
Psp6I CCWGG 2 cut(s) 158, 435
PspGI CCWGG 2 cut(s) 158, 435
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 2 cut(s) 236, 492
PsuI RGATCY 1 cut(s) 461
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 2 cut(s) 134, 148
SaqAI TTAA 1 cut(s) 526
SatI GCNGC 4 cut(s) 196, 414, 417, 426
Sau3AI GATC 2 cut(s) 283, 461
Sau96I GGNCC 2 cut(s) 236, 492
ScrFI CCNGG 2 cut(s) 160, 437
SduI GDGCHC 1 cut(s) 155
SetI ASST 8 cut(s) 62, 161, 175, 187, 197, 305, 444, 526
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 134, 148
Sse9I AATT 3 cut(s) 8, 39, 132
SsiI CCGC 1 cut(s) 425
SspMI CTAG 2 cut(s) 459, 465
StyD4I CCNGG 2 cut(s) 158, 435
StyI CCWWGG 2 cut(s) 357, 420
TaaI ACNGT 2 cut(s) 216, 325
TaqI TCGA 2 cut(s) 155, 257
TasI AATT 3 cut(s) 8, 39, 132
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 1 cut(s) 526
Tru9I TTAA 1 cut(s) 526
TseI GCWGC 3 cut(s) 195, 413, 416
TspDTI ATGAA 2 cut(s) 32, 90
VpaK11BI GGWCC 1 cut(s) 236
XbaI TCTAGA 1 cut(s) 458
XspI CTAG 2 cut(s) 459, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.