Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017373

Physical Location & Seq

Genomic Coordinates Forward (+)

66147477 .. 66147959

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGTTTGCAAGGAAACTCCGCGGATTCGCGAAACAAATCACTTGTTTCTGGGGCTCCCTTTGCTCAAGGATAGCCAGAATGCGGTTCAAATCACAAATGCCTGGCTCAAAGAGGGGCTTAAACAACGTTGCATTACAAGGGATCTCAAGTGGGGTGTTTCGGTTCCACATGATGGCTTTAGGGACAAGGTATTCTACGTGTGGTTCGATGCTCCTATTGGATACATCTCCATTACCAAGTGTTGCACTCCTGATCACTGGGAGAAGTGGTGGAAGAATTCTGAGGATGTCGAATTGTATCAGTTTATGGGAAAGGACAATGTGCCATTCCACACAGTCATGTTTCCCTCCGCGCTCCTTGGAACCGGAGAAATGTGGGCACTGATGAAGAATATCAGTGTCACAGAGTACTTGAACTATGAAAAAGCCAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

145

Amino Acids

17.02

Weight (kDa)

7.67

Isoelectric Point (pI)

23.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	2 - 145	5.9e-46	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017373)

Species	Orthologous Gene IDs
malus_domestica	MD10G1160800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0414261 RchiOBHm_Chr4g0445731
rosa_laevigata	RLG00000005712
rosa_multiflora	Rmu_sc0003637.1_g000009 Rmu_sc0003637.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121530
rosa_samantha	Rh4AG426200 Rh4CG453200 Rh4DG180400 Rh4DG181300 Rh4DG434400
rosa_wichuraiana	Rw4G036500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccII	CGCG	3 cut(s)	22, 30, 353
AciI	CCGC	4 cut(s)	20, 22, 83, 351
AclI	AACGTT	1 cut(s)	127
AclWI	GGATC	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	82, 173
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	89, 415
AjnI	CCWGG	1 cut(s)	101
AlwI	GGATC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	57
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	215
BclI	TGATCA	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	215
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	103
BmiI	GGNNCC	3 cut(s)	56, 165, 364
BmrFI	CCNGG	1 cut(s)	103
BmrI	ACTGGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	268
BpuEI	CTTGAG	2 cut(s)	50, 131
BsaAI	YACGTR	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	20, 358
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 173
Bse1I	ACTGG	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	2 cut(s)	20, 358
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	2 cut(s)	82, 173
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	382
Bsh1236I	CGCG	3 cut(s)	22, 30, 353
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	82, 173
BsmFI	GGGAC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	57, 382
Bsp143I	GATC	2 cut(s)	142, 253
Bsp68I	TCGCGA	1 cut(s)	30
BspACI	CCGC	4 cut(s)	20, 22, 83, 351
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	3 cut(s)	22, 30, 353
BspLI	GGNNCC	3 cut(s)	56, 165, 364
BspPI	GGATC	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	20, 358
BssMI	GATC	2 cut(s)	142, 253
BssT1I	CCWWGG	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	3 cut(s)	22, 30, 353
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	2 cut(s)	145, 256
BstMBI	GATC	2 cut(s)	142, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstSLI	GKGCMC	1 cut(s)	382
BstUI	CGCG	3 cut(s)	22, 30, 353
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	3 cut(s)	256, 380, 403
BtuMI	TCGCGA	1 cut(s)	30
CfoI	GCGC	1 cut(s)	355
Cfr42I	CCGCGG	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	2 cut(s)	170, 340
CviJI	RGCY	6 cut(s)	55, 75, 106, 118, 177, 428
CviKI_1	RGCY	6 cut(s)	55, 75, 106, 118, 177, 428
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	2 cut(s)	144, 255
DpnII	GATC	2 cut(s)	142, 253
Eco130I	CCWWGG	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	2 cut(s)	173, 343
FaiI	YATR	4 cut(s)	171, 308, 341, 420
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	169, 339
FbaI	TGATCA	1 cut(s)	253
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	1 cut(s)	57
GlaI	GCGC	1 cut(s)	354
HapII	CCGG	1 cut(s)	366
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	2 cut(s)	173, 343
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	366
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	2 cut(s)	29, 251
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	2 cut(s)	127, 198
HpyCH4V	TGCA	3 cut(s)	9, 132, 246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	2 cut(s)	127, 198
Hsp92II	CATG	2 cut(s)	173, 343
HspAI	GCGC	1 cut(s)	353
Ksp22I	TGATCA	1 cut(s)	253
KspI	CCGCGG	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	142, 253
LmnI	GCTCC	3 cut(s)	60, 217, 360
LpnPI	CCDG	7 cut(s)	35, 88, 89, 115, 244, 264, 379
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	2 cut(s)	127, 198
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	2 cut(s)	144, 255
MboI	GATC	2 cut(s)	142, 253
MboII	GAAGA	2 cut(s)	286, 400
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	57, 382
MluCI	AATT	2 cut(s)	277, 293
MnlI	CCTC	3 cut(s)	106, 277, 358
MseI	TTAA	2 cut(s)	120, 436
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	3 cut(s)	22, 30, 353
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	2 cut(s)	142, 253
NlaIII	CATG	2 cut(s)	173, 343
NlaIV	GGNNCC	3 cut(s)	56, 165, 364
NmuCI	GTSAC	1 cut(s)	400
NruI	TCGCGA	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	173
Ppu21I	YACGTR	1 cut(s)	199
Psp1406I	AACGTT	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	3 cut(s)	56, 165, 364
PsuI	RGATCY	1 cut(s)	142
RruI	TCGCGA	1 cut(s)	30
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	338
SacII	CCGCGG	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	120, 436
Sau3AI	GATC	2 cut(s)	142, 253
ScaI	AGTACT	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	2 cut(s)	57, 382
SetI	ASST	3 cut(s)	130, 192, 201
SfaNI	GCATC	1 cut(s)	199
Sfr303I	CCGCGG	1 cut(s)	23
SgrBI	CCGCGG	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	2 cut(s)	65, 146
SmoI	CTYRAG	2 cut(s)	65, 146
Sse9I	AATT	2 cut(s)	277, 293
SsiI	CCGC	4 cut(s)	20, 22, 83, 351
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	2 cut(s)	130, 201
TaqI	TCGA	2 cut(s)	207, 291
TasI	AATT	2 cut(s)	277, 293
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	2 cut(s)	120, 436
Tru9I	TTAA	2 cut(s)	120, 436
TscAI	CASTG	3 cut(s)	263, 387, 403
TseFI	GTSAC	1 cut(s)	400
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	401, 435
TspRI	CASTG	3 cut(s)	263, 387, 403
Van91I	CCANNNNNTGG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	277
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.