Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017373

Physical Location & Seq

Genomic Coordinates Forward (+)

38677481 .. 38678313

Gene Structure 833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38469

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAAATGGTTCGTGGATTTTGTAGGTACTATGCGATTCATCGGCAGGTGTATGAGTCGTTCAATATAAGTTTTGACAAATTCGGGCGAACTTCGACGCCGGAGCAGACGGAGGTGTGCCAAGCAATTTTCAATAGGCTGCTGGAGAATAATTGGCTTTCTGAGAATACAATGCAGCAGCTATGTTGTGACACTTGCACACGGTTTTTAGCCGACAGGCTCGTGGAGGGGACGTGCCCAACTCAAGCTTGTGATTATACTTCTGCAAGAGGAGATCAGTGTGAGAACTGTGGGAAGCTTTTAAACCCCATTGAATTAAAGGATCCGAAGTGCAAGGCCTGTAAGTTGACTCCACAGATTCGTGATACAAACCATTTGTTTCCTGGAACTGCATTTGCTGAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

135

Amino Acids

15.45

Weight (kDa)

5.68

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	9 - 127	2.3e-36	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017373)

Species	Orthologous Gene IDs
malus_domestica	MD10G1160800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0414261 RchiOBHm_Chr4g0445731
rosa_laevigata	RLG00000005712
rosa_multiflora	Rmu_sc0003637.1_g000009 Rmu_sc0003637.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121530
rosa_samantha	Rh4AG426200 Rh4CG453200 Rh4DG180400 Rh4DG181300 Rh4DG434400
rosa_wichuraiana	Rw4G036500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
Acc36I	ACCTGC	1 cut(s)	37
AclWI	GGATC	2 cut(s)	317, 330
AcsI	RAATTY	1 cut(s)	80
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	64, 133, 314
AjiI	CACGTC	1 cut(s)	234
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	3 cut(s)	181, 248, 298
AluI	AGCT	3 cut(s)	181, 248, 298
AlwI	GGATC	2 cut(s)	317, 330
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	3 cut(s)	139, 175, 178
ApoI	RAATTY	1 cut(s)	80
Asp700I	GAANNNNTTC	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	239
BamHI	GGATCC	1 cut(s)	322
BauI	CACGAG	1 cut(s)	221
BbvI	GCAGC	3 cut(s)	126, 187, 190
BciT130I	CCWGG	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	3 cut(s)	140, 176, 179
BlsI	GCNGC	3 cut(s)	141, 177, 180
Bme1390I	CCNGG	1 cut(s)	384
BmgBI	CACGTC	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	98
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
BseBI	CCWGG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	285
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	3 cut(s)	126, 187, 190
BshFI	GGCC	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	274, 322
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	324
BspMI	ACCTGC	1 cut(s)	37
BspPI	GGATC	2 cut(s)	317, 330
BssMI	GATC	2 cut(s)	274, 322
BssNI	GRCGYC	1 cut(s)	98
BssSI	CACGAG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	204, 290
BstACI	GRCGYC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	277, 325
BstMBI	GATC	2 cut(s)	274, 322
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	239
BstV1I	GCAGC	3 cut(s)	126, 187, 190
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	338
BtrI	CACGTC	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	284
BveI	ACCTGC	1 cut(s)	37
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	28
CviJI	RGCY	8 cut(s)	139, 157, 181, 212, 220, 248, 298, 338
CviKI_1	RGCY	8 cut(s)	139, 157, 181, 212, 220, 248, 298, 338
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	2 cut(s)	276, 324
DpnII	GATC	2 cut(s)	274, 322
DraI	TTTAAA	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	382
FaiI	YATR	5 cut(s)	33, 54, 68, 184, 258
FaqI	GGGAC	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	140, 176, 179
Fsp4HI	GCNGC	3 cut(s)	140, 176, 179
GluI	GCNGC	3 cut(s)	140, 176, 179
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HindIII	AAGCTT	2 cut(s)	246, 296
HinfI	GANTC	4 cut(s)	37, 56, 349, 358
HpaII	CCGG	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	2 cut(s)	163, 327
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	2 cut(s)	204, 290
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	5 cut(s)	175, 198, 266, 333, 392
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	274, 322
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	7 cut(s)	32, 114, 128, 202, 352, 369, 396
Lsp1109I	GCAGC	3 cut(s)	126, 187, 190
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	2 cut(s)	276, 324
MboI	GATC	2 cut(s)	274, 322
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	4 cut(s)	80, 126, 151, 314
MlyI	GAGTC	2 cut(s)	65, 343
MnlI	CCTC	3 cut(s)	106, 220, 263
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	2 cut(s)	302, 317
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
NdeII	GATC	2 cut(s)	274, 322
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	188
PaqCI	CACCTGC	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	37, 358
PfoI	TCCNGGA	1 cut(s)	382
PkrI	GCNGC	3 cut(s)	141, 177, 180
PleI	GAGTC	2 cut(s)	64, 343
PpsI	GAGTC	2 cut(s)	64, 343
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	324
PsrI	GAACNNNNNNTAC	2 cut(s)	44, 76
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	302, 317
SatI	GCNGC	3 cut(s)	140, 176, 179
Sau3AI	GATC	2 cut(s)	274, 322
SchI	GAGTC	2 cut(s)	65, 343
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	7 cut(s)	29, 51, 117, 183, 236, 250, 300
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	4 cut(s)	80, 126, 151, 314
SseBI	AGGCCT	1 cut(s)	338
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	382
TaaI	ACNGT	2 cut(s)	204, 290
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	95
TasI	AATT	4 cut(s)	80, 126, 151, 314
TfiI	GAWTC	2 cut(s)	37, 358
Tru1I	TTAA	2 cut(s)	302, 317
Tru9I	TTAA	2 cut(s)	302, 317
TscAI	CASTG	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	3 cut(s)	139, 175, 178
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	284
XapI	RAATTY	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.