Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017373

Physical Location & Seq

Genomic Coordinates Forward (+)

54152223 .. 54152588

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGGAGACCTCGCCGCCGCTTCCAAGGAGGGCCCCAAGCTCCCCATCCCCGCCAACGCAACGTCCTCATCACCGGCGCGCTGCCCTACGTCAACAACGTCCCTCATCTCGGCAACATCATCGGCTGCGTTCTCGGCGCCGACGTCTTCGCTCGCTATCGCCGTCTCCGGGGATACAACACCGTCTATATCTCGCGGCACCGATGAGTACGGCACCGCCACCGAGACCAAAGCCCCGAAGGAGAAGTGTAGCCCCAAGGAGATCTGCGATAAGTACTATGCGATTCATCGGCAGGTGTATGAGTGGTTCAATATTAGTTTTGACAAATTCGGCGCGAACTTCGACGCCGGAGCGTACGGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

121

Amino Acids

12.64

Weight (kDa)

5.37

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	66 - 111	2.5e-12	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017373)

Species	Orthologous Gene IDs
malus_domestica	MD10G1160800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0414261 RchiOBHm_Chr4g0445731
rosa_laevigata	RLG00000005712
rosa_multiflora	Rmu_sc0003637.1_g000009 Rmu_sc0003637.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121530
rosa_samantha	Rh4AG426200 Rh4CG453200 Rh4DG180400 Rh4DG181300 Rh4DG434400
rosa_wichuraiana	Rw4G036500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	283
AatII	GACGTC	1 cut(s)	146
Acc36I	ACCTGC	1 cut(s)	283
AccB1I	GGYRCC	3 cut(s)	136, 197, 212
AccII	CGCG	3 cut(s)	79, 195, 335
AciI	CCGC	5 cut(s)	15, 18, 51, 195, 216
AcsI	RAATTY	1 cut(s)	326
AcyI	GRCGYC	3 cut(s)	137, 143, 345
AfaI	GTAC	3 cut(s)	209, 275, 356
AfiI	CCNNNNNNNGG	2 cut(s)	109, 168
AgsI	TTSAA	1 cut(s)	310
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw26I	GTCTC	2 cut(s)	169, 218
AoxI	GGCC	1 cut(s)	31
ApaI	GGGCCC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	81, 125
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	4 cut(s)	79, 81, 139, 335
AspS9I	GGNCC	2 cut(s)	31, 32
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	63
BaeGI	GKGCMC	1 cut(s)	35
BanI	GGYRCC	3 cut(s)	136, 197, 212
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	68, 112
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	2 cut(s)	146, 226
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciVI	GTATCC	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	169, 218
BfoI	RGCGCY	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	166
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	5 cut(s)	15, 18, 82, 126, 196
BlsI	GCNGC	5 cut(s)	16, 19, 83, 127, 197
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	31, 32
BmiI	GGNNCC	5 cut(s)	33, 34, 138, 199, 214
BmrFI	CCNGG	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	169
BsaHI	GRCGYC	3 cut(s)	137, 143, 345
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	24, 168, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 168
Bse118I	RCCGGY	1 cut(s)	73
BseDI	CCNNGG	3 cut(s)	24, 168, 255
BseGI	GGATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	109, 168
BsePI	GCGCGC	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	68, 112
Bsh1236I	CGCG	3 cut(s)	79, 195, 335
BshFI	GGCC	1 cut(s)	33
BshNI	GGYRCC	3 cut(s)	136, 197, 212
BsiSI	CCGG	3 cut(s)	74, 168, 348
BsiWI	CGTACG	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	109, 168
BsmAI	GTCTC	2 cut(s)	169, 218
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	33
Bso31I	GGTCTC	1 cut(s)	218
Bsp120I	GGGCCC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	5 cut(s)	15, 18, 51, 195, 216
BspANI	GGCC	1 cut(s)	33
BspFNI	CGCG	3 cut(s)	79, 195, 335
BspLI	GGNNCC	5 cut(s)	33, 34, 138, 199, 214
BspMI	ACCTGC	1 cut(s)	283
BspT107I	GGYRCC	3 cut(s)	136, 197, 212
BspTNI	GGTCTC	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	3 cut(s)	24, 168, 255
BssHII	GCGCGC	1 cut(s)	77
BssMI	GATC	1 cut(s)	261
BssNI	GRCGYC	3 cut(s)	137, 143, 345
BssT1I	CCWWGG	2 cut(s)	24, 255
Bst4CI	ACNGT	1 cut(s)	183
BstACI	GRCGYC	3 cut(s)	137, 143, 345
BstC8I	GCNNGC	2 cut(s)	79, 153
BstF5I	GGATG	1 cut(s)	45
BstFNI	CGCG	3 cut(s)	79, 195, 335
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	4 cut(s)	79, 81, 139, 335
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	2 cut(s)	169, 218
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	167
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	3 cut(s)	79, 195, 335
BstV1I	GCAGC	2 cut(s)	68, 112
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	45
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	2 cut(s)	79, 153
CfoI	GCGC	4 cut(s)	79, 81, 139, 335
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	31, 32
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	3 cut(s)	208, 274, 355
CviJI	RGCY	5 cut(s)	33, 40, 125, 233, 252
CviKI_1	RGCY	5 cut(s)	33, 40, 125, 233, 252
CviQI	GTAC	3 cut(s)	208, 274, 355
DinI	GGCGCC	1 cut(s)	138
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
Eco130I	CCWWGG	2 cut(s)	24, 255
Eco24I	GRGCYC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	218
EcoO109I	RGGNCCY	2 cut(s)	31, 32
EcoT14I	CCWWGG	2 cut(s)	24, 255
EcoT38I	GRGCYC	1 cut(s)	35
EgeI	GGCGCC	1 cut(s)	138
EheI	GGCGCC	1 cut(s)	138
ErhI	CCWWGG	2 cut(s)	24, 255
Esp3I	CGTCTC	1 cut(s)	169
FaiI	YATR	3 cut(s)	188, 279, 300
FaqI	GGGAC	1 cut(s)	85
FauI	CCCGC	1 cut(s)	58
Fnu4HI	GCNGC	5 cut(s)	15, 18, 82, 126, 196
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	5 cut(s)	15, 18, 82, 126, 196
GlaI	GCGC	4 cut(s)	78, 80, 138, 334
GluI	GCNGC	5 cut(s)	15, 18, 82, 126, 196
HaeII	RGCGCY	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	3 cut(s)	74, 168, 348
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	4 cut(s)	79, 81, 139, 335
Hin1I	GRCGYC	3 cut(s)	137, 143, 345
Hin6I	GCGC	4 cut(s)	77, 79, 137, 333
HinP1I	GCGC	4 cut(s)	77, 79, 137, 333
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HinfI	GANTC	1 cut(s)	283
HpaII	CCGG	3 cut(s)	74, 168, 348
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	93
Hpy8I	GTNNAC	1 cut(s)	93
Hpy99I	CGWCG	2 cut(s)	145, 347
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4IV	ACGT	4 cut(s)	62, 89, 98, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpySE526I	ACGT	4 cut(s)	62, 89, 98, 143
Hsp92I	GRCGYC	3 cut(s)	137, 143, 345
HspAI	GCGC	4 cut(s)	77, 79, 137, 333
KasI	GGCGCC	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	45, 350
LpnPI	CCDG	4 cut(s)	87, 181, 278, 361
Lsp1109I	GCAGC	2 cut(s)	68, 112
MaeII	ACGT	4 cut(s)	62, 89, 98, 143
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	1 cut(s)	138
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	1 cut(s)	326
Mly113I	GGCGCC	1 cut(s)	137
MnlI	CCTC	4 cut(s)	20, 22, 76, 113
MspI	CCGG	3 cut(s)	74, 168, 348
MspR9I	CCNGG	1 cut(s)	169
MvnI	CGCG	3 cut(s)	79, 195, 335
MwoI	GCNNNNNNNGC	1 cut(s)	134
NarI	GGCGCC	1 cut(s)	137
NciI	CCSGG	1 cut(s)	169
NdeII	GATC	1 cut(s)	261
NlaIV	GGNNCC	5 cut(s)	33, 34, 138, 199, 214
NmeAIII	GCCGAG	2 cut(s)	89, 113
PaqCI	CACCTGC	1 cut(s)	283
PauI	GCGCGC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	3 cut(s)	95, 140, 159
PfeI	GAWTC	1 cut(s)	283
Pfl23II	CGTACG	1 cut(s)	354
PkrI	GCNGC	5 cut(s)	16, 19, 83, 127, 197
PluTI	GGCGCC	1 cut(s)	140
PspLI	CGTACG	1 cut(s)	354
PspN4I	GGNNCC	5 cut(s)	33, 34, 138, 199, 214
PspOMI	GGGCCC	1 cut(s)	31
PspPI	GGNCC	2 cut(s)	31, 32
PsrI	GAACNNNNNNTAC	2 cut(s)	290, 322
PsuI	RGATCY	1 cut(s)	261
PteI	GCGCGC	1 cut(s)	77
RsaI	GTAC	3 cut(s)	209, 275, 356
RsaNI	GTAC	3 cut(s)	208, 274, 355
SatI	GCNGC	5 cut(s)	15, 18, 82, 126, 196
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	2 cut(s)	31, 32
ScaI	AGTACT	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	7 cut(s)	12, 42, 65, 92, 101, 146, 297
SfoI	GGCGCC	1 cut(s)	138
SgrAI	CRCCGGYG	1 cut(s)	73
Sse9I	AATT	1 cut(s)	326
SsiI	CCGC	5 cut(s)	15, 18, 51, 195, 216
SspDI	GGCGCC	1 cut(s)	136
SspI	AATATT	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	2 cut(s)	24, 255
TaaI	ACNGT	1 cut(s)	183
TaiI	ACGT	4 cut(s)	65, 92, 101, 146
TaqI	TCGA	1 cut(s)	342
TasI	AATT	1 cut(s)	326
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	3 cut(s)	17, 20, 198
TfiI	GAWTC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	81, 125
TspDTI	ATGAA	1 cut(s)	275
XapI	RAATTY	1 cut(s)	326
ZraI	GACGTC	1 cut(s)	144
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.