Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017373

Physical Location & Seq

Genomic Coordinates Forward (+)

68619555 .. 68620112

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG453200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGAGATCTCGCCAAGCAGGACCAGAAGGTCCCCAAGCTCCCCCTGATCATCACCAGTGCCTTGCCATATGTTAACAACGTGCCCCACCTTGGGAACATCATCGGCTGTGTCTTGAGCGCTGATGTCTTTGCTCGGTACTGCCGTCTCCGGGGATACAATACCCTCTATATTTCCGGGACCGATGAGTATGGCAAGGCGACGGAGATCAAAGCCTTGGAAGAGAAGTGCAGCCCCCAAGAGATATGTGACAAGTATCACAGAATCCATAGGGAGGTAAGGAGGTTTATGAGTGGTTCAACATTACCTTTGACCAATTCGGCCGAACTTCCAGGCCACAGCAAACTGAGTCTGCCAAAAAAATTTCATGAAATTGCTGGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

128

Amino Acids

14.31

Weight (kDa)

8.91

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	13 - 77	6.1e-07	tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g	PF09334	17 - 93	1.6e-27	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017373)

Species	Orthologous Gene IDs
malus_domestica	MD10G1160800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0414261 RchiOBHm_Chr4g0445731
rosa_laevigata	RLG00000005712
rosa_multiflora	Rmu_sc0003637.1_g000009 Rmu_sc0003637.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121530
rosa_samantha	Rh4AG426200 Rh4CG453200 Rh4DG180400 Rh4DG181300 Rh4DG434400
rosa_wichuraiana	Rw4G036500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	362
AfaI	GTAC	1 cut(s)	140
AfeI	AGCGCT	1 cut(s)	121
AfiI	CCNNNNNNNGG	4 cut(s)	92, 93, 151, 274
AgsI	TTSAA	1 cut(s)	300
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	152
Aor51HI	AGCGCT	1 cut(s)	121
AoxI	GGCC	2 cut(s)	321, 334
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	3 cut(s)	22, 31, 180
AsuC2I	CCSGG	2 cut(s)	152, 178
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	3 cut(s)	22, 31, 180
BaeGI	GKGCMC	1 cut(s)	87
BaeI	ACNNNNGTAYC	2 cut(s)	130, 163
BbvI	GCAGC	1 cut(s)	243
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	333
BciVI	GTATCC	1 cut(s)	149
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	2 cut(s)	152, 178
BcoDI	GTCTC	1 cut(s)	152
BfoI	RGCGCY	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	149
BglII	AGATCT	1 cut(s)	7
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
Bme1390I	CCNGG	3 cut(s)	152, 178, 333
Bme18I	GGWCC	3 cut(s)	22, 31, 180
BmgT120I	GGNCC	3 cut(s)	22, 31, 180
BmiI	GGNNCC	2 cut(s)	33, 181
BmrFI	CCNGG	3 cut(s)	152, 178, 333
BpuEI	CTTGAG	1 cut(s)	136
BpuMI	CCSGG	2 cut(s)	152, 178
BsaJI	CCNNGG	3 cut(s)	91, 151, 216
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 93, 151, 274
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	3 cut(s)	91, 151, 216
BseLI	CCNNNNNNNGG	4 cut(s)	92, 93, 151, 274
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	87
BseX3I	CGGCCG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	243
BsgI	GTGCAG	1 cut(s)	250
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	2 cut(s)	323, 336
BsiEI	CGRYCG	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	151, 177
BslFI	GGGAC	2 cut(s)	17, 193
BslI	CCNNNNNNNGG	4 cut(s)	92, 93, 151, 274
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	2 cut(s)	17, 193
BsnI	GGCC	2 cut(s)	323, 336
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	7, 48, 207
BspANI	GGCC	2 cut(s)	323, 336
BspCNI	CTCAG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	33, 181
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	3 cut(s)	91, 151, 216
BssMI	GATC	3 cut(s)	7, 48, 207
BssT1I	CCWWGG	2 cut(s)	91, 216
Bst2UI	CCWGG	1 cut(s)	333
Bst6I	CTCTTC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	347
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	3 cut(s)	10, 51, 210
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	3 cut(s)	7, 48, 207
BstMCI	CGRYCG	1 cut(s)	324
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	3 cut(s)	150, 176, 331
BstSLI	GKGCMC	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BstZI	CGGCCG	1 cut(s)	321
BsuI	GTATCC	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	323, 336
BtsIMutI	CAGTG	1 cut(s)	64
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	3 cut(s)	22, 31, 180
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	1 cut(s)	368
CviJI	RGCY	6 cut(s)	40, 108, 215, 234, 323, 336
CviKI_1	RGCY	6 cut(s)	40, 108, 215, 234, 323, 336
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	3 cut(s)	9, 50, 209
DpnII	GATC	3 cut(s)	7, 48, 207
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	321
EagI	CGGCCG	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
EclXI	CGGCCG	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	91, 216
Eco47I	GGWCC	3 cut(s)	22, 31, 180
Eco47III	AGCGCT	1 cut(s)	121
Eco52I	CGGCCG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	91, 216
ErhI	CCWWGG	2 cut(s)	91, 216
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	1 cut(s)	371
FaiI	YATR	8 cut(s)	70, 72, 171, 192, 247, 270, 290, 369
FaqI	GGGAC	2 cut(s)	17, 193
FatI	CATG	1 cut(s)	367
FauNDI	CATATG	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	232
Fsp4HI	GCNGC	1 cut(s)	232
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	323, 336
HapII	CCGG	2 cut(s)	151, 177
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	371
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	264, 349
HpaI	GTTAAC	1 cut(s)	76
HpaII	CCGG	2 cut(s)	151, 177
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188III	TCNNGA	2 cut(s)	115, 368
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	371
HspAI	GCGC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	48
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	7, 48, 207
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	9 cut(s)	5, 38, 59, 70, 164, 190, 318, 345, 363
Lsp1109I	GCAGC	1 cut(s)	243
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	3 cut(s)	9, 50, 209
MboI	GATC	3 cut(s)	7, 48, 207
MboII	GAAGA	1 cut(s)	233
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	3 cut(s)	316, 362, 372
MlyI	GAGTC	1 cut(s)	358
MnlI	CCTC	3 cut(s)	176, 268, 276
MseI	TTAA	1 cut(s)	75
MspI	CCGG	2 cut(s)	151, 177
MspR9I	CCNGG	3 cut(s)	152, 178, 333
MvaI	CCWGG	1 cut(s)	333
NciI	CCSGG	2 cut(s)	152, 178
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	3 cut(s)	7, 48, 207
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	2 cut(s)	33, 181
NmuCI	GTSAC	1 cut(s)	248
PagI	TCATGA	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	264
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	233
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
PpuMI	RGGWCCY	1 cut(s)	31
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	2 cut(s)	33, 181
PspPI	GGNCC	3 cut(s)	22, 31, 180
PspPPI	RGGWCCY	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	3 cut(s)	7, 48, 207
Sau96I	GGNCC	3 cut(s)	22, 31, 180
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	3 cut(s)	152, 178, 333
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	7 cut(s)	33, 42, 84, 93, 279, 287, 310
SinI	GGWCC	3 cut(s)	22, 31, 180
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	3 cut(s)	316, 362, 372
StyD4I	CCNGG	3 cut(s)	150, 176, 331
StyI	CCWWGG	2 cut(s)	91, 216
TaiI	ACGT	1 cut(s)	84
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	3 cut(s)	316, 362, 372
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	356, 384
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	3 cut(s)	22, 31, 180
XapI	RAATTY	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.