Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003637.1

Orthogroup ID

OG0017373

Physical Location & Seq

Genomic Coordinates Reverse (-)

37223 .. 37504

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003637.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgggagctctcgccaagcaggaccagaaggtccccaagctccccctgatcatcaccagtgccttgccatatgttaacaacgtaccccgccttgggaacatcatcggctgtgtcttgagcgctgatatctttgctcggtactgccgtctccggggatacaataatctctatatttctgggaccgatgagtacggcaaggcgacggagaccaaagccttggaagagaagtgcaacccccaagagatacgtgacaagtatcacaaaatccatagggaggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

93

Amino Acids

10.57

Weight (kDa)

8.81

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017373)

Species	Orthologous Gene IDs
malus_domestica	MD10G1160800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0414261 RchiOBHm_Chr4g0445731
rosa_laevigata	RLG00000005712
rosa_multiflora	Rmu_sc0003637.1_g000009 Rmu_sc0003637.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121530
rosa_samantha	Rh4AG426200 Rh4CG453200 Rh4DG180400 Rh4DG181300 Rh4DG434400
rosa_wichuraiana	Rw4G036500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AciI	CCGC	1 cut(s)	88
AfaI	GTAC	3 cut(s)	84, 140, 191
AfeI	AGCGCT	1 cut(s)	121
AfiI	CCNNNNNNNGG	4 cut(s)	92, 93, 151, 274
AluBI	AGCT	2 cut(s)	8, 40
AluI	AGCT	2 cut(s)	8, 40
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	152, 200
Aor51HI	AGCGCT	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	3 cut(s)	22, 31, 180
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	3 cut(s)	22, 31, 180
BaeI	ACNNNNGTAYC	2 cut(s)	130, 163
BanII	GRGCYC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	10
BceAI	ACGGC	2 cut(s)	129, 208
BciVI	GTATCC	1 cut(s)	149
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	152, 200
BfoI	RGCGCY	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	3 cut(s)	22, 31, 180
BmgT120I	GGNCC	3 cut(s)	22, 31, 180
BmiI	GGNNCC	2 cut(s)	33, 181
BmrFI	CCNGG	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	3 cut(s)	91, 151, 216
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 93, 151, 274
Bse1I	ACTGG	1 cut(s)	57
BseDI	CCNNGG	3 cut(s)	91, 151, 216
BseLI	CCNNNNNNNGG	4 cut(s)	92, 93, 151, 274
BseNI	ACTGG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	151
BslFI	GGGAC	2 cut(s)	17, 193
BslI	CCNNNNNNNGG	4 cut(s)	92, 93, 151, 274
BsmAI	GTCTC	2 cut(s)	152, 200
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	2 cut(s)	17, 193
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	33, 181
BspTNI	GGTCTC	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	3 cut(s)	91, 151, 216
BssMI	GATC	1 cut(s)	48
BssT1I	CCWWGG	2 cut(s)	91, 216
Bst6I	CTCTTC	1 cut(s)	216
BstBAI	YACGTR	1 cut(s)	248
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	2 cut(s)	152, 200
BstMBI	GATC	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	64
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	3 cut(s)	22, 31, 180
Csp6I	GTAC	3 cut(s)	83, 139, 190
CviJI	RGCY	4 cut(s)	8, 40, 108, 215
CviKI_1	RGCY	4 cut(s)	8, 40, 108, 215
CviQI	GTAC	3 cut(s)	83, 139, 190
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	8
Eco130I	CCWWGG	2 cut(s)	91, 216
Eco24I	GRGCYC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	3 cut(s)	22, 31, 180
Eco47III	AGCGCT	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	91, 216
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	2 cut(s)	91, 216
Esp3I	CGTCTC	1 cut(s)	152
FaiI	YATR	4 cut(s)	70, 72, 171, 270
FaqI	GGGAC	2 cut(s)	17, 193
FauI	CCCGC	1 cut(s)	95
FauNDI	CATATG	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	48
FriOI	GRGCYC	1 cut(s)	10
GlaI	GCGC	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	123
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HpaI	GTTAAC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	81, 247
HpyCH4V	TGCA	1 cut(s)	231
HpySE526I	ACGT	2 cut(s)	81, 247
HspAI	GCGC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	48
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	2 cut(s)	5, 45
LpnPI	CCDG	6 cut(s)	5, 38, 59, 70, 162, 164
MaeII	ACGT	2 cut(s)	81, 247
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	10
MnlI	CCTC	1 cut(s)	268
MseI	TTAA	1 cut(s)	75
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	152
NciI	CCSGG	1 cut(s)	152
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	1 cut(s)	48
NlaIV	GGNNCC	2 cut(s)	33, 181
NmuCI	GTSAC	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	248
PpuMI	RGGWCCY	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	33, 181
PspPI	GGNCC	3 cut(s)	22, 31, 180
PspPPI	RGGWCCY	1 cut(s)	31
RsaI	GTAC	3 cut(s)	84, 140, 191
RsaNI	GTAC	3 cut(s)	83, 139, 190
SacI	GAGCTC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	3 cut(s)	22, 31, 180
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	5 cut(s)	10, 33, 42, 84, 250
SinI	GGWCC	3 cut(s)	22, 31, 180
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
SsiI	CCGC	1 cut(s)	88
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	2 cut(s)	91, 216
TaiI	ACGT	2 cut(s)	84, 250
TaqII	GACCGA	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	3 cut(s)	22, 31, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.