Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0017373

Physical Location & Seq

Genomic Coordinates Forward (+)

72244200 .. 72251082

Gene Structure 6883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG426200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGGAGCTCTCGCCAAGCAGGACCAGAAGGTCCCCAAGCTCCCCCTGATCATCACCAGTGCCTTGCCATATGTTAACAACATACCCCGCCTTGGGAATGTCATCGGCTGTGTCTTGAGCGCTGATATCTTTGCTCTGTACTGCCGTCTCCGGGGATACAATAACCTCTATATTTCCGGGACCGATGAGTATGGCAAGACGACGGAGACCAAAGCCTTGGAAGAGAAGTGCAACCCCCAAGAGATATGTGACAAGTATCACAAAATCCATAGGGAGAATGCGGTTCAAATCACAAATGCCTGGCTCAAAGAGGGGCTTAAACAACGTTGCATTACAAGGGATCTCAAGTGGGGTGTTTCGGTTCCACATGATGGCTTTAGGGACAAGGTATTCTACGTGTGGTTCGATGCTCCTATTGGATACATCTCCATTACCAAGTGTTGCACTCCTGATCACTGGGAGAAGTGGTGGAAGAATTCTGAGGATGTCGAATTGTATCAGTTTATGGGAAAGGACAATGTGCCATTCCACACAGTCATGTTTCCCTCCGCGCTCCTTGGAACCGGAGAAATGTGGGCACTGATGAAGAATATCAGTGTCACAGAGTACTTGAACTATGAAAAAGCCAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

211

Amino Acids

24.35

Weight (kDa)

8.08

Isoelectric Point (pI)

28.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	17 - 93	1.4e-22	tRNA synthetases class I (M)
tRNA-synt_1g	PF09334	91 - 211	6.4e-44	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017373)

Species	Orthologous Gene IDs
malus_domestica	MD10G1160800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0414261 RchiOBHm_Chr4g0445731
rosa_laevigata	RLG00000005712
rosa_multiflora	Rmu_sc0003637.1_g000009 Rmu_sc0003637.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121530
rosa_samantha	Rh4AG426200 Rh4CG453200 Rh4DG180400 Rh4DG181300 Rh4DG434400
rosa_wichuraiana	Rw4G036500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AccB7I	CCANNNNNTGG	1 cut(s)	371
AccII	CGCG	1 cut(s)	551
AciI	CCGC	3 cut(s)	88, 281, 549
AclI	AACGTT	1 cut(s)	325
AclWI	GGATC	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	475
AfaI	GTAC	2 cut(s)	140, 608
AfeI	AGCGCT	1 cut(s)	121
AfiI	CCNNNNNNNGG	4 cut(s)	92, 93, 151, 371
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	2 cut(s)	287, 613
AjnI	CCWGG	1 cut(s)	299
AluBI	AGCT	2 cut(s)	8, 40
AluI	AGCT	2 cut(s)	8, 40
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	152, 200
AlwI	GGATC	1 cut(s)	348
Aor51HI	AGCGCT	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	475
AspLEI	GCGC	2 cut(s)	122, 553
AspS9I	GGNCC	3 cut(s)	22, 31, 180
AsuC2I	CCSGG	2 cut(s)	152, 178
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	3 cut(s)	22, 31, 180
BaeGI	GKGCMC	1 cut(s)	580
BanII	GRGCYC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	10
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	301
BciVI	GTATCC	2 cut(s)	149, 413
BclI	TGATCA	2 cut(s)	48, 451
BcnI	CCSGG	2 cut(s)	152, 178
BcoDI	GTCTC	2 cut(s)	152, 200
BfoI	RGCGCY	1 cut(s)	123
BfuI	GTATCC	2 cut(s)	149, 413
BmcAI	AGTACT	1 cut(s)	608
Bme1390I	CCNGG	3 cut(s)	152, 178, 301
Bme18I	GGWCC	3 cut(s)	22, 31, 180
BmgT120I	GGNCC	3 cut(s)	22, 31, 180
BmiI	GGNNCC	4 cut(s)	33, 181, 363, 562
BmrFI	CCNGG	3 cut(s)	152, 178, 301
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	397
BmuI	ACTGGG	1 cut(s)	466
BpuEI	CTTGAG	2 cut(s)	136, 329
BpuMI	CCSGG	2 cut(s)	152, 178
BsaAI	YACGTR	1 cut(s)	397
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	4 cut(s)	91, 151, 216, 556
BsaWI	WCCGGW	1 cut(s)	563
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 93, 151, 371
Bse1I	ACTGG	2 cut(s)	57, 461
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	4 cut(s)	91, 151, 216, 556
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	4 cut(s)	92, 93, 151, 371
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	2 cut(s)	57, 461
BseSI	GKGCMC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	3 cut(s)	151, 177, 564
BslFI	GGGAC	3 cut(s)	17, 193, 395
BslI	CCNNNNNNNGG	4 cut(s)	92, 93, 151, 371
BsmAI	GTCTC	2 cut(s)	152, 200
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	3 cut(s)	17, 193, 395
BsmI	GAATGC	1 cut(s)	283
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	10, 580
Bsp143I	GATC	3 cut(s)	48, 340, 451
BspACI	CCGC	3 cut(s)	88, 281, 549
BspCNI	CTCAG	1 cut(s)	472
BspFNI	CGCG	1 cut(s)	551
BspLI	GGNNCC	4 cut(s)	33, 181, 363, 562
BspPI	GGATC	1 cut(s)	348
BspTNI	GGTCTC	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	57, 461
BssECI	CCNNGG	4 cut(s)	91, 151, 216, 556
BssMI	GATC	3 cut(s)	48, 340, 451
BssT1I	CCWWGG	3 cut(s)	91, 216, 556
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	535
Bst6I	CTCTTC	1 cut(s)	216
BstBAI	YACGTR	1 cut(s)	397
BstDEI	CTNAG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	1 cut(s)	551
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	122, 553
BstKTI	GATC	3 cut(s)	51, 343, 454
BstMAI	GTCTC	2 cut(s)	152, 200
BstMBI	GATC	3 cut(s)	48, 340, 451
BstNI	CCWGG	1 cut(s)	301
BstSCI	CCNGG	3 cut(s)	150, 176, 299
BstSLI	GKGCMC	1 cut(s)	580
BstUI	CGCG	1 cut(s)	551
BstX2I	RGATCY	1 cut(s)	340
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	340
BsuI	GTATCC	2 cut(s)	149, 413
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	4 cut(s)	64, 454, 578, 601
CfoI	GCGC	2 cut(s)	122, 553
Cfr13I	GGNCC	3 cut(s)	22, 31, 180
Csp6I	GTAC	2 cut(s)	139, 607
CviAII	CATG	2 cut(s)	368, 538
CviJI	RGCY	8 cut(s)	8, 40, 108, 215, 304, 316, 375, 626
CviKI_1	RGCY	8 cut(s)	8, 40, 108, 215, 304, 316, 375, 626
CviQI	GTAC	2 cut(s)	139, 607
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	3 cut(s)	50, 342, 453
DpnII	GATC	3 cut(s)	48, 340, 451
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	8
Eco130I	CCWWGG	3 cut(s)	91, 216, 556
Eco24I	GRGCYC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	3 cut(s)	22, 31, 180
Eco47III	AGCGCT	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	299
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	3 cut(s)	91, 216, 556
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	3 cut(s)	91, 216, 556
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	2 cut(s)	371, 541
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	3 cut(s)	17, 193, 395
FatI	CATG	2 cut(s)	367, 537
FauI	CCCGC	1 cut(s)	95
FauNDI	CATATG	1 cut(s)	70
FbaI	TGATCA	2 cut(s)	48, 451
FokI	GGATG	1 cut(s)	497
FriOI	GRGCYC	1 cut(s)	10
GlaI	GCGC	2 cut(s)	121, 552
HaeII	RGCGCY	1 cut(s)	123
HapII	CCGG	3 cut(s)	151, 177, 564
HhaI	GCGC	2 cut(s)	122, 553
Hin1II	CATG	2 cut(s)	371, 541
Hin6I	GCGC	2 cut(s)	120, 551
HinP1I	GCGC	2 cut(s)	120, 551
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HpaI	GTTAAC	1 cut(s)	76
HpaII	CCGG	3 cut(s)	151, 177, 564
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	2 cut(s)	115, 449
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4IV	ACGT	2 cut(s)	325, 396
HpyCH4V	TGCA	3 cut(s)	231, 330, 444
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	2 cut(s)	325, 396
Hsp92II	CATG	2 cut(s)	371, 541
HspAI	GCGC	2 cut(s)	120, 551
Ksp22I	TGATCA	2 cut(s)	48, 451
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	48, 340, 451
LmnI	GCTCC	4 cut(s)	5, 45, 415, 558
LweI	GCATC	1 cut(s)	397
MaeII	ACGT	2 cut(s)	325, 396
MaeIII	GTNAC	2 cut(s)	248, 598
MalI	GATC	3 cut(s)	50, 342, 453
MboI	GATC	3 cut(s)	48, 340, 451
MboII	GAAGA	3 cut(s)	233, 484, 598
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	10, 580
MluCI	AATT	2 cut(s)	475, 491
MnlI	CCTC	4 cut(s)	176, 304, 475, 556
MseI	TTAA	3 cut(s)	75, 318, 634
MslI	CAYNNNNRTG	1 cut(s)	536
MspI	CCGG	3 cut(s)	151, 177, 564
MspR9I	CCNGG	3 cut(s)	152, 178, 301
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	301
MvnI	CGCG	1 cut(s)	551
NciI	CCSGG	2 cut(s)	152, 178
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	3 cut(s)	48, 340, 451
NlaIII	CATG	2 cut(s)	371, 541
NlaIV	GGNNCC	4 cut(s)	33, 181, 363, 562
NmuCI	GTSAC	2 cut(s)	248, 598
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	371
PfoI	TCCNGGA	1 cut(s)	176
Ppu21I	YACGTR	1 cut(s)	397
PpuMI	RGGWCCY	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	10
Psp1406I	AACGTT	1 cut(s)	325
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	299
PspN4I	GGNNCC	4 cut(s)	33, 181, 363, 562
PspPI	GGNCC	3 cut(s)	22, 31, 180
PspPPI	RGGWCCY	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	2 cut(s)	140, 608
RsaNI	GTAC	2 cut(s)	139, 607
RseI	CAYNNNNRTG	1 cut(s)	536
SacI	GAGCTC	1 cut(s)	10
SaqAI	TTAA	3 cut(s)	75, 318, 634
Sau3AI	GATC	3 cut(s)	48, 340, 451
Sau96I	GGNCC	3 cut(s)	22, 31, 180
ScaI	AGTACT	1 cut(s)	608
ScrFI	CCNGG	3 cut(s)	152, 178, 301
SduI	GDGCHC	2 cut(s)	10, 580
SetI	ASST	7 cut(s)	10, 33, 42, 168, 328, 390, 399
SfaNI	GCATC	1 cut(s)	397
SinI	GGWCC	3 cut(s)	22, 31, 180
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	2 cut(s)	115, 344
SmoI	CTYRAG	2 cut(s)	115, 344
Sse9I	AATT	2 cut(s)	475, 491
SsiI	CCGC	3 cut(s)	88, 281, 549
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	3 cut(s)	150, 176, 299
StyI	CCWWGG	3 cut(s)	91, 216, 556
TaaI	ACNGT	1 cut(s)	535
TaiI	ACGT	2 cut(s)	328, 399
TaqI	TCGA	2 cut(s)	405, 489
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	475, 491
TatI	WGTACW	2 cut(s)	138, 606
Tru1I	TTAA	3 cut(s)	75, 318, 634
Tru9I	TTAA	3 cut(s)	75, 318, 634
TscAI	CASTG	4 cut(s)	64, 461, 585, 601
TseFI	GTSAC	2 cut(s)	248, 598
Tsp45I	GTSAC	2 cut(s)	248, 598
TspDTI	ATGAA	2 cut(s)	599, 633
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	4 cut(s)	64, 461, 585, 601
Van91I	CCANNNNNTGG	1 cut(s)	371
VpaK11BI	GGWCC	3 cut(s)	22, 31, 180
XapI	RAATTY	1 cut(s)	475
ZrmI	AGTACT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.