Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0017373

Physical Location & Seq

Genomic Coordinates Forward (+)

63317054 .. 63318434

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G036500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGAGCTCTCGCCAAGCAGGACCAGAAGGTCCCCAAGCTCCCCCTGATCATCACCAGTGCCTTGCCATATGTTAACAACGTACCCCGCCTTGGGAACATCATCGGCTGTGTCTTGAGCGCTGATATCTTTGCTCGGTACTGCCGTCTCCGGGGATACAATAATCTCTATATTTCTGGGACGGATGAGTACGGCAAGGCGACGGAGACCAAAGCCTTGGAAGAGAAGTGCAACCCCCAAGAGATATGTGACAAGTTGGAAGAATACATCAATAGAGAATCAGTGGAAGGGTGTTGGAGCCAGAATGCGGTTCAAATCACAAATGCCTGGCTCAAAGAGGGGCTTAAACAACGTTGCACTACAAGGGATCTCAAGTGGGGTGTTTCGGTTCCACATGATGGCTTTAGGGACAAGGTATTCTACGTGTGGTTCAATGCTCCTATTGGATACATCTCCATTACCGAGTGTTGCACTCCTGATCACTGGGAGAAGTGGTGGAAGAATTCTGAGGATGTCGAATTGTATAAGTTTATGGGAAAGGACAATGTGCCATTCCACACAGTCATGTTTCCCTCCTCCCTCCTTGGAACCGGAGAAATGTGGGCACTGATGAAGAATATCAGTGTCACAGAGTATTTGAACTATGAAAAAGCCAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

220

Amino Acids

25.33

Weight (kDa)

6.33

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	17 - 91	1.5e-22	tRNA synthetases class I (M)
tRNA-synt_1g	PF09334	84 - 220	2.3e-44	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017373)

Species	Orthologous Gene IDs
malus_domestica	MD10G1160800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0414261 RchiOBHm_Chr4g0445731
rosa_laevigata	RLG00000005712
rosa_multiflora	Rmu_sc0003637.1_g000009 Rmu_sc0003637.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121530
rosa_samantha	Rh4AG426200 Rh4CG453200 Rh4DG180400 Rh4DG181300 Rh4DG434400
rosa_wichuraiana	Rw4G036500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AccB7I	CCANNNNNTGG	1 cut(s)	398
AciI	CCGC	2 cut(s)	88, 308
AclI	AACGTT	1 cut(s)	352
AclWI	GGATC	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	502
AfaI	GTAC	3 cut(s)	84, 140, 191
AfeI	AGCGCT	1 cut(s)	121
AfiI	CCNNNNNNNGG	5 cut(s)	92, 93, 151, 307, 398
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	3 cut(s)	314, 433, 640
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	2 cut(s)	8, 40
AluI	AGCT	2 cut(s)	8, 40
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	152, 200
AlwI	GGATC	1 cut(s)	375
Aor51HI	AGCGCT	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	22, 31
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	2 cut(s)	22, 31
BaeGI	GKGCMC	1 cut(s)	607
BaeI	ACNNNNGTAYC	2 cut(s)	130, 163
BanII	GRGCYC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	10
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	2 cut(s)	129, 208
BciT130I	CCWGG	1 cut(s)	328
BciVI	GTATCC	2 cut(s)	149, 440
BclI	TGATCA	2 cut(s)	48, 478
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	152, 200
BfoI	RGCGCY	1 cut(s)	123
BfuI	GTATCC	2 cut(s)	149, 440
Bme1390I	CCNGG	2 cut(s)	152, 328
Bme18I	GGWCC	2 cut(s)	22, 31
BmgT120I	GGNCC	2 cut(s)	22, 31
BmiI	GGNNCC	4 cut(s)	33, 299, 390, 589
BmrFI	CCNGG	2 cut(s)	152, 328
BmrI	ACTGGG	1 cut(s)	493
BmuI	ACTGGG	1 cut(s)	493
BpuEI	CTTGAG	2 cut(s)	136, 356
BpuMI	CCSGG	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	424
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	4 cut(s)	91, 151, 216, 583
BsaWI	WCCGGW	1 cut(s)	590
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	5 cut(s)	92, 93, 151, 307, 398
Bse1I	ACTGG	2 cut(s)	57, 488
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	4 cut(s)	91, 151, 216, 583
BseGI	GGATG	2 cut(s)	190, 517
BseLI	CCNNNNNNNGG	5 cut(s)	92, 93, 151, 307, 398
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	2 cut(s)	57, 488
BseRI	GAGGAG	1 cut(s)	565
BseSI	GKGCMC	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	151, 591
BslFI	GGGAC	3 cut(s)	17, 193, 422
BslI	CCNNNNNNNGG	5 cut(s)	92, 93, 151, 307, 398
BsmAI	GTCTC	2 cut(s)	152, 200
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	3 cut(s)	17, 193, 422
BsmI	GAATGC	1 cut(s)	310
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	10, 607
Bsp143I	GATC	3 cut(s)	48, 367, 478
BspACI	CCGC	2 cut(s)	88, 308
BspCNI	CTCAG	1 cut(s)	499
BspLI	GGNNCC	4 cut(s)	33, 299, 390, 589
BspPI	GGATC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	57, 488
BssECI	CCNNGG	4 cut(s)	91, 151, 216, 583
BssMI	GATC	3 cut(s)	48, 367, 478
BssT1I	CCWWGG	3 cut(s)	91, 216, 583
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	1 cut(s)	216
BstBAI	YACGTR	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	507
BstF5I	GGATG	2 cut(s)	190, 517
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	3 cut(s)	51, 370, 481
BstMAI	GTCTC	2 cut(s)	152, 200
BstMBI	GATC	3 cut(s)	48, 367, 478
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	2 cut(s)	150, 326
BstSLI	GKGCMC	1 cut(s)	607
BstX2I	RGATCY	1 cut(s)	367
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	367
BsuI	GTATCC	2 cut(s)	149, 440
BtsCI	GGATG	2 cut(s)	190, 517
BtsIMutI	CAGTG	5 cut(s)	64, 288, 481, 605, 628
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	22, 31
Csp6I	GTAC	3 cut(s)	83, 139, 190
CviAII	CATG	2 cut(s)	395, 565
CviJI	RGCY	9 cut(s)	8, 40, 108, 215, 300, 331, 343, 402, 653
CviKI_1	RGCY	9 cut(s)	8, 40, 108, 215, 300, 331, 343, 402, 653
CviQI	GTAC	3 cut(s)	83, 139, 190
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	3 cut(s)	50, 369, 480
DpnII	GATC	3 cut(s)	48, 367, 478
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	8
Eco130I	CCWWGG	3 cut(s)	91, 216, 583
Eco24I	GRGCYC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	22, 31
Eco47III	AGCGCT	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	326
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	3 cut(s)	91, 216, 583
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	3 cut(s)	91, 216, 583
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	2 cut(s)	398, 568
FaiI	YATR	9 cut(s)	70, 72, 171, 247, 396, 525, 533, 566, 645
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	3 cut(s)	17, 193, 422
FatI	CATG	2 cut(s)	394, 564
FauI	CCCGC	1 cut(s)	95
FauNDI	CATATG	1 cut(s)	70
FbaI	TGATCA	2 cut(s)	48, 478
FokI	GGATG	2 cut(s)	197, 524
FriOI	GRGCYC	1 cut(s)	10
GlaI	GCGC	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	123
HapII	CCGG	2 cut(s)	151, 591
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	398, 568
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	278
HpaI	GTTAAC	1 cut(s)	76
HpaII	CCGG	2 cut(s)	151, 591
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	508
Hpy188III	TCNNGA	2 cut(s)	115, 476
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	22, 281
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4IV	ACGT	3 cut(s)	81, 352, 423
HpyCH4V	TGCA	3 cut(s)	231, 357, 471
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	3 cut(s)	81, 352, 423
Hsp92II	CATG	2 cut(s)	398, 568
HspAI	GCGC	1 cut(s)	120
Ksp22I	TGATCA	2 cut(s)	48, 478
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	48, 367, 478
LmnI	GCTCC	4 cut(s)	5, 45, 297, 442
MaeII	ACGT	3 cut(s)	81, 352, 423
MaeIII	GTNAC	2 cut(s)	248, 625
MalI	GATC	3 cut(s)	50, 369, 480
MboI	GATC	3 cut(s)	48, 367, 478
MboII	GAAGA	4 cut(s)	233, 272, 511, 625
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	2 cut(s)	10, 607
MluCI	AATT	2 cut(s)	502, 518
MmeI	TCCRAC	2 cut(s)	237, 275
MnlI	CCTC	5 cut(s)	331, 502, 583, 586, 590
MseI	TTAA	3 cut(s)	75, 345, 661
MslI	CAYNNNNRTG	1 cut(s)	563
MspI	CCGG	2 cut(s)	151, 591
MspR9I	CCNGG	2 cut(s)	152, 328
Mva1269I	GAATGC	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	328
NciI	CCSGG	1 cut(s)	152
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	3 cut(s)	48, 367, 478
NlaIII	CATG	2 cut(s)	398, 568
NlaIV	GGNNCC	4 cut(s)	33, 299, 390, 589
NmuCI	GTSAC	2 cut(s)	248, 625
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PctI	GAATGC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	278
PflMI	CCANNNNNTGG	1 cut(s)	398
Ppu21I	YACGTR	1 cut(s)	424
PpuMI	RGGWCCY	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	10
Psp1406I	AACGTT	1 cut(s)	352
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	4 cut(s)	33, 299, 390, 589
PspPI	GGNCC	2 cut(s)	22, 31
PspPPI	RGGWCCY	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	3 cut(s)	84, 140, 191
RsaNI	GTAC	3 cut(s)	83, 139, 190
RseI	CAYNNNNRTG	1 cut(s)	563
SacI	GAGCTC	1 cut(s)	10
SaqAI	TTAA	3 cut(s)	75, 345, 661
Sau3AI	GATC	3 cut(s)	48, 367, 478
Sau96I	GGNCC	2 cut(s)	22, 31
ScrFI	CCNGG	2 cut(s)	152, 328
SduI	GDGCHC	2 cut(s)	10, 607
SetI	ASST	7 cut(s)	10, 33, 42, 84, 355, 417, 426
SinI	GGWCC	2 cut(s)	22, 31
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	2 cut(s)	115, 371
SmoI	CTYRAG	2 cut(s)	115, 371
Sse9I	AATT	2 cut(s)	502, 518
SsiI	CCGC	2 cut(s)	88, 308
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	2 cut(s)	150, 326
StyI	CCWWGG	3 cut(s)	91, 216, 583
TaaI	ACNGT	1 cut(s)	562
TaiI	ACGT	3 cut(s)	84, 355, 426
TaqI	TCGA	1 cut(s)	516
TasI	AATT	2 cut(s)	502, 518
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	3 cut(s)	75, 345, 661
Tru9I	TTAA	3 cut(s)	75, 345, 661
TscAI	CASTG	5 cut(s)	64, 288, 488, 612, 628
TseFI	GTSAC	2 cut(s)	248, 625
Tsp45I	GTSAC	2 cut(s)	248, 625
TspDTI	ATGAA	2 cut(s)	626, 660
TspGWI	ACGGA	2 cut(s)	197, 218
TspRI	CASTG	5 cut(s)	64, 288, 488, 612, 628
Van91I	CCANNNNNTGG	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	22, 31
XapI	RAATTY	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.