RLG00000005712

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
1073703 .. 1075054
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005712

Sequence Viewer

Length: 1227 bp
ATGGGAGATCTTGCCAAGCAGGACCAGAAGGTCCCCAAGCTCCCCCTTATCATCGCCAGTGCCTTGCCATATGTTAACAACGTACCCCACCTTGGGAACATCATCAGCTGTGTCTTGAGCACTGATGTCTTTGCTTGGTACTGCTGTCTCCGGGGATACAATATCCTCTATATTTTTAGGACCGATGATTACAGCAAGGCGACGGAGACAAAGCCTTGGAAGAGAAGTGCAACCCCCAAGAGATATGTGACAAATATCACAAAATCCATAAGGAGCACAATCCAGCAGCTCTATTGTGACACATGCAAGAGGTTCTTAGCGGACCAGTTCGTGGAGGGGACATGCCCTACTCAAGAACGTCACTATGATTCTGCTCGAGGAGACCAGTGTGACAAGTGTGGACAGCTCTTGAATCCGACAGAATTGAAAGATCCTAAATGCAAGGTTTGCAAAGAAACTCCGCGGACTCGCGAAACAAATCACTTGTTTCTGGGGCTCCCTTTGCTCAAGGATAGGTTGGAGGAATACATCAATAGAGAATCAGTGGAAGGGTGTTGGAGCCACAATGCGGTTCAAATCACAAATGCCTGGCTCAAAGAGGGGCTTAAACAACGTTGCATTACAAGGGATCTCAAGTGGGGTGTTTCGGTTCCACATGATGGCTTTAGGGACAAGGTATTCTACGTGTGGTTCGATGCTCCTATTGGATACATCTCTATTACCAAGTGTTACACTCCTGATCACTGGGAGAAGTGCTGGAAGAATTCTGAGGATGTCGAATTGTATCAGTTTATGGGAAAGGACAATGTACCATTCCACACAGTCATGTTTCCCTCCGCACTCCTTGGAACCGGAGAAAATTGGGCACTGATGAAGAATATCAGTGTCACGGAGTACTTGAACTACGAAAGAGGCAAGTTTTCCAAGAGTAGAGGGATCAAAGTGTTTGGAACTGATGCAAAAGGCACACGCATTCCGGTGGAAGTGTGGCGCTATTATCTTCTGACAAATAGGCCTAAAGTATCAGACACACTGTTTACCTGGGCCGATTTAAGCAAAAAACTCAAAAGTGAGTTGGTGGGAAATTTGGGAAACTTCATAAACAGAGTTTTGAGTTTTGTTGCCAAACCTTCAGGCAACGGAGGATACGGTTACACCATTCCTGATTCAACATATGCAGACTCTGATGCTTTGACACTTGAATTAGCAGAAAAAGTTGACAGATAA

Protein Analysis

409

Amino Acids

46.78

Weight (kDa)

8.76

Isoelectric Point (pI)

25.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1g PF09334 17 - 94 7.6e-14 tRNA synthetases class I (M)
tRNA-synt_1g PF09334 91 - 371 5.4e-101 tRNA synthetases class I (M)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017373)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 29
AccB7I CCANNNNNTGG 2 cut(s) 331, 659
AccII CGCG 2 cut(s) 463, 471
AciI CCGC 5 cut(s) 320, 461, 463, 569, 837
AclI AACGTT 1 cut(s) 613
AclWI GGATC 3 cut(s) 425, 636, 944
AcsI RAATTY 2 cut(s) 763, 1084
AcuI CTGAAG 1 cut(s) 1116
AfaI GTAC 4 cut(s) 84, 140, 810, 896
AfiI CCNNNNNNNGG 5 cut(s) 92, 93, 331, 568, 659
AflIII ACRYGT 1 cut(s) 684
AgsI TTSAA 6 cut(s) 412, 427, 575, 901, 1170, 1202
AjnI CCWGG 2 cut(s) 587, 1040
AluBI AGCT 4 cut(s) 40, 108, 289, 406
AluI AGCT 4 cut(s) 40, 108, 289, 406
Alw21I GWGCWC 2 cut(s) 122, 278
Alw26I GTCTC 3 cut(s) 152, 200, 375
AlwI GGATC 3 cut(s) 425, 636, 944
AlwNI CAGNNNCTG 1 cut(s) 1184
Ama87I CYCGRG 1 cut(s) 375
AoxI GGCC 2 cut(s) 1013, 1044
ApeKI GCWGC 1 cut(s) 286
ApoI RAATTY 2 cut(s) 763, 1084
AspLEI GCGC 1 cut(s) 993
AspS9I GGNCC 5 cut(s) 22, 31, 180, 322, 1044
AsuC2I CCSGG 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 375
AvaII GGWCC 4 cut(s) 22, 31, 180, 322
BaeGI GKGCMC 1 cut(s) 868
BaeI ACNNNNGTAYC 2 cut(s) 130, 163
BanII GRGCYC 1 cut(s) 498
Bbv12I GWGCWC 2 cut(s) 122, 278
BbvI GCAGC 1 cut(s) 298
BccI CCATC 1 cut(s) 653
BciT130I CCWGG 2 cut(s) 589, 1042
BciVI GTATCC 3 cut(s) 149, 701, 1139
BclI TGATCA 1 cut(s) 739
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 3 cut(s) 152, 200, 375
BfoI RGCGCY 1 cut(s) 994
BfuI GTATCC 3 cut(s) 149, 701, 1139
BglII AGATCT 1 cut(s) 7
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
BmcAI AGTACT 1 cut(s) 896
Bme1390I CCNGG 3 cut(s) 152, 589, 1042
Bme18I GGWCC 4 cut(s) 22, 31, 180, 322
BmeT110I CYCGRG 1 cut(s) 375
BmgT120I GGNCC 5 cut(s) 22, 31, 180, 322, 1044
BmiI GGNNCC 5 cut(s) 33, 497, 560, 651, 850
BmrFI CCNGG 3 cut(s) 152, 589, 1042
BmrI ACTGGG 1 cut(s) 754
BmsI GCATC 3 cut(s) 685, 946, 1177
BmuI ACTGGG 1 cut(s) 754
BpuEI CTTGAG 4 cut(s) 136, 336, 491, 617
BpuMI CCSGG 1 cut(s) 152
BsaAI YACGTR 1 cut(s) 685
BsaI GGTCTC 1 cut(s) 375
BsaJI CCNNGG 6 cut(s) 91, 151, 215, 461, 844, 1041
BsaWI WCCGGW 2 cut(s) 851, 976
Bsc4I CCNNNNNNNGG 5 cut(s) 92, 93, 331, 568, 659
Bse1I ACTGG 4 cut(s) 57, 325, 385, 749
BseBI CCWGG 2 cut(s) 589, 1042
BseDI CCNNGG 6 cut(s) 91, 151, 215, 461, 844, 1041
BseGI GGATG 1 cut(s) 778
BseLI CCNNNNNNNGG 5 cut(s) 92, 93, 331, 568, 659
BseMII CTCAG 1 cut(s) 759
BseNI ACTGG 4 cut(s) 57, 325, 385, 749
BseRI GAGGAG 1 cut(s) 393
BseSI GKGCMC 1 cut(s) 868
BseXI GCAGC 1 cut(s) 298
Bsh1236I CGCG 2 cut(s) 463, 471
BshFI GGCC 2 cut(s) 1015, 1046
BsiHKAI GWGCWC 2 cut(s) 122, 278
BsiHKCI CYCGRG 1 cut(s) 375
BsiSI CCGG 3 cut(s) 151, 852, 977
BslFI GGGAC 3 cut(s) 17, 352, 683
BslI CCNNNNNNNGG 5 cut(s) 92, 93, 331, 568, 659
BsmAI GTCTC 3 cut(s) 152, 200, 375
BsmFI GGGAC 3 cut(s) 17, 352, 683
BsmI GAATGC 1 cut(s) 972
BsnI GGCC 2 cut(s) 1015, 1046
Bso31I GGTCTC 1 cut(s) 375
BsoBI CYCGRG 1 cut(s) 375
Bsp1286I GDGCHC 4 cut(s) 122, 278, 498, 868
Bsp143I GATC 5 cut(s) 7, 430, 628, 739, 936
Bsp68I TCGCGA 1 cut(s) 471
BspACI CCGC 5 cut(s) 320, 461, 463, 569, 837
BspANI GGCC 2 cut(s) 1015, 1046
BspCNI CTCAG 1 cut(s) 760
BspFNI CGCG 2 cut(s) 463, 471
BspLI GGNNCC 5 cut(s) 33, 497, 560, 651, 850
BspPI GGATC 3 cut(s) 425, 636, 944
BspTNI GGTCTC 1 cut(s) 375
BsrI ACTGG 4 cut(s) 57, 325, 385, 749
BssECI CCNNGG 6 cut(s) 91, 151, 215, 461, 844, 1041
BssMI GATC 5 cut(s) 7, 430, 628, 739, 936
BssT1I CCWWGG 3 cut(s) 91, 215, 844
Bst2UI CCWGG 2 cut(s) 589, 1042
Bst4CI ACNGT 3 cut(s) 823, 1035, 1151
Bst6I CTCTTC 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 447
BstBAI YACGTR 1 cut(s) 685
BstDEI CTNAG 2 cut(s) 316, 768
BstDSI CCRYGG 1 cut(s) 461
BstF5I GGATG 1 cut(s) 778
BstFNI CGCG 2 cut(s) 463, 471
BstH2I RGCGCY 1 cut(s) 994
BstHHI GCGC 1 cut(s) 993
BstKTI GATC 5 cut(s) 10, 433, 631, 742, 939
BstMAI GTCTC 3 cut(s) 152, 200, 375
BstMBI GATC 5 cut(s) 7, 430, 628, 739, 936
BstMWI GCNNNNNNNGC 2 cut(s) 447, 502
BstNI CCWGG 2 cut(s) 589, 1042
BstNSI RCATGY 2 cut(s) 306, 345
BstSCI CCNGG 3 cut(s) 150, 587, 1040
BstSLI GKGCMC 1 cut(s) 868
BstUI CGCG 2 cut(s) 463, 471
BstV1I GCAGC 1 cut(s) 298
BstX2I RGATCY 3 cut(s) 7, 430, 628
BstYI RGATCY 3 cut(s) 7, 430, 628
BsuI GTATCC 3 cut(s) 149, 701, 1139
BsuRI GGCC 2 cut(s) 1015, 1046
BtgI CCRYGG 1 cut(s) 461
BtgZI GCGATG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 778
BtsIMutI CAGTG 8 cut(s) 64, 120, 392, 549, 742, 866, 889, 1031
BtuMI TCGCGA 1 cut(s) 471
CaiI CAGNNNCTG 1 cut(s) 1184
CfoI GCGC 1 cut(s) 993
Cfr13I GGNCC 5 cut(s) 22, 31, 180, 322, 1044
Cfr42I CCGCGG 1 cut(s) 464
Csp6I GTAC 4 cut(s) 83, 139, 809, 895
CviAII CATG 4 cut(s) 303, 342, 656, 826
CviQI GTAC 4 cut(s) 83, 139, 809, 895
DdeI CTNAG 2 cut(s) 316, 768
DpnI GATC 5 cut(s) 9, 432, 630, 741, 938
DpnII GATC 5 cut(s) 7, 430, 628, 739, 936
DrdI GACNNNNNNGTC 1 cut(s) 29
DseDI GACNNNNNNGTC 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco130I CCWWGG 3 cut(s) 91, 215, 844
Eco147I AGGCCT 1 cut(s) 1015
Eco24I GRGCYC 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 375
Eco47I GGWCC 4 cut(s) 22, 31, 180, 322
Eco57I CTGAAG 1 cut(s) 1116
Eco88I CYCGRG 1 cut(s) 375
EcoO109I RGGNCCY 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 763
EcoRII CCWGG 2 cut(s) 587, 1040
EcoT14I CCWWGG 3 cut(s) 91, 215, 844
EcoT38I GRGCYC 1 cut(s) 498
ErhI CCWWGG 3 cut(s) 91, 215, 844
FaeI CATG 4 cut(s) 306, 345, 659, 829
FalI AAGNNNNNCTT 4 cut(s) 299, 331, 588, 620
FaqI GGGAC 3 cut(s) 17, 352, 683
FatI CATG 4 cut(s) 302, 341, 655, 825
FauNDI CATATG 2 cut(s) 70, 1174
FbaI TGATCA 1 cut(s) 739
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 1 cut(s) 785
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 1 cut(s) 287
GlaI GCGC 1 cut(s) 992
GluI GCNGC 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 994
HaeIII GGCC 2 cut(s) 1015, 1046
HapII CCGG 3 cut(s) 151, 852, 977
HhaI GCGC 1 cut(s) 993
Hin1II CATG 4 cut(s) 306, 345, 659, 829
Hin6I GCGC 1 cut(s) 991
HinP1I GCGC 1 cut(s) 991
HincII GTYRAC 2 cut(s) 76, 1219
HindII GTYRAC 2 cut(s) 76, 1219
HinfI GANTC 6 cut(s) 368, 412, 466, 539, 1166, 1181
HpaI GTTAAC 1 cut(s) 76
HpaII CCGG 3 cut(s) 151, 852, 977
Hpy166II GTNNAC 4 cut(s) 76, 401, 1038, 1219
Hpy188I TCNGA 5 cut(s) 417, 769, 1005, 1027, 1186
Hpy188III TCNNGA 6 cut(s) 115, 353, 409, 470, 737, 1163
Hpy8I GTNNAC 4 cut(s) 76, 401, 1038, 1219
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 3 cut(s) 22, 542, 1140
HpyCH4III ACNGT 3 cut(s) 823, 1035, 1151
HpyCH4IV ACGT 4 cut(s) 81, 358, 613, 684
HpyCH4V TGCA 7 cut(s) 230, 306, 441, 450, 618, 959, 1178
HpyF10VI GCNNNNNNNGC 2 cut(s) 447, 502
HpyF3I CTNAG 2 cut(s) 316, 768
HpySE526I ACGT 4 cut(s) 81, 358, 613, 684
Hsp92II CATG 4 cut(s) 306, 345, 659, 829
HspAI GCGC 1 cut(s) 991
Ksp22I TGATCA 1 cut(s) 739
KspAI GTTAAC 1 cut(s) 76
KspI CCGCGG 1 cut(s) 464
Kzo9I GATC 5 cut(s) 7, 430, 628, 739, 936
LmnI GCTCC 5 cut(s) 45, 273, 501, 558, 703
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 3 cut(s) 685, 946, 1177
MaeII ACGT 4 cut(s) 81, 358, 613, 684
MaeIII GTNAC 7 cut(s) 247, 296, 359, 389, 728, 886, 1151
MalI GATC 5 cut(s) 9, 432, 630, 741, 938
MboI GATC 5 cut(s) 7, 430, 628, 739, 936
MboII GAAGA 4 cut(s) 232, 772, 886, 992
MflI RGATCY 3 cut(s) 7, 430, 628
MhlI GDGCHC 4 cut(s) 122, 278, 498, 868
MluCI AATT 6 cut(s) 422, 763, 779, 859, 1084, 1202
MlyI GAGTC 2 cut(s) 460, 1175
MmeI TCCRAC 3 cut(s) 440, 498, 536
MseI TTAA 3 cut(s) 75, 606, 1052
MslI CAYNNNNRTG 2 cut(s) 824, 977
MspA1I CMGCKG 2 cut(s) 108, 463
MspI CCGG 3 cut(s) 151, 852, 977
MspR9I CCNGG 3 cut(s) 152, 589, 1042
Mva1269I GAATGC 1 cut(s) 972
MvaI CCWGG 2 cut(s) 589, 1042
MvnI CGCG 2 cut(s) 463, 471
MwoI GCNNNNNNNGC 2 cut(s) 447, 502
NciI CCSGG 1 cut(s) 152
NdeI CATATG 2 cut(s) 70, 1174
NdeII GATC 5 cut(s) 7, 430, 628, 739, 936
NlaIII CATG 4 cut(s) 306, 345, 659, 829
NlaIV GGNNCC 5 cut(s) 33, 497, 560, 651, 850
NmuCI GTSAC 5 cut(s) 247, 296, 359, 389, 886
NruI TCGCGA 1 cut(s) 471
NspI RCATGY 2 cut(s) 306, 345
PaeR7I CTCGAG 1 cut(s) 375
PceI AGGCCT 1 cut(s) 1015
PcsI WCGNNNNNNNCGW 1 cut(s) 690
PctI GAATGC 1 cut(s) 972
PfeI GAWTC 4 cut(s) 368, 412, 539, 1166
PflMI CCANNNNNTGG 2 cut(s) 331, 659
PkrI GCNGC 1 cut(s) 288
PleI GAGTC 2 cut(s) 460, 1175
PpsI GAGTC 2 cut(s) 460, 1175
Ppu21I YACGTR 1 cut(s) 685
PpuMI RGGWCCY 1 cut(s) 31
Psp1406I AACGTT 1 cut(s) 613
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 2 cut(s) 587, 1040
PspGI CCWGG 2 cut(s) 587, 1040
PspN4I GGNNCC 5 cut(s) 33, 497, 560, 651, 850
PspPI GGNCC 5 cut(s) 22, 31, 180, 322, 1044
PspPPI RGGWCCY 1 cut(s) 31
PspXI VCTCGAGB 1 cut(s) 375
PstNI CAGNNNCTG 1 cut(s) 1184
PsuI RGATCY 3 cut(s) 7, 430, 628
PvuII CAGCTG 1 cut(s) 108
RruI TCGCGA 1 cut(s) 471
RsaI GTAC 4 cut(s) 84, 140, 810, 896
RsaNI GTAC 4 cut(s) 83, 139, 809, 895
RseI CAYNNNNRTG 2 cut(s) 824, 977
SacII CCGCGG 1 cut(s) 464
SaqAI TTAA 3 cut(s) 75, 606, 1052
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 5 cut(s) 7, 430, 628, 739, 936
Sau96I GGNCC 5 cut(s) 22, 31, 180, 322, 1044
ScaI AGTACT 1 cut(s) 896
SchI GAGTC 2 cut(s) 460, 1175
ScrFI CCNGG 3 cut(s) 152, 589, 1042
SduI GDGCHC 4 cut(s) 122, 278, 498, 868
SfaNI GCATC 3 cut(s) 685, 946, 1177
Sfr274I CTCGAG 1 cut(s) 375
Sfr303I CCGCGG 1 cut(s) 464
SgrBI CCGCGG 1 cut(s) 464
SinI GGWCC 4 cut(s) 22, 31, 180, 322
SlaI CTCGAG 1 cut(s) 375
SmiMI CAYNNNNRTG 2 cut(s) 824, 977
SmlI CTYRAG 5 cut(s) 115, 351, 375, 506, 632
SmoI CTYRAG 5 cut(s) 115, 351, 375, 506, 632
Sse9I AATT 6 cut(s) 422, 763, 779, 859, 1084, 1202
SseBI AGGCCT 1 cut(s) 1015
SsiI CCGC 5 cut(s) 320, 461, 463, 569, 837
StuI AGGCCT 1 cut(s) 1015
StyD4I CCNGG 3 cut(s) 150, 587, 1040
StyI CCWWGG 3 cut(s) 91, 215, 844
TaaI ACNGT 3 cut(s) 823, 1035, 1151
TaiI ACGT 4 cut(s) 84, 361, 616, 687
TaqI TCGA 3 cut(s) 376, 693, 777
TaqII GACCGA 1 cut(s) 197
TasI AATT 6 cut(s) 422, 763, 779, 859, 1084, 1202
TatI WGTACW 1 cut(s) 894
TfiI GAWTC 4 cut(s) 368, 412, 539, 1166
Tru1I TTAA 3 cut(s) 75, 606, 1052
Tru9I TTAA 3 cut(s) 75, 606, 1052
TscAI CASTG 8 cut(s) 64, 127, 392, 549, 749, 873, 889, 1038
TseFI GTSAC 5 cut(s) 247, 296, 359, 389, 886
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 5 cut(s) 247, 296, 359, 389, 886
TspDTI ATGAA 2 cut(s) 887, 1087
TspGWI ACGGA 3 cut(s) 218, 905, 1155
TspRI CASTG 8 cut(s) 64, 127, 392, 549, 749, 873, 889, 1038
Van91I CCANNNNNTGG 2 cut(s) 331, 659
VpaK11BI GGWCC 4 cut(s) 22, 31, 180, 322
XapI RAATTY 2 cut(s) 763, 1084
XceI RCATGY 2 cut(s) 306, 345
XhoI CTCGAG 1 cut(s) 375
ZrmI AGTACT 1 cut(s) 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.