RchiOBHm_Chr3g0449681

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011124
Physical Location & Seq
Forward (+)
1375877 .. 1376227
351 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
ATGTTTTCTCATTGTTGGCCTCCTCACACCGCTCCTTCCATGGGTGATTTGGACCCTGCTACAGCAAAGCTGGCCATTGCGTTTCTAGGACCCTTTCTGGCTCTATTTTCGTTTCTCTTCGTTGTAAGAATAGTGATGTCCTGGTACCCAAAGATTCCTGTGGGGAAGTTCCCATATGTTTTGGCTTACGCTCCCGCAGAGCCAATTCTCATCCCAACCAGAAAGTTGATCCCAACTTTAGGGGGTGTGGACGTAACCCCTGTGGTCTGGTTTGGATTGATTAGTTTCCTGAATGAGATATTAATAGGTCCACAAGGGCTACTTGTGCTTCTATCTCAAAGAGTAAACTGA

Protein Analysis

116

Amino Acids

12.75

Weight (kDa)

8.93

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 32 - 101 5.7e-16 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 144
AccBSI CCGCTC 1 cut(s) 32
AciI CCGC 2 cut(s) 30, 195
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 72
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 2 cut(s) 41, 239
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
AlwI GGATC 1 cut(s) 223
AoxI GGCC 2 cut(s) 17, 72
AseI ATTAAT 1 cut(s) 302
Asp718I GGTACC 1 cut(s) 144
AspS9I GGNCC 3 cut(s) 52, 89, 308
AsuHPI GGTGA 1 cut(s) 56
AvaII GGWCC 3 cut(s) 52, 89, 308
BalI TGGCCA 1 cut(s) 74
BanI GGYRCC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 142
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 3 cut(s) 52, 89, 308
BmgT120I GGNCC 3 cut(s) 52, 89, 308
BmiI GGNNCC 3 cut(s) 54, 91, 146
BmrFI CCNGG 1 cut(s) 142
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 239
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 41, 239
BseMI GCAATG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 12
BshFI GGCC 2 cut(s) 19, 74
BshNI GGYRCC 1 cut(s) 144
BslI CCNNNNNNNGG 2 cut(s) 41, 239
BsnI GGCC 2 cut(s) 19, 74
Bsp143I GATC 1 cut(s) 228
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 2 cut(s) 30, 195
BspANI GGCC 2 cut(s) 19, 74
BspLI GGNNCC 3 cut(s) 54, 91, 146
BspPI GGATC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 144
BsrBI CCGCTC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 72
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 2 cut(s) 71, 325
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 60
BsuRI GGCC 2 cut(s) 19, 74
BtgI CCRYGG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 72
Cfr13I GGNCC 3 cut(s) 52, 89, 308
Csp6I GTAC 1 cut(s) 145
CviAII CATG 1 cut(s) 40
CviJI RGCY 7 cut(s) 19, 70, 74, 101, 185, 202, 319
CviKI_1 RGCY 7 cut(s) 19, 70, 74, 101, 185, 202, 319
CviQI GTAC 1 cut(s) 145
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 3 cut(s) 52, 89, 308
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 43
FaiI YATR 3 cut(s) 41, 175, 177
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FatI CATG 1 cut(s) 39
FauI CCCGC 1 cut(s) 202
FauNDI CATATG 1 cut(s) 175
FokI GGATG 1 cut(s) 197
FspBI CTAG 1 cut(s) 86
HaeIII GGCC 2 cut(s) 19, 74
Hin1II CATG 1 cut(s) 43
HinfI GANTC 1 cut(s) 154
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 3 cut(s) 250, 311, 346
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 3 cut(s) 250, 311, 346
HpyAV CCTTC 1 cut(s) 45
HpyCH4IV ACGT 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 325
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 1 cut(s) 43
KpnI GGTACC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 2 cut(s) 37, 196
MaeI CTAG 1 cut(s) 86
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 230
MbiI CCGCTC 1 cut(s) 32
MboI GATC 1 cut(s) 228
MboII GAAGA 1 cut(s) 109
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 1 cut(s) 204
MluNI TGGCCA 1 cut(s) 74
MnlI CCTC 2 cut(s) 30, 33
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
MseI TTAA 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 2 cut(s) 71, 325
NcoI CCATGG 1 cut(s) 39
NdeI CATATG 1 cut(s) 175
NdeII GATC 1 cut(s) 228
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 3 cut(s) 54, 91, 146
PfeI GAWTC 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 89
PshBI ATTAAT 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 54, 91, 146
PspPI GGNCC 3 cut(s) 52, 89, 308
PspPPI RGGWCCY 1 cut(s) 89
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 302
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 3 cut(s) 52, 89, 308
ScrFI CCNGG 1 cut(s) 142
SetI ASST 3 cut(s) 72, 255, 310
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 3 cut(s) 52, 89, 308
Sse9I AATT 1 cut(s) 204
SsiI CCGC 2 cut(s) 30, 195
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 39
TaiI ACGT 1 cut(s) 255
TasI AATT 1 cut(s) 204
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
VpaK11BI GGWCC 3 cut(s) 52, 89, 308
VspI ATTAAT 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.