Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016869

Physical Location & Seq

Genomic Coordinates Forward (+)

4133253 .. 4134291

Gene Structure 1039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTGAACCGTTTGTTCAACACATAAACTCATCGTCATCAACACCAGTAGCAAACTCTGCGGCGGCCGCCTCATTAGTCCGGTCAATGGCAGATCAACAGATTGTGTTACAAATTGGACAACTATCAAGTTCAACACCACCACTACCACCACCTCATGATGAACAAACTAAATCAGTAGCACCAGCATCACACCATGGTACCTTAAACCTCAGGGTAACTGAGCCGATTTTGCTACACATAAACTCGTTAACACCACTTCTCAATAACCAACCAATTAGTACTCAATCAACACCAACACCAACACCACCACCACCACCACCACCACCAAAAAACCAAGTAACCTCTAATCCACCGACTGATATTGCACAATCTTTGAAAGGCACAAAGCACCAAAAGGCACTTAGCAAGATGGGAAGCCTGGCAAACCTGTTACCCACAGGCACTGTTCTTGCATTCCAAGCCATCACGCCTTCCCTTTCCTACAACGGTAGATGCCACATCTTCAACAAGTACCTTGTTGCATTCGTCATGCTGGCTTGCTCTCTCGTTTGCTTCGTCTCTTCCTTCACCGACAGCCTAGAATATGAGCAGAAAGTGTACTATGGCATTGCAACATTCAACGGGCTTTCAGTTTTCAACTATGAACGTCGTGAGGTTGAAGAAAAAGCTCTTGAGGATAAGCTGAAGTCGCTGAAGATTACACCCAGGGACTATCTTCATGCGTTTCTCTCGGTTTTTGTGTTCCTGATATTTGCTTGTAGCAGCTTAGAGGTGCAGACCTGCTACTTTCCGGCTGGAATAAGAGATCAGTTGGAGTATTCGATGGTGATATATTTGCCTTTGGTCGTTGGATTGCTGTCAAGTTTCTTGTTCACCCATTTCCCTACTAACCGTAGAGGGATTGGCTACACATGCACCAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0008150 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

309

Amino Acids

33.9

Weight (kDa)

8.48

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	137 - 304	2.9e-52	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05190
malus_domestica	MD04G1047900.v1.1
prunus_persica	Prupe.1G204900_v2.0.a1 Prupe.1G205000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0453841
rosa_laevigata	RLG00000025498
rosa_multiflora	Rmu_sc0003556.1_g000012
rosa_roxburghii	Rroxscaffold_6G00430670
rosa_rugosa	Rorug02G0651600
rosa_samantha	Rh3AG054000 Rh3BG055400 Rh3CG054700 Rh3DG056000
rosa_wichuraiana	Rw3G004150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	791
Acc65I	GGTACC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	3 cut(s)	62, 65, 69
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	2 cut(s)	707, 716
AfaI	GTAC	4 cut(s)	202, 283, 515, 602
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	7 cut(s)	20, 135, 379, 508, 622, 640, 662
AjnI	CCWGG	2 cut(s)	420, 707
AluBI	AGCT	3 cut(s)	671, 685, 768
AluI	AGCT	3 cut(s)	671, 685, 768
Alw26I	GTCTC	1 cut(s)	565
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	765
Asp718I	GGTACC	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	562, 841, 868
AxyI	CCTNAGG	1 cut(s)	212
BaeI	ACNNNNGTAYC	2 cut(s)	184, 217
BanI	GGYRCC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	777
BccI	CCATC	3 cut(s)	406, 473, 820
BciT130I	CCWGG	2 cut(s)	422, 709
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	1 cut(s)	581
BfuAI	ACCTGC	1 cut(s)	791
BisI	GCNGC	4 cut(s)	63, 66, 69, 766
BlsI	GCNGC	4 cut(s)	64, 67, 70, 767
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	2 cut(s)	422, 709
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	422, 709
BmsI	GCATC	2 cut(s)	197, 485
BpuEI	CTTGAG	1 cut(s)	695
BsaJI	CCNNGG	3 cut(s)	196, 707, 708
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	47
Bse21I	CCTNAGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	422, 709
BseDI	CCNNGG	3 cut(s)	196, 707, 708
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	2 cut(s)	213, 226
BseNI	ACTGG	1 cut(s)	47
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	777
BsgI	GTGCAG	1 cut(s)	797
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	200
BsiEI	CGRYCG	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	82, 794
BslFI	GGGAC	1 cut(s)	725
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	565
BsmBI	CGTCTC	1 cut(s)	565
BsmFI	GGGAC	1 cut(s)	725
BsmI	GAATGC	2 cut(s)	455, 524
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	94, 808
Bsp19I	CCATGG	1 cut(s)	196
BspACI	CCGC	3 cut(s)	62, 65, 69
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	2 cut(s)	214, 225
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	791
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	3 cut(s)	196, 707, 708
BssMI	GATC	2 cut(s)	94, 808
BssT1I	CCWWGG	1 cut(s)	196
Bst2UI	CCWGG	2 cut(s)	422, 709
Bst4CI	ACNGT	4 cut(s)	12, 448, 491, 896
Bst6I	CTCTTC	1 cut(s)	568
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	537, 541
BstDEI	CTNAG	4 cut(s)	212, 222, 404, 769
BstDSI	CCRYGG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	97, 811
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	2 cut(s)	94, 808
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 68, 232, 461, 691, 915
BstNI	CCWGG	2 cut(s)	422, 709
BstNSI	RCATGY	1 cut(s)	918
BstSCI	CCNGG	2 cut(s)	420, 707
BstV1I	GCAGC	1 cut(s)	777
BstZI	CGGCCG	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	444
BveI	ACCTGC	1 cut(s)	791
Cac8I	GCNNGC	2 cut(s)	537, 541
CaiI	CAGNNNCTG	1 cut(s)	446
CciI	TCATGA	1 cut(s)	157
CciNI	GCGGCCGC	1 cut(s)	66
Csp6I	GTAC	4 cut(s)	201, 282, 514, 601
CviAII	CATG	6 cut(s)	158, 197, 532, 722, 915, 927
CviQI	GTAC	4 cut(s)	201, 282, 514, 601
DdeI	CTNAG	4 cut(s)	212, 222, 404, 769
DpnI	GATC	2 cut(s)	96, 810
DpnII	GATC	2 cut(s)	94, 808
EaeI	YGGCCR	1 cut(s)	66
EagI	CGGCCG	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	568
EarI	CTCTTC	1 cut(s)	568
EclXI	CGGCCG	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	196
Eco52I	CGGCCG	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	707, 716
Eco81I	CCTNAGG	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	420, 707
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	565
FaeI	CATG	6 cut(s)	161, 200, 535, 725, 918, 930
FaqI	GGGAC	1 cut(s)	725
FatI	CATG	6 cut(s)	157, 196, 531, 721, 914, 926
Fnu4HI	GCNGC	4 cut(s)	63, 66, 69, 766
Fsp4HI	GCNGC	4 cut(s)	63, 66, 69, 766
FspBI	CTAG	1 cut(s)	581
GluI	GCNGC	4 cut(s)	63, 66, 69, 766
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	2 cut(s)	82, 794
Hin1II	CATG	6 cut(s)	161, 200, 535, 725, 918, 930
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HpaI	GTTAAC	1 cut(s)	252
HpaII	CCGG	2 cut(s)	82, 794
HphI	GGTGA	3 cut(s)	562, 841, 868
Hpy166II	GTNNAC	3 cut(s)	252, 601, 876
Hpy188III	TCNNGA	4 cut(s)	158, 653, 674, 748
Hpy8I	GTNNAC	3 cut(s)	252, 601, 876
Hpy99I	CGWCG	1 cut(s)	654
HpyAV	CCTTC	2 cut(s)	483, 577
HpyCH4III	ACNGT	4 cut(s)	12, 448, 491, 896
HpyCH4IV	ACGT	1 cut(s)	649
HpyCH4V	TGCA	6 cut(s)	368, 455, 524, 614, 778, 918
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 68, 232, 461, 691, 915
HpyF3I	CTNAG	4 cut(s)	212, 222, 404, 769
HpySE526I	ACGT	1 cut(s)	649
Hsp92II	CATG	6 cut(s)	161, 200, 535, 725, 918, 930
KpnI	GGTACC	1 cut(s)	204
KspAI	GTTAAC	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	94, 808
Lsp1109I	GCAGC	1 cut(s)	777
LweI	GCATC	2 cut(s)	197, 485
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	1 cut(s)	649
MaeIII	GTNAC	4 cut(s)	108, 217, 340, 432
MalI	GATC	2 cut(s)	96, 810
MboI	GATC	2 cut(s)	94, 808
MboII	GAAGA	5 cut(s)	496, 555, 674, 709, 710
MluCI	AATT	2 cut(s)	114, 276
MmeI	TCCRAC	2 cut(s)	795, 832
MnlI	CCTC	8 cut(s)	82, 165, 221, 355, 649, 670, 766, 893
MseI	TTAA	2 cut(s)	206, 251
MspI	CCGG	2 cut(s)	82, 794
MspR9I	CCNGG	2 cut(s)	422, 709
Mva1269I	GAATGC	2 cut(s)	455, 524
MvaI	CCWGG	2 cut(s)	422, 709
MwoI	GCNNNNNNNGC	6 cut(s)	59, 68, 232, 461, 691, 915
NcoI	CCATGG	1 cut(s)	196
NdeII	GATC	2 cut(s)	94, 808
NlaIII	CATG	6 cut(s)	161, 200, 535, 725, 918, 930
NlaIV	GGNNCC	1 cut(s)	202
NotI	GCGGCCGC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	918
PagI	TCATGA	1 cut(s)	157
PasI	CCCWGGG	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	1 cut(s)	555
PctI	GAATGC	2 cut(s)	455, 524
PkrI	GCNGC	4 cut(s)	64, 67, 70, 767
Psp6I	CCWGG	2 cut(s)	420, 707
PspGI	CCWGG	2 cut(s)	420, 707
PspN4I	GGNNCC	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	446
RsaI	GTAC	4 cut(s)	202, 283, 515, 602
RsaNI	GTAC	4 cut(s)	201, 282, 514, 601
SaqAI	TTAA	2 cut(s)	206, 251
SatI	GCNGC	4 cut(s)	63, 66, 69, 766
Sau3AI	GATC	2 cut(s)	94, 808
ScaI	AGTACT	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	422, 709
SfaNI	GCATC	2 cut(s)	197, 485
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	2 cut(s)	114, 276
SsiI	CCGC	3 cut(s)	62, 65, 69
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	2 cut(s)	420, 707
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	4 cut(s)	12, 448, 491, 896
TaiI	ACGT	1 cut(s)	652
TaqI	TCGA	1 cut(s)	824
TasI	AATT	2 cut(s)	114, 276
TatI	WGTACW	2 cut(s)	281, 600
TauI	GCSGC	3 cut(s)	65, 68, 71
Tru1I	TTAA	2 cut(s)	206, 251
Tru9I	TTAA	2 cut(s)	206, 251
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	1 cut(s)	765
TspDTI	ATGAA	3 cut(s)	177, 660, 710
TspRI	CASTG	1 cut(s)	451
XceI	RCATGY	1 cut(s)	918
XspI	CTAG	1 cut(s)	581
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.