RchiOBHm_Chr3g0460751

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017685
Physical Location & Seq
Reverse (-)
8733944 .. 8735214
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 579 bp
ATGTATGTACTCCCGCTTGCTTTTACAATGTTTCTCAGTGGAAGTGAGTATGTTCCATCGGAGTGGGAAGATGAATTGCTTTTAACAGATGATACTTTCCTTGGAGATGGATTTGGTGTTGGGATTGATGGAGATGAGGGTATGTCCAACAATCTTAATACCACTTCTTGCAATACTGAAGATAGAAGCGGTATTGCTAGTTCTTCTTCAAAACCATCAAAAGCCAAAATGTTGTCCCAAGAAACCATATCCGAATACTTTTACATGCCGATAACTAGAGCAGCTGAAGAAATGAATGTCTCTGTAACAACTCTTAAGAAAAGGTGTCGAGAGTTGGGTATTCATCGTTGGCCTTGCCGAAAGTTGAACAGTGTAAAGAACCTAGAAGAAAGCATTCAGATATCATACATGCAGGAGTTTGGGAAGAAGGAAGAAGAGTTGGAGTTTTTGGAGAAAGAGAGGAAAATGATTGAGCAAGTTCCCGATTTGCAGCTCGAGGAAAAGACGAAGCGGCTCAGGCATGCTTATTTTAAGGCCAAAAGTTGCGGAAATTATTCTATGCACCGACGGTGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

192

Amino Acids

22.14

Weight (kDa)

5.57

Isoelectric Point (pI)

68.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 78 - 125 7.3e-21 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10050
rosa_chinensis RchiOBHm_Chr3g0460751
rosa_laevigata RLG00000024984
rosa_roxburghii Rroxscaffold_6G00419250
rosa_rugosa Rorug03G0045800 Rorug03G0045900 Rorug03G0045900
rosa_samantha Rh3AG103200 Rh3BG106800 Rh3CG108700 Rh3DG108400
rosa_wichuraiana Rw3G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 14, 189, 511, 546
AcuI CTGAAG 2 cut(s) 198, 306
AfaI GTAC 1 cut(s) 9
AflII CTTAAG 1 cut(s) 314
AgsI TTSAA 2 cut(s) 210, 367
AluBI AGCT 2 cut(s) 284, 493
AluI AGCT 2 cut(s) 284, 493
Alw26I GTCTC 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 2 cut(s) 350, 534
ApeKI GCWGC 2 cut(s) 281, 490
Asp700I GAANNNNTTC 2 cut(s) 393, 553
AvaI CYCGRG 1 cut(s) 494
BbvI GCAGC 2 cut(s) 293, 502
BccI CCATC 4 cut(s) 64, 101, 122, 223
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 3 cut(s) 198, 276, 383
BfrI CTTAAG 1 cut(s) 314
BisI GCNGC 3 cut(s) 282, 491, 512
BlsI GCNGC 3 cut(s) 283, 492, 513
BmeT110I CYCGRG 1 cut(s) 494
Bpu10I CCTNAGC 1 cut(s) 515
BsaJI CCNNGG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 49, 529
BseXI GCAGC 2 cut(s) 293, 502
BshFI GGCC 2 cut(s) 352, 536
BsiHKCI CYCGRG 1 cut(s) 494
BslFI GGGAC 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 220
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 2 cut(s) 352, 536
BsoBI CYCGRG 1 cut(s) 494
BspACI CCGC 4 cut(s) 14, 189, 511, 546
BspANI GGCC 2 cut(s) 352, 536
BspCNI CTCAG 2 cut(s) 48, 528
BspTI CTTAAG 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 371, 570
Bst6I CTCTTC 1 cut(s) 429
BstAFI CTTAAG 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 18, 522
BstDEI CTNAG 2 cut(s) 35, 515
BstMAI GTCTC 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 517
BstNSI RCATGY 3 cut(s) 268, 412, 524
BstV1I GCAGC 2 cut(s) 293, 502
BstXI CCANNNNNNTGG 1 cut(s) 63
BsuRI GGCC 2 cut(s) 352, 536
BtsIMutI CAGTG 2 cut(s) 43, 376
Cac8I GCNNGC 2 cut(s) 18, 522
Csp6I GTAC 1 cut(s) 8
CviAII CATG 3 cut(s) 265, 409, 521
CviJI RGCY 6 cut(s) 224, 284, 352, 493, 514, 536
CviKI_1 RGCY 6 cut(s) 224, 284, 352, 493, 514, 536
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 2 cut(s) 35, 515
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 100
Eco32I GATATC 1 cut(s) 402
Eco57I CTGAAG 2 cut(s) 198, 306
Eco88I CYCGRG 1 cut(s) 494
EcoRV GATATC 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 3 cut(s) 268, 412, 524
FaiI YATR 9 cut(s) 6, 51, 143, 248, 266, 406, 410, 522, 560
FaqI GGGAC 1 cut(s) 220
FatI CATG 3 cut(s) 264, 408, 520
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 282, 491, 512
Fsp4HI GCNGC 3 cut(s) 282, 491, 512
FspBI CTAG 3 cut(s) 198, 276, 383
GluI GCNGC 3 cut(s) 282, 491, 512
HaeIII GGCC 2 cut(s) 352, 536
Hin1II CATG 3 cut(s) 268, 412, 524
Hpy188I TCNGA 3 cut(s) 61, 253, 399
Hpy188III TCNNGA 2 cut(s) 329, 482
Hpy99I CGWCG 1 cut(s) 570
HpyAV CCTTC 1 cut(s) 421
HpyCH4III ACNGT 2 cut(s) 371, 570
HpyCH4V TGCA 5 cut(s) 171, 412, 490, 562, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 517
HpyF3I CTNAG 2 cut(s) 35, 515
Hsp92II CATG 3 cut(s) 268, 412, 524
LpnPI CCDG 2 cut(s) 398, 502
Lsp1109I GCAGC 2 cut(s) 293, 502
MaeI CTAG 3 cut(s) 198, 276, 383
MaeIII GTNAC 1 cut(s) 304
MboII GAAGA 9 cut(s) 80, 191, 195, 198, 299, 398, 436, 443, 446
MluCI AATT 2 cut(s) 74, 550
MmeI TCCRAC 2 cut(s) 171, 420
MnlI CCTC 3 cut(s) 130, 453, 490
MroXI GAANNNNTTC 2 cut(s) 393, 553
MseI TTAA 4 cut(s) 83, 156, 315, 531
MslI CAYNNNNRTG 1 cut(s) 61
MspA1I CMGCKG 1 cut(s) 284
MspCI CTTAAG 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 393
MwoI GCNNNNNNNGC 1 cut(s) 517
NlaIII CATG 3 cut(s) 268, 412, 524
NspI RCATGY 3 cut(s) 268, 412, 524
PaeI GCATGC 1 cut(s) 524
PaeR7I CTCGAG 1 cut(s) 494
PctI GAATGC 1 cut(s) 393
PdmI GAANNNNTTC 2 cut(s) 393, 553
PkrI GCNGC 3 cut(s) 283, 492, 513
PspXI VCTCGAGB 1 cut(s) 494
PsrI GAACNNNNNNTAC 2 cut(s) 184, 216
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 61
SaqAI TTAA 4 cut(s) 83, 156, 315, 531
SatI GCNGC 3 cut(s) 282, 491, 512
SetI ASST 4 cut(s) 286, 326, 384, 495
Sfr274I CTCGAG 1 cut(s) 494
SlaI CTCGAG 1 cut(s) 494
SmiMI CAYNNNNRTG 1 cut(s) 61
SmlI CTYRAG 2 cut(s) 314, 494
SmoI CTYRAG 2 cut(s) 314, 494
SphI GCATGC 1 cut(s) 524
Sse9I AATT 2 cut(s) 74, 550
SsiI CCGC 4 cut(s) 14, 189, 511, 546
SspMI CTAG 3 cut(s) 198, 276, 383
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 2 cut(s) 371, 570
TaqI TCGA 2 cut(s) 328, 495
TasI AATT 2 cut(s) 74, 550
TatI WGTACW 1 cut(s) 7
TauI GCSGC 1 cut(s) 514
Tru1I TTAA 4 cut(s) 83, 156, 315, 531
Tru9I TTAA 4 cut(s) 83, 156, 315, 531
TscAI CASTG 2 cut(s) 43, 376
TseI GCWGC 2 cut(s) 281, 490
TspDTI ATGAA 3 cut(s) 87, 308, 332
TspRI CASTG 2 cut(s) 43, 376
Vha464I CTTAAG 1 cut(s) 314
XceI RCATGY 3 cut(s) 268, 412, 524
XhoI CTCGAG 1 cut(s) 494
XmnI GAANNNNTTC 2 cut(s) 393, 553
XspI CTAG 3 cut(s) 198, 276, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.