Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014131

Physical Location & Seq

Genomic Coordinates Forward (+)

10114223 .. 10115213

Gene Structure 991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACGACATCTCATTCACTCATTCAAAATCATCCAAATAAAAATACAAAATTAATACAAAATCTATATCCGTTTGCATTCTTCATCTCCCTCTATATATATCATAGGACTGTCCCCATAACAGTTAACCCCTATCAAGTTGAGCCAAATAAGCTAGGTTTGTTTGCAAAGATGGAGTACTATTTCCCAGCTAGCTCAGATGGTTCCAATTTCTCTTCTTCCTCAGTGATCACCAACACCAACACCAACAACATCAACATCAATGGCGGGCGCAACAAAGACAAAATGAAGAAGGGTACTAGTGGTAATGATCAGAAGAGCAAGAACAAAGTGAAGCTGTCGACAGACCCACAAAGCGTGGCGGCGAGGGAGAGGAGGCACCGCATCAGCGAAAGGTTCAAGATCCTGCAGAGCCTGGTCCCCGGTGGAACCAAGCTGGACACTGTGTCCATGCTGGAGGAAGCCATTCAGTACGTGAAGTTCTTGAAGAGTCAGATATGGCTTCACCAGACCATGATCAACTTTGCGGGAGATGATGATAATCAGTACTACGATCACGACCCTACATCTGGAAATGTGTTCCAGCTTCCGGTTCATCACGGCCAACCAGTTGATCCTCCTCATCAGCAGGCTTTGTGCTATGGACAGAATAGTTTCGTGGGTACTAGTTCGGTGCAGCCATCGGTTCCAGTAATGCCGGAATATTCTTGCTTCCAAGGTCAAGAAGCTACGCCTAACATTGAAGCCTATATGAAGTATTATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:1900618 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

255

Amino Acids

28.84

Weight (kDa)

8.88

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	122 - 163	1.2e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	124 - 165	1.3e-09	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01305
fragaria_vesca	FvH4_6g11070
malus_domestica	MD04G1161800.v1.1 MD12G1174500.v1.1
prunus_persica	Prupe.6G281600_v2.0.a1
pyrus_communis	pycom04g14470
rosa_chinensis	RchiOBHm_Chr3g0462431
rosa_laevigata	RLG00000024861
rosa_multiflora	Rmu_co8365921.1_g000001 Rmu_sc0003850.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417520
rosa_rugosa	Rorug03G0056500
rosa_samantha	Rh3AG114900 Rh3BG118300 Rh3CG121100 Rh3DG120300
rosa_wichuraiana	Rw3G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	378
AccI	GTMKAC	1 cut(s)	341
AciI	CCGC	4 cut(s)	267, 362, 382, 527
AclWI	GGATC	2 cut(s)	397, 608
AcoI	YGGCCR	1 cut(s)	601
AfaI	GTAC	5 cut(s)	179, 298, 473, 548, 664
AfiI	CCNNNNNNNGG	2 cut(s)	569, 589
AgsI	TTSAA	4 cut(s)	26, 400, 487, 743
AhdI	GACNNNNNGTC	1 cut(s)	445
AhlI	ACTAGT	2 cut(s)	299, 665
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	8 cut(s)	154, 191, 195, 337, 436, 586, 728, 765
AluI	AGCT	8 cut(s)	154, 191, 195, 337, 436, 586, 728, 765
AlwI	GGATC	2 cut(s)	397, 608
AlwNI	CAGNNNCTG	1 cut(s)	415
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	1 cut(s)	676
AseI	ATTAAT	1 cut(s)	53
Asp700I	GAANNNNTTC	2 cut(s)	465, 653
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	418
AsuC2I	CCSGG	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	223, 497
AsuNHI	GCTAGC	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	688
BccI	CCATC	3 cut(s)	166, 194, 688
BceAI	ACGGC	1 cut(s)	616
BciT130I	CCWGG	1 cut(s)	416
BclI	TGATCA	3 cut(s)	228, 310, 516
BcnI	CCSGG	1 cut(s)	423
BcuI	ACTAGT	2 cut(s)	299, 665
BfaI	CTAG	5 cut(s)	155, 192, 300, 666, 766
BfmI	CTRYAG	1 cut(s)	407
BisI	GCNGC	2 cut(s)	363, 677
BlsI	GCNGC	2 cut(s)	364, 678
BmcAI	AGTACT	2 cut(s)	179, 548
Bme1390I	CCNGG	2 cut(s)	416, 423
Bme18I	GGWCC	1 cut(s)	418
BmeRI	GACNNNNNGTC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	5 cut(s)	205, 380, 420, 430, 687
BmrFI	CCNGG	2 cut(s)	416, 423
BmsI	GCATC	1 cut(s)	393
BmtI	GCTAGC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	423
BsaAI	YACGTR	1 cut(s)	475
BsaBI	GATNNNNATC	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	421, 715
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	2 cut(s)	569, 589
Bse1I	ACTGG	2 cut(s)	608, 689
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	2 cut(s)	421, 715
BseGI	GGATG	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	2 cut(s)	569, 589
BseMII	CTCAG	2 cut(s)	210, 237
BseNI	ACTGG	2 cut(s)	608, 689
BseRI	GAGGAG	2 cut(s)	388, 609
BseXI	GCAGC	1 cut(s)	688
BseYI	CCCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	695
BshFI	GGCC	1 cut(s)	603
BshNI	GGYRCC	1 cut(s)	378
BsiSI	CCGG	3 cut(s)	423, 590, 698
BslFI	GGGAC	2 cut(s)	98, 404
BslI	CCNNNNNNNGG	2 cut(s)	569, 589
BsmFI	GGGAC	2 cut(s)	98, 404
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	603
Bsp143I	GATC	6 cut(s)	228, 310, 402, 516, 553, 613
BspACI	CCGC	4 cut(s)	267, 362, 382, 527
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	2 cut(s)	209, 236
BspLI	GGNNCC	5 cut(s)	205, 380, 420, 430, 687
BspMAI	CTGCAG	1 cut(s)	411
BspOI	GCTAGC	1 cut(s)	195
BspPI	GGATC	2 cut(s)	397, 608
BspQI	GCTCTTC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	608, 689
BssECI	CCNNGG	2 cut(s)	421, 715
BssMI	GATC	6 cut(s)	228, 310, 402, 516, 553, 613
BssT1I	CCWWGG	1 cut(s)	715
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	3 cut(s)	112, 124, 445
Bst6I	CTCTTC	3 cut(s)	220, 311, 482
BstBAI	YACGTR	1 cut(s)	475
BstC8I	GCNNGC	3 cut(s)	193, 269, 630
BstDEI	CTNAG	2 cut(s)	196, 223
BstF5I	GGATG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	6 cut(s)	231, 313, 405, 519, 556, 616
BstMBI	GATC	6 cut(s)	228, 310, 402, 516, 553, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	414, 421
BstSFI	CTRYAG	1 cut(s)	407
BstV1I	GCAGC	1 cut(s)	688
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	603
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	231, 441
Cac8I	GCNNGC	3 cut(s)	193, 269, 630
CaiI	CAGNNNCTG	1 cut(s)	415
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	5 cut(s)	178, 297, 472, 547, 663
CviAII	CATG	2 cut(s)	451, 514
CviQI	GTAC	5 cut(s)	178, 297, 472, 547, 663
DdeI	CTNAG	2 cut(s)	196, 223
DpnI	GATC	6 cut(s)	230, 312, 404, 518, 555, 615
DpnII	GATC	6 cut(s)	228, 310, 402, 516, 553, 613
DriI	GACNNNNNGTC	1 cut(s)	445
EaeI	YGGCCR	1 cut(s)	601
Eam1104I	CTCTTC	3 cut(s)	220, 311, 482
Eam1105I	GACNNNNNGTC	1 cut(s)	445
EarI	CTCTTC	3 cut(s)	220, 311, 482
Eco130I	CCWWGG	1 cut(s)	715
Eco47I	GGWCC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	715
ErhI	CCWWGG	1 cut(s)	715
FaeI	CATG	2 cut(s)	454, 517
FaqI	GGGAC	2 cut(s)	98, 404
FatI	CATG	2 cut(s)	450, 513
FauI	CCCGC	2 cut(s)	260, 520
FbaI	TGATCA	3 cut(s)	228, 310, 516
FblI	GTMKAC	1 cut(s)	341
Fnu4HI	GCNGC	2 cut(s)	363, 677
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	2 cut(s)	363, 677
FspBI	CTAG	5 cut(s)	155, 192, 300, 666, 766
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	2 cut(s)	363, 677
GsaI	CCCAGC	1 cut(s)	191
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	3 cut(s)	423, 590, 698
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	454, 517
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	2 cut(s)	127, 342
HindII	GTYRAC	2 cut(s)	127, 342
HinfI	GANTC	1 cut(s)	490
HpaI	GTTAAC	1 cut(s)	127
HpaII	CCGG	3 cut(s)	423, 590, 698
HphI	GGTGA	2 cut(s)	223, 497
Hpy166II	GTNNAC	2 cut(s)	127, 342
Hpy188I	TCNGA	3 cut(s)	199, 315, 495
Hpy188III	TCNNGA	5 cut(s)	400, 484, 557, 570, 722
Hpy8I	GTNNAC	2 cut(s)	127, 342
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	3 cut(s)	112, 124, 445
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	4 cut(s)	77, 167, 409, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	2 cut(s)	196, 223
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	2 cut(s)	454, 517
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	3 cut(s)	228, 310, 516
KspAI	GTTAAC	1 cut(s)	127
Kzo9I	GATC	6 cut(s)	228, 310, 402, 516, 553, 613
LguI	GCTCTTC	1 cut(s)	311
Lsp1109I	GCAGC	1 cut(s)	688
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	5 cut(s)	155, 192, 300, 666, 766
MaeII	ACGT	1 cut(s)	474
MalI	GATC	6 cut(s)	230, 312, 404, 518, 555, 615
MboI	GATC	6 cut(s)	228, 310, 402, 516, 553, 613
MboII	GAAGA	6 cut(s)	73, 207, 210, 301, 328, 499
MflI	RGATCY	1 cut(s)	402
MluCI	AATT	2 cut(s)	50, 208
MlyI	GAGTC	1 cut(s)	499
MnlI	CCTC	8 cut(s)	101, 232, 360, 366, 369, 451, 627, 630
MroXI	GAANNNNTTC	2 cut(s)	465, 653
MseI	TTAA	2 cut(s)	53, 126
MspI	CCGG	3 cut(s)	423, 590, 698
MspR9I	CCNGG	2 cut(s)	416, 423
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	1 cut(s)	151
NciI	CCSGG	1 cut(s)	423
NdeII	GATC	6 cut(s)	228, 310, 402, 516, 553, 613
NheI	GCTAGC	1 cut(s)	191
NlaIII	CATG	2 cut(s)	454, 517
NlaIV	GGNNCC	5 cut(s)	205, 380, 420, 430, 687
PciSI	GCTCTTC	1 cut(s)	311
PctI	GAATGC	1 cut(s)	77
PdmI	GAANNNNTTC	2 cut(s)	465, 653
PkrI	GCNGC	2 cut(s)	364, 678
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
Ppu21I	YACGTR	1 cut(s)	475
PshBI	ATTAAT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	414
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	5 cut(s)	205, 380, 420, 430, 687
PspPI	GGNCC	1 cut(s)	418
PsrI	GAACNNNNNNTAC	2 cut(s)	464, 496
PstI	CTGCAG	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	402
RsaI	GTAC	5 cut(s)	179, 298, 473, 548, 664
RsaNI	GTAC	5 cut(s)	178, 297, 472, 547, 663
SalI	GTCGAC	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	53, 126
SatI	GCNGC	2 cut(s)	363, 677
Sau3AI	GATC	6 cut(s)	228, 310, 402, 516, 553, 613
Sau96I	GGNCC	1 cut(s)	418
ScaI	AGTACT	2 cut(s)	179, 548
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	2 cut(s)	416, 423
SfaNI	GCATC	1 cut(s)	393
SfcI	CTRYAG	1 cut(s)	407
SinI	GGWCC	1 cut(s)	418
SpeI	ACTAGT	2 cut(s)	299, 665
Sse9I	AATT	2 cut(s)	50, 208
SsiI	CCGC	4 cut(s)	267, 362, 382, 527
SspI	AATATT	1 cut(s)	704
SspMI	CTAG	5 cut(s)	155, 192, 300, 666, 766
StyD4I	CCNGG	2 cut(s)	414, 421
StyI	CCWWGG	1 cut(s)	715
TaaI	ACNGT	3 cut(s)	112, 124, 445
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	1 cut(s)	341
TasI	AATT	2 cut(s)	50, 208
TatI	WGTACW	2 cut(s)	177, 546
TauI	GCSGC	1 cut(s)	365
Tru1I	TTAA	2 cut(s)	53, 126
Tru9I	TTAA	2 cut(s)	53, 126
TscAI	CASTG	2 cut(s)	231, 448
TseI	GCWGC	1 cut(s)	676
TspDTI	ATGAA	4 cut(s)	73, 302, 584, 767
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	231, 448
VpaK11BI	GGWCC	1 cut(s)	418
VspI	ATTAAT	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	341
XmnI	GAANNNNTTC	2 cut(s)	465, 653
XspI	CTAG	5 cut(s)	155, 192, 300, 666, 766
ZrmI	AGTACT	2 cut(s)	179, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.