RchiOBHm_Chr3g0462911
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0013088
Physical Location & Seq
Reverse (-)
10438405 .. 10440014
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 939 bp
ATGGAGGGTCATTATCCTCACCATCTTCATCAGCAGCAACAACAAGAGCTTCATCAGTTTCAGCTCCAACATCAGTTTCAGGTGGTTCAGCAACCCCAACAACTCCTTCCTCCTCCGCCGCAGCAGCATCTCAGTCCTCCTCCCATCACCGTCCACGTGGACGCCAGCGACAGGTTCCCCCAATGGAGTGTCCAAGAGACGAAGGAGCTGATAACGATCAGGGCGGGGCTGGATCAGACGTTCATGGAGACCAAACGAAACAAGCAGCTTTGGGAAGTGATTGCGACCCAGATGAAGGACAAGGGCCACAACCGCAGCGCCGAGCAGTGCAAATGTAAATGGAAGAACCTCGTCACCCGCTACAAGGGTTGTGAGACTGCGGAGGCGGAGACCATGAGGCAACAATTCCCCTTCTTCAATGACCTGGCAACCATCATGGCTGCCAGGGAGCAGAGAATGGTGTGGACAGAAGCCGACAGCATTGGAGGTGCAAGCGCGTCGAAGAAGAAAGCAGCGGCTGTTACGCTTTCGTCTGACGAGGAGGATGAGGATAACGAGGACAGCGAGGAGGCTGGGGAGAAGGGAATCACCGCGGCAAGGAAGAAGAAGAAGGTAATGAAGACCGGAAACATTGGAAGCAGCACTGGGATGGGTCTGGGTGGCAACAATGTGAAGGAGATATTGGAAGATTTCATGAGGCAACAGCTTCAGCTGGACATGCAATGGCGAGAGGAGTTTCAGGCCAGGGAGAACGAGAGGCGGATGAGGGAGTACGAGTGGAGGCAGACAATGGAGGCTCTTGAGAATGAGAGGCTGATGTTGGAGAGGGAATGGAGGGAGAGAGAAGAGCAAAGGAGGATGAGAGAGGAAGCTAGGGCTGAGAAGAGGGATGCTATCCTCACTGCTTTGCTAGACAGGCTTAATAGGGAGGATATGTAA

Protein Analysis

312

Amino Acids

36.71

Weight (kDa)

5.83

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 61 - 144 1.8e-21 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38250
fragaria_vesca FvH4_6g11330 FvH4_6g11330
malus_domestica MD04G1154600.v1.1 MD12G1168300.v1.1
prunus_persica Prupe.6G278600_v2.0.a1
pyrus_communis pycom04g13960 pycom12g15980
rosa_chinensis RchiOBHm_Chr3g0462911
rosa_laevigata RLG00000024825
rosa_multiflora Rmu_sc0000766.1_g000017
rosa_roxburghii Rroxscaffold_6G00417110
rosa_rugosa Rorug03G0059700
rosa_samantha Rh3AG118000 Rh3BG122900 Rh3CG124700 Rh3DG123400
rosa_wichuraiana Rw3G010010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 497, 593
AclWI GGATC 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 692
AcvI CACGTG 1 cut(s) 157
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 1 cut(s) 773
AfiI CCNNNNNNNGG 4 cut(s) 171, 295, 364, 597
AgsI TTSAA 1 cut(s) 418
AjnI CCWGG 3 cut(s) 423, 443, 743
AjuI GAANNNNNNNTTGG 6 cut(s) 60, 90, 92, 122, 665, 697
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 7 cut(s) 49, 64, 208, 268, 706, 712, 872
AluI AGCT 7 cut(s) 49, 64, 208, 268, 706, 712, 872
Alw26I GTCTC 4 cut(s) 191, 242, 368, 383
AlwI GGATC 1 cut(s) 240
AlwNI CAGNNNCTG 1 cut(s) 518
AoxI GGCC 2 cut(s) 304, 741
ApeKI GCWGC 8 cut(s) 34, 121, 124, 265, 315, 440, 512, 639
AspLEI GCGC 2 cut(s) 320, 497
AspS9I GGNCC 1 cut(s) 304
AsuHPI GGTGA 4 cut(s) 11, 139, 346, 580
BbrPI CACGTG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 626
BbvI GCAGC 8 cut(s) 46, 133, 136, 277, 327, 427, 524, 651
BccI CCATC 4 cut(s) 30, 152, 440, 643
BcgI CGANNNNNNTGC 2 cut(s) 480, 514
BciT130I CCWGG 3 cut(s) 425, 445, 745
BcoDI GTCTC 4 cut(s) 191, 242, 368, 383
BfaI CTAG 2 cut(s) 873, 911
BfoI RGCGCY 1 cut(s) 321
Bme1390I CCNGG 3 cut(s) 425, 445, 745
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 3 cut(s) 425, 445, 745
BmrI ACTGGG 1 cut(s) 654
BmsI GCATC 2 cut(s) 136, 880
BmuI ACTGGG 1 cut(s) 654
BpiI GAAGAC 1 cut(s) 626
BpuEI CTTGAG 1 cut(s) 821
BsaAI YACGTR 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 2 cut(s) 242, 383
BsaJI CCNNGG 3 cut(s) 444, 591, 744
BsaWI WCCGGW 1 cut(s) 623
BsaXI ACNNNNNCTCC 3 cut(s) 761, 791, 920
Bsc4I CCNNNNNNNGG 4 cut(s) 171, 295, 364, 597
Bse1I ACTGG 1 cut(s) 649
Bse3DI GCAATG 1 cut(s) 728
Bse8I GATNNNNATC 1 cut(s) 215
BseBI CCWGG 3 cut(s) 425, 445, 745
BseDI CCNNGG 3 cut(s) 444, 591, 744
BseGI GGATG 5 cut(s) 550, 654, 768, 864, 895
BseJI GATNNNNATC 1 cut(s) 215
BseLI CCNNNNNNNGG 4 cut(s) 171, 295, 364, 597
BseMI GCAATG 1 cut(s) 728
BseMII CTCAG 2 cut(s) 145, 870
BseNI ACTGG 1 cut(s) 649
BseRI GAGGAG 5 cut(s) 102, 129, 554, 581, 746
BseXI GCAGC 8 cut(s) 46, 133, 136, 277, 327, 427, 524, 651
BseYI CCCAGC 1 cut(s) 572
Bsh1236I CGCG 2 cut(s) 497, 593
BshFI GGCC 2 cut(s) 306, 743
BsiSI CCGG 1 cut(s) 624
BslI CCNNNNNNNGG 4 cut(s) 171, 295, 364, 597
BsmAI GTCTC 4 cut(s) 191, 242, 368, 383
BsmBI CGTCTC 1 cut(s) 191
BsnI GGCC 2 cut(s) 306, 743
Bso31I GGTCTC 2 cut(s) 242, 383
Bsp143I GATC 2 cut(s) 216, 232
BspANI GGCC 2 cut(s) 306, 743
BspCNI CTCAG 2 cut(s) 144, 871
BspFNI CGCG 2 cut(s) 497, 593
BspHI TCATGA 1 cut(s) 693
BspLI GGNNCC 1 cut(s) 176
BspPI GGATC 1 cut(s) 240
BspQI GCTCTTC 1 cut(s) 840
BspTNI GGTCTC 2 cut(s) 242, 383
BsrDI GCAATG 1 cut(s) 728
BsrI ACTGG 1 cut(s) 649
BssECI CCNNGG 3 cut(s) 444, 591, 744
BssMI GATC 2 cut(s) 216, 232
BssNI GRCGYC 1 cut(s) 162
Bst2UI CCWGG 3 cut(s) 425, 445, 745
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 2 cut(s) 840, 878
BstACI GRCGYC 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 166, 493
BstDEI CTNAG 2 cut(s) 131, 879
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 5 cut(s) 550, 654, 768, 864, 895
BstFNI CGCG 2 cut(s) 497, 593
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 2 cut(s) 320, 497
BstKTI GATC 2 cut(s) 219, 235
BstMAI GTCTC 4 cut(s) 191, 242, 368, 383
BstMBI GATC 2 cut(s) 216, 232
BstMWI GCNNNNNNNGC 4 cut(s) 124, 312, 718, 916
BstNI CCWGG 3 cut(s) 425, 445, 745
BstNSI RCATGY 1 cut(s) 721
BstSCI CCNGG 3 cut(s) 423, 443, 743
BstUI CGCG 2 cut(s) 497, 593
BstV1I GCAGC 8 cut(s) 46, 133, 136, 277, 327, 427, 524, 651
BstV2I GAAGAC 1 cut(s) 626
BsuRI GGCC 2 cut(s) 306, 743
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 5 cut(s) 550, 654, 768, 864, 895
BtsI GCAGTG 2 cut(s) 332, 900
BtsIMutI CAGTG 3 cut(s) 332, 642, 900
Cac8I GCNNGC 2 cut(s) 166, 493
CaiI CAGNNNCTG 1 cut(s) 518
CciI TCATGA 1 cut(s) 693
CfoI GCGC 2 cut(s) 320, 497
Cfr13I GGNCC 1 cut(s) 304
Cfr42I CCGCGG 1 cut(s) 594
CseI GACGC 2 cut(s) 170, 486
Csp6I GTAC 1 cut(s) 772
CviAII CATG 5 cut(s) 244, 394, 436, 694, 718
CviQI GTAC 1 cut(s) 772
DdeI CTNAG 2 cut(s) 131, 879
DpnI GATC 2 cut(s) 218, 234
DpnII GATC 2 cut(s) 216, 232
Eam1104I CTCTTC 2 cut(s) 840, 878
EarI CTCTTC 2 cut(s) 840, 878
EciI GGCGGA 3 cut(s) 105, 401, 775
Eco31I GGTCTC 2 cut(s) 242, 383
Eco57I CTGAAG 1 cut(s) 692
Eco72I CACGTG 1 cut(s) 157
EcoRII CCWGG 3 cut(s) 423, 443, 743
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 5 cut(s) 247, 397, 439, 697, 721
FaiI YATR 6 cut(s) 245, 395, 437, 695, 719, 935
FatI CATG 5 cut(s) 243, 393, 435, 693, 717
FauI CCCGC 2 cut(s) 217, 365
FokI GGATG 5 cut(s) 557, 661, 775, 871, 902
FspBI CTAG 2 cut(s) 873, 911
GlaI GCGC 2 cut(s) 319, 496
GsaI CCCAGC 1 cut(s) 576
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 2 cut(s) 306, 743
HapII CCGG 1 cut(s) 624
HgaI GACGC 2 cut(s) 170, 486
HhaI GCGC 2 cut(s) 320, 497
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 5 cut(s) 247, 397, 439, 697, 721
Hin6I GCGC 2 cut(s) 318, 495
HinP1I GCGC 2 cut(s) 318, 495
HinfI GANTC 1 cut(s) 585
HpaII CCGG 1 cut(s) 624
HphI GGTGA 4 cut(s) 11, 139, 346, 580
Hpy166II GTNNAC 3 cut(s) 154, 160, 465
Hpy188I TCNGA 2 cut(s) 237, 535
Hpy188III TCNNGA 2 cut(s) 694, 800
Hpy8I GTNNAC 3 cut(s) 154, 160, 465
Hpy99I CGWCG 1 cut(s) 502
HpyAV CCTTC 7 cut(s) 116, 196, 289, 421, 574, 604, 667
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 2 cut(s) 156, 239
HpyCH4V TGCA 3 cut(s) 330, 491, 721
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 312, 718, 916
HpyF3I CTNAG 2 cut(s) 131, 879
HpySE526I ACGT 2 cut(s) 156, 239
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 5 cut(s) 247, 397, 439, 697, 721
HspAI GCGC 2 cut(s) 318, 495
KspI CCGCGG 1 cut(s) 594
Kzo9I GATC 2 cut(s) 216, 232
LguI GCTCTTC 1 cut(s) 840
LmnI GCTCC 3 cut(s) 69, 205, 448
Lsp1109I GCAGC 8 cut(s) 46, 133, 136, 277, 327, 427, 524, 651
LweI GCATC 2 cut(s) 136, 880
MaeI CTAG 2 cut(s) 873, 911
MaeII ACGT 2 cut(s) 156, 239
MaeIII GTNAC 2 cut(s) 352, 520
MalI GATC 2 cut(s) 218, 234
MboI GATC 2 cut(s) 216, 232
MluCI AATT 1 cut(s) 404
MmeI TCCRAC 2 cut(s) 91, 801
MseI TTAA 1 cut(s) 921
MslI CAYNNNNRTG 1 cut(s) 647
MspA1I CMGCKG 3 cut(s) 515, 593, 712
MspI CCGG 1 cut(s) 624
MspR9I CCNGG 3 cut(s) 425, 445, 745
MvaI CCWGG 3 cut(s) 425, 445, 745
MvnI CGCG 2 cut(s) 497, 593
MwoI GCNNNNNNNGC 4 cut(s) 124, 312, 718, 916
NdeII GATC 2 cut(s) 216, 232
NlaIII CATG 5 cut(s) 247, 397, 439, 697, 721
NlaIV GGNNCC 1 cut(s) 176
NmeAIII GCCGAG 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 1 cut(s) 721
PagI TCATGA 1 cut(s) 693
PciSI GCTCTTC 1 cut(s) 840
PcsI WCGNNNNNNNCGW 1 cut(s) 561
PfeI GAWTC 1 cut(s) 585
PmaCI CACGTG 1 cut(s) 157
PmlI CACGTG 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 157
Psp6I CCWGG 3 cut(s) 423, 443, 743
PspCI CACGTG 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 3 cut(s) 423, 443, 743
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 712
RsaI GTAC 1 cut(s) 773
RsaNI GTAC 1 cut(s) 772
RseI CAYNNNNRTG 1 cut(s) 647
SacII CCGCGG 1 cut(s) 594
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 1 cut(s) 921
Sau3AI GATC 2 cut(s) 216, 232
Sau96I GGNCC 1 cut(s) 304
ScrFI CCNGG 3 cut(s) 425, 445, 745
SfaNI GCATC 2 cut(s) 136, 880
Sfr303I CCGCGG 1 cut(s) 594
SgrBI CCGCGG 1 cut(s) 594
SmiMI CAYNNNNRTG 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 800
SmoI CTYRAG 1 cut(s) 800
Sse9I AATT 1 cut(s) 404
SspMI CTAG 2 cut(s) 873, 911
StyD4I CCNGG 3 cut(s) 423, 443, 743
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 2 cut(s) 159, 242
TaqI TCGA 1 cut(s) 500
TasI AATT 1 cut(s) 404
TauI GCSGC 3 cut(s) 121, 518, 596
TfiI GAWTC 1 cut(s) 585
Tru1I TTAA 1 cut(s) 921
Tru9I TTAA 1 cut(s) 921
TscAI CASTG 3 cut(s) 332, 649, 907
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 8 cut(s) 34, 121, 124, 265, 315, 440, 512, 639
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 6 cut(s) 17, 41, 232, 308, 632, 682
TspRI CASTG 3 cut(s) 332, 649, 907
XceI RCATGY 1 cut(s) 721
XspI CTAG 2 cut(s) 873, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.