RchiOBHm_Chr3g0463971

Ataxin-3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016089
Physical Location & Seq
Forward (+)
11253130 .. 11256473
3344 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1086 bp
ATGGAAGGGTCGAGCAACGGAGGGATGCTGTACCACGAGGTGCAGGAGTCGAAGCTGTGCGCCGTGCATTGCGTCAACACGGCGCTGCAGGGTCCCTTCTTCTCCGAATTCGATTTGGCCGCCCTCGCCTCCGATCTCGATCGCAAGGAGCGCCAGATGATGCAGCTCAACCTCCAACCCGGAGCCAACGCCGCCGCCGCCGGCGATTTCCTCTCCGAGGAGTCCCACAACGTCTCCCTCGACGGCGATTTCAGTATCCAGGTACTTCAAAAGGCTTTAGAGGTTTGGGATCTGCAGGTCATCCCCCTTGATTCTCCAGTTGCAGAGCCAGCTCAGATCGATCCTGAGCTGGAAAATGGGTTTATCTGTCATTTACATGATCATTGGTTCTGTATCAGGAAAGTGAATGGGGAGTGGTATAATTTTGACAGTCTGTATGCAGCCCCACTTCACCTTTCAAAGTTTTACCTCTCGGCCTATTTGGACACGCTAAAGGGCTCTGGTTGGAGCATTTTCCTGGTGAGAGGAAACTTCCCAAAAGAGTGTCCCATCTCATCCTCAGAAGCTTCCAACGGGTATGGGCAGTGGCTTTCACCTGAAGATGCCGACCGAATAACTAAATCCTGCAACTCCACAAATGCTCCACGCCAGACGCAGAGAACAAATCCTCGACAACCTTCAGACCAATTCCTATCTACCGAGGAAGCAGAGCTGCTATCAGAGATGGAAGACGAGGACATGAAGGCTGCAATAGCTGCCAGTCTTATGGATTCTTCCCCACCCGTGGTCAATGCCGGAGCTAGCAACGTGGCCAATGCTGGAGATAGCAACGTGGTCAATGCCGGAGCTAGCAACGTGGCCCATGCCGGAGCTAGCAACGTGATCAATGCCGGAGATAGCAACGTGGTCAATGTCGGAGCTAGCAATGTGGCCAATGCTGGAGATAGCAACGTGGTCAATGCTGGAGCTAGCAATGTGGCCATTGCTGGAGCTAGCAATGTGGCCATTGCTGGAGCTAGCAACCCGCAGAATGAAAGCTCAAACAGCCAAGAGAACAAGATCAGCCAAGAGAATAAAATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Josephin

Protein Analysis

361

Amino Acids

38.35

Weight (kDa)

4.44

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Josephin PF02099 15 - 175 1.1e-53 Josephin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54130
fragaria_vesca FvH4_6g12170
malus_domestica MD04G1146200.v1.1 MD12G1159400.v1.1
prunus_persica Prupe.6G269800_v2.0.a1
pyrus_communis pycom04g13180
rosa_chinensis RchiOBHm_Chr3g0463971
rosa_laevigata RLG00000024731
rosa_multiflora Rmu_sc0006492.1_g000007
rosa_roxburghii Rroxscaffold_6G00416100
rosa_rugosa Rorug03G0069700
rosa_samantha Rh3AG126600 Rh3BG130800 Rh3DG132000
rosa_wichuraiana Rw3G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 286
AciI CCGC 5 cut(s) 120, 192, 195, 198, 1025
AclWI GGATC 2 cut(s) 297, 335
AcoI YGGCCR 5 cut(s) 117, 810, 930, 978, 1002
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 2 cut(s) 618, 663
AdeI CACNNNGTG 1 cut(s) 40
AfaI GTAC 2 cut(s) 32, 264
AfiI CCNNNNNNNGG 2 cut(s) 217, 784
AgsI TTSAA 2 cut(s) 269, 459
AjnI CCWGG 2 cut(s) 258, 516
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 2 cut(s) 297, 335
AoxI GGCC 7 cut(s) 117, 474, 810, 858, 930, 978, 1002
ApeKI GCWGC 6 cut(s) 85, 163, 440, 712, 746, 755
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 3 cut(s) 62, 85, 153
AspS9I GGNCC 2 cut(s) 92, 859
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 3 cut(s) 443, 532, 585
AsuNHI GCTAGC 7 cut(s) 800, 848, 872, 920, 968, 992, 1016
AvaII GGWCC 1 cut(s) 92
BalI TGGCCA 4 cut(s) 812, 932, 980, 1004
BanII GRGCYC 1 cut(s) 500
BauI CACGAG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 735
BbvI GCAGC 6 cut(s) 72, 175, 452, 699, 733, 742
BccI CCATC 2 cut(s) 557, 718
BceAI ACGGC 3 cut(s) 47, 96, 259
BciT130I CCWGG 2 cut(s) 260, 518
BciVI GTATCC 1 cut(s) 266
BclI TGATCA 2 cut(s) 379, 882
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 238
BfaI CTAG 7 cut(s) 801, 849, 873, 921, 969, 993, 1017
BfmI CTRYAG 2 cut(s) 86, 293
BfoI RGCGCY 2 cut(s) 86, 154
BfuAI ACCTGC 1 cut(s) 286
BfuI GTATCC 1 cut(s) 266
Bme1390I CCNGG 3 cut(s) 180, 260, 518
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 2 cut(s) 92, 859
BmiI GGNNCC 3 cut(s) 93, 94, 184
BmrFI CCNGG 3 cut(s) 180, 260, 518
BmsI GCATC 3 cut(s) 15, 150, 592
BmtI GCTAGC 7 cut(s) 804, 852, 876, 924, 972, 996, 1020
BpiI GAAGAC 1 cut(s) 735
BpmI CTGGAG 6 cut(s) 300, 840, 960, 984, 1008, 1032
Bpu10I CCTNAGC 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 180
Bsa29I ATCGAT 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 3 cut(s) 216, 699, 783
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 625, 655
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 784
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 317, 759
Bse3DI GCAATG 6 cut(s) 67, 931, 979, 981, 1003, 1005
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 2 cut(s) 260, 518
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 216, 699, 783
BseGI GGATG 3 cut(s) 30, 300, 554
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 217, 784
BseMI GCAATG 6 cut(s) 67, 931, 979, 981, 1003, 1005
BseMII CTCAG 3 cut(s) 336, 347, 573
BseNI ACTGG 2 cut(s) 317, 759
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 6 cut(s) 72, 175, 452, 699, 733, 742
BsgI GTGCAG 1 cut(s) 62
Bsh1285I CGRYCG 2 cut(s) 142, 610
BshFI GGCC 7 cut(s) 119, 476, 812, 860, 932, 980, 1004
BshVI ATCGAT 1 cut(s) 339
BsiEI CGRYCG 2 cut(s) 142, 610
BsiSI CCGG 6 cut(s) 180, 201, 795, 843, 867, 891
BslFI GGGAC 3 cut(s) 78, 208, 531
BslI CCNNNNNNNGG 2 cut(s) 217, 784
BsmAI GTCTC 1 cut(s) 238
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 3 cut(s) 78, 208, 531
BsnI GGCC 7 cut(s) 119, 476, 812, 860, 932, 980, 1004
Bsp1286I GDGCHC 1 cut(s) 500
Bsp143I GATC 8 cut(s) 133, 139, 289, 336, 340, 379, 882, 1059
BspACI CCGC 5 cut(s) 120, 192, 195, 198, 1025
BspANI GGCC 7 cut(s) 119, 476, 812, 860, 932, 980, 1004
BspCNI CTCAG 3 cut(s) 337, 346, 572
BspDI ATCGAT 1 cut(s) 339
BspLI GGNNCC 3 cut(s) 93, 94, 184
BspMAI CTGCAG 2 cut(s) 90, 297
BspMI ACCTGC 1 cut(s) 286
BspOI GCTAGC 7 cut(s) 804, 852, 876, 924, 972, 996, 1020
BspPI GGATC 2 cut(s) 297, 335
BsrDI GCAATG 6 cut(s) 67, 931, 979, 981, 1003, 1005
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 2 cut(s) 317, 759
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 3 cut(s) 216, 699, 783
BssMI GATC 8 cut(s) 133, 139, 289, 336, 340, 379, 882, 1059
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 260, 518
Bst4CI ACNGT 1 cut(s) 431
BstAPI GCANNNNNTGC 1 cut(s) 755
BstC8I GCNNGC 9 cut(s) 202, 330, 802, 850, 874, 922, 970, 994, 1018
BstDEI CTNAG 3 cut(s) 333, 345, 559
BstDSI CCRYGG 1 cut(s) 783
BstENI CCTNNNNNAGG 1 cut(s) 215
BstF5I GGATG 3 cut(s) 30, 300, 554
BstH2I RGCGCY 2 cut(s) 86, 154
BstHHI GCGC 3 cut(s) 62, 85, 153
BstKTI GATC 8 cut(s) 136, 142, 292, 339, 343, 382, 885, 1062
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 8 cut(s) 133, 139, 289, 336, 340, 379, 882, 1059
BstMCI CGRYCG 2 cut(s) 142, 610
BstMWI GCNNNNNNNGC 8 cut(s) 125, 150, 191, 197, 329, 752, 755, 1044
BstNI CCWGG 2 cut(s) 260, 518
BstSCI CCNGG 3 cut(s) 178, 258, 516
BstSFI CTRYAG 2 cut(s) 86, 293
BstV1I GCAGC 6 cut(s) 72, 175, 452, 699, 733, 742
BstV2I GAAGAC 1 cut(s) 735
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 766
BstYI RGATCY 1 cut(s) 289
Bsu15I ATCGAT 1 cut(s) 339
BsuI GTATCC 1 cut(s) 266
BsuRI GGCC 7 cut(s) 119, 476, 812, 860, 932, 980, 1004
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 783
BtsCI GGATG 3 cut(s) 30, 300, 554
BtsI GCAGTG 1 cut(s) 590
BtsIMutI CAGTG 1 cut(s) 590
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 9 cut(s) 202, 330, 802, 850, 874, 922, 970, 994, 1018
CfoI GCGC 3 cut(s) 62, 85, 153
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 92, 859
ClaI ATCGAT 1 cut(s) 339
CseI GACGC 2 cut(s) 61, 661
Csp6I GTAC 2 cut(s) 31, 263
CviAII CATG 3 cut(s) 377, 739, 863
CviQI GTAC 2 cut(s) 31, 263
DdeI CTNAG 3 cut(s) 333, 345, 559
DpnI GATC 8 cut(s) 135, 141, 291, 338, 342, 381, 884, 1061
DpnII GATC 8 cut(s) 133, 139, 289, 336, 340, 379, 882, 1059
DraIII CACNNNGTG 1 cut(s) 40
EaeI YGGCCR 5 cut(s) 117, 810, 930, 978, 1002
Eco24I GRGCYC 1 cut(s) 500
Eco47I GGWCC 1 cut(s) 92
Eco57I CTGAAG 2 cut(s) 618, 663
EcoNI CCTNNNNNAGG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 258, 516
EcoT38I GRGCYC 1 cut(s) 500
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 3 cut(s) 380, 742, 866
FaiI YATR 7 cut(s) 378, 420, 438, 579, 740, 767, 864
FaqI GGGAC 3 cut(s) 78, 208, 531
FatI CATG 3 cut(s) 376, 738, 862
FauI CCCGC 1 cut(s) 1032
FbaI TGATCA 2 cut(s) 379, 882
FokI GGATG 3 cut(s) 37, 287, 541
FriOI GRGCYC 1 cut(s) 500
FspBI CTAG 7 cut(s) 801, 849, 873, 921, 969, 993, 1017
GlaI GCGC 3 cut(s) 61, 84, 152
GsuI CTGGAG 6 cut(s) 300, 840, 960, 984, 1008, 1032
HaeII RGCGCY 2 cut(s) 86, 154
HaeIII GGCC 7 cut(s) 119, 476, 812, 860, 932, 980, 1004
HapII CCGG 6 cut(s) 180, 201, 795, 843, 867, 891
HgaI GACGC 2 cut(s) 61, 661
HhaI GCGC 3 cut(s) 62, 85, 153
Hin1II CATG 3 cut(s) 380, 742, 866
Hin6I GCGC 3 cut(s) 60, 83, 151
HinP1I GCGC 3 cut(s) 60, 83, 151
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 564
HinfI GANTC 4 cut(s) 47, 221, 311, 770
HpaII CCGG 6 cut(s) 180, 201, 795, 843, 867, 891
HphI GGTGA 3 cut(s) 443, 532, 585
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 8 cut(s) 106, 133, 217, 336, 562, 682, 721, 917
Hpy188III TCNNGA 3 cut(s) 137, 344, 397
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 3 cut(s) 106, 687, 736
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4IV ACGT 7 cut(s) 231, 807, 831, 855, 879, 903, 951
HpyCH4V TGCA 9 cut(s) 43, 67, 88, 163, 295, 323, 440, 627, 749
HpyF10VI GCNNNNNNNGC 8 cut(s) 125, 150, 191, 197, 329, 752, 755, 1044
HpyF3I CTNAG 3 cut(s) 333, 345, 559
HpySE526I ACGT 7 cut(s) 231, 807, 831, 855, 879, 903, 951
Hsp92II CATG 3 cut(s) 380, 742, 866
HspAI GCGC 3 cut(s) 60, 83, 151
KflI GGGWCCC 1 cut(s) 92
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Ksp22I TGATCA 2 cut(s) 379, 882
Kzo9I GATC 8 cut(s) 133, 139, 289, 336, 340, 379, 882, 1059
Lsp1109I GCAGC 6 cut(s) 72, 175, 452, 699, 733, 742
LweI GCATC 3 cut(s) 15, 150, 592
MaeI CTAG 7 cut(s) 801, 849, 873, 921, 969, 993, 1017
MaeII ACGT 7 cut(s) 231, 807, 831, 855, 879, 903, 951
MalI GATC 8 cut(s) 135, 141, 291, 338, 342, 381, 884, 1061
MboI GATC 8 cut(s) 133, 139, 289, 336, 340, 379, 882, 1059
MboII GAAGA 4 cut(s) 91, 611, 740, 765
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 500
MlsI TGGCCA 4 cut(s) 812, 932, 980, 1004
MluCI AATT 4 cut(s) 107, 421, 686, 1077
MluNI TGGCCA 4 cut(s) 812, 932, 980, 1004
MlyI GAGTC 2 cut(s) 56, 230
MmeI TCCRAC 4 cut(s) 199, 485, 594, 895
Mox20I TGGCCA 4 cut(s) 812, 932, 980, 1004
MreI CGCCGGCG 1 cut(s) 200
MroNI GCCGGC 1 cut(s) 200
MscI TGGCCA 4 cut(s) 812, 932, 980, 1004
MslI CAYNNNNRTG 1 cut(s) 375
Msp20I TGGCCA 4 cut(s) 812, 932, 980, 1004
MspI CCGG 6 cut(s) 180, 201, 795, 843, 867, 891
MspR9I CCNGG 3 cut(s) 180, 260, 518
MvaI CCWGG 2 cut(s) 260, 518
MwoI GCNNNNNNNGC 8 cut(s) 125, 150, 191, 197, 329, 752, 755, 1044
NaeI GCCGGC 1 cut(s) 202
NciI CCSGG 1 cut(s) 180
NdeII GATC 8 cut(s) 133, 139, 289, 336, 340, 379, 882, 1059
NgoMIV GCCGGC 1 cut(s) 200
NheI GCTAGC 7 cut(s) 800, 848, 872, 920, 968, 992, 1016
NlaIII CATG 3 cut(s) 380, 742, 866
NlaIV GGNNCC 3 cut(s) 93, 94, 184
NmeAIII GCCGAG 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 311, 770
Ple19I CGATCG 1 cut(s) 142
PleI GAGTC 2 cut(s) 55, 229
PpsI GAGTC 2 cut(s) 55, 229
PpuMI RGGWCCY 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 258, 516
PspGI CCWGG 2 cut(s) 258, 516
PspN4I GGNNCC 3 cut(s) 93, 94, 184
PspPI GGNCC 2 cut(s) 92, 859
PspPPI RGGWCCY 1 cut(s) 92
PstI CTGCAG 2 cut(s) 90, 297
PsuI RGATCY 1 cut(s) 289
PvuI CGATCG 1 cut(s) 142
RsaI GTAC 2 cut(s) 32, 264
RsaNI GTAC 2 cut(s) 31, 263
RseI CAYNNNNRTG 1 cut(s) 375
Sau3AI GATC 8 cut(s) 133, 139, 289, 336, 340, 379, 882, 1059
Sau96I GGNCC 2 cut(s) 92, 859
SchI GAGTC 2 cut(s) 56, 230
ScrFI CCNGG 3 cut(s) 180, 260, 518
SduI GDGCHC 1 cut(s) 500
SfaNI GCATC 3 cut(s) 15, 150, 592
SfcI CTRYAG 2 cut(s) 86, 293
SgrAI CRCCGGYG 1 cut(s) 200
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 375
Sse9I AATT 4 cut(s) 107, 421, 686, 1077
SsiI CCGC 5 cut(s) 120, 192, 195, 198, 1025
SspMI CTAG 7 cut(s) 801, 849, 873, 921, 969, 993, 1017
StyD4I CCNGG 3 cut(s) 178, 258, 516
TaaI ACNGT 1 cut(s) 431
TaiI ACGT 7 cut(s) 234, 810, 834, 858, 882, 906, 954
TaqI TCGA 7 cut(s) 11, 50, 111, 138, 240, 339, 670
TaqII GACCGA 1 cut(s) 624
TasI AATT 4 cut(s) 107, 421, 686, 1077
TauI GCSGC 4 cut(s) 122, 194, 197, 200
TfiI GAWTC 2 cut(s) 311, 770
TscAI CASTG 1 cut(s) 590
TseI GCWGC 6 cut(s) 85, 163, 440, 712, 746, 755
TspDTI ATGAA 2 cut(s) 755, 1047
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 590
VpaK11BI GGWCC 1 cut(s) 92
XagI CCTNNNNNAGG 1 cut(s) 215
XapI RAATTY 1 cut(s) 107
XspI CTAG 7 cut(s) 801, 849, 873, 921, 969, 993, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.