RchiOBHm_Chr3g0464101

Heme-binding-like protein At3g10130

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016231
Physical Location & Seq
Reverse (-)
11312465 .. 11313400
936 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 855 bp
ATGGGCCCATCAAAATGGTGGCCGGACAGTGTCCACGAGTACATCACCAAAATCAGCCACTCGTTCAAGAGTGGACATTTCCAACCTCTTCCACAAGCAATCCCATCAAACGAAAGCCAAAAACAAGAGAAAACCTCCTCTCCAAGCAAAGGATCAATACAAATAGGTTTCTCCCAACAATCCACAGCAAATTCCATCCTCATTCTCTCAAATTTTCACAAGCAAATCACAAACAGAACCCCAAATTCCAACATGGGAATGGTATTTGGAAAAATTGCTGTAGAAACCCCAAAATACCAAGTCCTTAAATCCACAGCCGATTACGAAATCCGGCAATATGCACCATCAGTGGCAGCTCAAGTCACCTATGATCCATCAGTGTTCAATGGCAACAGAGATGGTGGGTTTACTGTGCTGGCCAATTACATAGGCGCTCTTGGCAATCCCCAGAACACCAAGCCTGAGAAGATAGCCATGACTGCTCCAGTCATAACCCAGCAAAGCTCGGCTGAAAAGATCGCCATGACAGCTCCAGTTGTGACGAAAGAAGCTGGGGATGCGAAGACGGTGACAATGCAATTCCTGCTGCCTGCTAAGTATCAGAAGGCGGAGGAGGCGCCGAAGCCGGTGGATGAGAGAGTGGTGATTAGGGAAGTGGGGGAGAGGAAGTATGCGGTGGTGACTTTTAGCGGAGTGGCGTCAGAGCAAGTGGTGGAGGATCGGGTGGAGAAGCTTAAGAGGGCTTTGGAGAAAGATGGGTTTAAGATTATAGGGGAGTATTTGCTGGCGAGGTTTAACCCACCTTGGACCCTGCCTGCATTTAGGACAAATGAGGTTATGATCCCAGTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

284

Amino Acids

31.42

Weight (kDa)

9.15

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 94 - 168 2.2e-17 SOUL heme-binding protein
SOUL PF04832 168 - 282 4.4e-31 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37970
fragaria_vesca FvH4_6g12281
malus_domestica MD04G1144100.v1.1 MD12G1158200.v1.1
prunus_persica Prupe.6G268400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0464101
rosa_laevigata RLG00000024723
rosa_multiflora Rmu_sc0006492.1_g000021 Rmu_sc0010401.1_g000002
rosa_roxburghii Rroxscaffold_6G00416000
rosa_rugosa Rorug03G0070700
rosa_samantha Rh3BG131900 Rh3CG134100 Rh3DG133100
rosa_wichuraiana Rw3G010790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 616
AciI CCGC 3 cut(s) 608, 674, 690
AclWI GGATC 4 cut(s) 160, 365, 726, 835
AcoI YGGCCR 2 cut(s) 20, 417
AcsI RAATTY 3 cut(s) 190, 211, 244
AcyI GRCGYC 2 cut(s) 617, 698
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 149
AflII CTTAAG 1 cut(s) 734
AgsI TTSAA 2 cut(s) 67, 385
AluBI AGCT 5 cut(s) 356, 504, 530, 551, 733
AluI AGCT 5 cut(s) 356, 504, 530, 551, 733
AlwI GGATC 4 cut(s) 160, 365, 726, 835
AoxI GGCC 3 cut(s) 4, 20, 417
ApaI GGGCCC 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 353, 586
ApoI RAATTY 3 cut(s) 190, 211, 244
AspLEI GCGC 2 cut(s) 434, 619
AspS9I GGNCC 3 cut(s) 4, 5, 807
AsuHPI GGTGA 5 cut(s) 37, 355, 580, 655, 691
AvaII GGWCC 1 cut(s) 807
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 419
BanI GGYRCC 1 cut(s) 616
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 569
BbvI GCAGC 2 cut(s) 365, 573
BccI CCATC 7 cut(s) 16, 112, 203, 352, 382, 392, 749
BfmI CTRYAG 1 cut(s) 279
BfoI RGCGCY 2 cut(s) 435, 620
BfrI CTTAAG 1 cut(s) 734
BisI GCNGC 2 cut(s) 354, 587
BlsI GCNGC 2 cut(s) 355, 588
Bme18I GGWCC 1 cut(s) 807
BmgT120I GGNCC 3 cut(s) 4, 5, 807
BmiI GGNNCC 3 cut(s) 6, 618, 809
BmrI ACTGGG 1 cut(s) 839
BmsI GCATC 1 cut(s) 547
BmuI ACTGGG 1 cut(s) 839
BpiI GAAGAC 1 cut(s) 569
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 2 cut(s) 468, 516
BpuEI CTTGAG 1 cut(s) 342
BsaHI GRCGYC 2 cut(s) 617, 698
BsaJI CCNNGG 1 cut(s) 803
BsaXI ACNNNNNCTCC 4 cut(s) 124, 154, 653, 683
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse118I RCCGGY 1 cut(s) 625
Bse1I ACTGG 3 cut(s) 485, 533, 845
BseDI CCNNGG 1 cut(s) 803
BseGI GGATG 3 cut(s) 195, 562, 637
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 3 cut(s) 485, 533, 845
BseRI GAGGAG 2 cut(s) 127, 626
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 2 cut(s) 365, 573
BseYI CCCAGC 2 cut(s) 495, 551
BshFI GGCC 3 cut(s) 6, 22, 419
BshNI GGYRCC 1 cut(s) 616
BsiSI CCGG 3 cut(s) 23, 331, 626
BslI CCNNNNNNNGG 1 cut(s) 149
BsnI GGCC 3 cut(s) 6, 22, 419
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 152, 370, 516, 718, 840
BspACI CCGC 3 cut(s) 608, 674, 690
BspANI GGCC 3 cut(s) 6, 22, 419
BspCNI CTCAG 1 cut(s) 454
BspLI GGNNCC 3 cut(s) 6, 618, 809
BspPI GGATC 4 cut(s) 160, 365, 726, 835
BspT107I GGYRCC 1 cut(s) 616
BspTI CTTAAG 1 cut(s) 734
BsrFI RCCGGY 1 cut(s) 625
BsrI ACTGG 3 cut(s) 485, 533, 845
BssAI RCCGGY 1 cut(s) 625
BssECI CCNNGG 1 cut(s) 803
BssMI GATC 5 cut(s) 152, 370, 516, 718, 840
BssNI GRCGYC 2 cut(s) 617, 698
BssSI CACGAG 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 803
Bst2BI CACGAG 1 cut(s) 35
Bst4CI ACNGT 3 cut(s) 29, 412, 568
Bst6I CTCTTC 1 cut(s) 93
BstACI GRCGYC 2 cut(s) 617, 698
BstAFI CTTAAG 1 cut(s) 734
BstAPI GCANNNNNTGC 1 cut(s) 583
BstC8I GCNNGC 4 cut(s) 417, 591, 786, 816
BstDEI CTNAG 2 cut(s) 462, 594
BstF5I GGATG 3 cut(s) 195, 562, 637
BstH2I RGCGCY 2 cut(s) 435, 620
BstHHI GCGC 2 cut(s) 434, 619
BstKTI GATC 5 cut(s) 155, 373, 519, 721, 843
BstMBI GATC 5 cut(s) 152, 370, 516, 718, 840
BstMWI GCNNNNNNNGC 6 cut(s) 438, 479, 527, 557, 583, 614
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 365, 573
BstV2I GAAGAC 1 cut(s) 569
BstXI CCANNNNNNTGG 1 cut(s) 15
BsuRI GGCC 3 cut(s) 6, 22, 419
BtsCI GGATG 3 cut(s) 195, 562, 637
BtsIMutI CAGTG 3 cut(s) 34, 354, 384
Cac8I GCNNGC 4 cut(s) 417, 591, 786, 816
CfoI GCGC 2 cut(s) 434, 619
Cfr10I RCCGGY 1 cut(s) 625
Cfr13I GGNCC 3 cut(s) 4, 5, 807
CseI GACGC 1 cut(s) 687
Csp6I GTAC 1 cut(s) 40
CviAII CATG 3 cut(s) 253, 475, 523
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 2 cut(s) 462, 594
DinI GGCGCC 1 cut(s) 618
DpnI GATC 5 cut(s) 154, 372, 518, 720, 842
DpnII GATC 5 cut(s) 152, 370, 516, 718, 840
EaeI YGGCCR 2 cut(s) 20, 417
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
EciI GGCGGA 1 cut(s) 623
Eco130I CCWWGG 1 cut(s) 803
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 807
EcoT14I CCWWGG 1 cut(s) 803
EcoT38I GRGCYC 1 cut(s) 8
EgeI GGCGCC 1 cut(s) 618
EheI GGCGCC 1 cut(s) 618
ErhI CCWWGG 1 cut(s) 803
FaeI CATG 3 cut(s) 256, 478, 526
FatI CATG 3 cut(s) 252, 474, 522
Fnu4HI GCNGC 2 cut(s) 354, 587
FokI GGATG 3 cut(s) 182, 569, 644
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 354, 587
GlaI GCGC 2 cut(s) 433, 618
GluI GCNGC 2 cut(s) 354, 587
GsaI CCCAGC 2 cut(s) 499, 555
GsuI CTGGAG 2 cut(s) 468, 516
HaeII RGCGCY 2 cut(s) 435, 620
HaeIII GGCC 3 cut(s) 6, 22, 419
HapII CCGG 3 cut(s) 23, 331, 626
HgaI GACGC 1 cut(s) 687
HhaI GCGC 2 cut(s) 434, 619
Hin1I GRCGYC 2 cut(s) 617, 698
Hin1II CATG 3 cut(s) 256, 478, 526
Hin6I GCGC 2 cut(s) 432, 617
HinP1I GCGC 2 cut(s) 432, 617
HindIII AAGCTT 1 cut(s) 731
HpaII CCGG 3 cut(s) 23, 331, 626
HphI GGTGA 5 cut(s) 37, 355, 580, 655, 691
Hpy166II GTNNAC 3 cut(s) 34, 74, 408
Hpy188I TCNGA 2 cut(s) 603, 703
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 3 cut(s) 34, 74, 408
HpyAV CCTTC 1 cut(s) 598
HpyCH4III ACNGT 3 cut(s) 29, 412, 568
HpyCH4V TGCA 3 cut(s) 341, 577, 818
HpyF10VI GCNNNNNNNGC 6 cut(s) 438, 479, 527, 557, 583, 614
HpyF3I CTNAG 2 cut(s) 462, 594
Hsp92I GRCGYC 2 cut(s) 617, 698
Hsp92II CATG 3 cut(s) 256, 478, 526
HspAI GCGC 2 cut(s) 432, 617
KasI GGCGCC 1 cut(s) 616
Kzo9I GATC 5 cut(s) 152, 370, 516, 718, 840
LmnI GCTCC 2 cut(s) 487, 535
Lsp1109I GCAGC 2 cut(s) 365, 573
LweI GCATC 1 cut(s) 547
MaeIII GTNAC 4 cut(s) 361, 538, 568, 679
MalI GATC 5 cut(s) 154, 372, 518, 720, 842
MboI GATC 5 cut(s) 152, 370, 516, 718, 840
MboII GAAGA 3 cut(s) 80, 478, 574
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 6 cut(s) 190, 211, 244, 273, 421, 578
MluNI TGGCCA 1 cut(s) 419
Mly113I GGCGCC 1 cut(s) 617
MmeI TCCRAC 2 cut(s) 106, 273
Mox20I TGGCCA 1 cut(s) 419
MscI TGGCCA 1 cut(s) 419
MseI TTAA 4 cut(s) 306, 735, 762, 795
MslI CAYNNNNRTG 2 cut(s) 13, 257
Msp20I TGGCCA 1 cut(s) 419
MspCI CTTAAG 1 cut(s) 734
MspI CCGG 3 cut(s) 23, 331, 626
MwoI GCNNNNNNNGC 6 cut(s) 438, 479, 527, 557, 583, 614
NarI GGCGCC 1 cut(s) 617
NdeII GATC 5 cut(s) 152, 370, 516, 718, 840
NlaIII CATG 3 cut(s) 256, 478, 526
NlaIV GGNNCC 3 cut(s) 6, 618, 809
NmeAIII GCCGAG 1 cut(s) 485
NmuCI GTSAC 4 cut(s) 361, 538, 568, 679
PflFI GACNNNGTC 1 cut(s) 29
PkrI GCNGC 2 cut(s) 355, 588
PluTI GGCGCC 1 cut(s) 620
PspFI CCCAGC 2 cut(s) 495, 551
PspN4I GGNNCC 3 cut(s) 6, 618, 809
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 3 cut(s) 4, 5, 807
PsyI GACNNNGTC 1 cut(s) 29
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 2 cut(s) 13, 257
SaqAI TTAA 4 cut(s) 306, 735, 762, 795
SatI GCNGC 2 cut(s) 354, 587
Sau3AI GATC 5 cut(s) 152, 370, 516, 718, 840
Sau96I GGNCC 3 cut(s) 4, 5, 807
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 1 cut(s) 547
SfcI CTRYAG 1 cut(s) 279
SfoI GGCGCC 1 cut(s) 618
SinI GGWCC 1 cut(s) 807
SmiMI CAYNNNNRTG 2 cut(s) 13, 257
SmlI CTYRAG 2 cut(s) 357, 734
SmoI CTYRAG 2 cut(s) 357, 734
Sse9I AATT 6 cut(s) 190, 211, 244, 273, 421, 578
SsiI CCGC 3 cut(s) 608, 674, 690
SspDI GGCGCC 1 cut(s) 616
StyI CCWWGG 1 cut(s) 803
TaaI ACNGT 3 cut(s) 29, 412, 568
TasI AATT 6 cut(s) 190, 211, 244, 273, 421, 578
TatI WGTACW 1 cut(s) 39
Tru1I TTAA 4 cut(s) 306, 735, 762, 795
Tru9I TTAA 4 cut(s) 306, 735, 762, 795
TscAI CASTG 3 cut(s) 34, 354, 384
TseFI GTSAC 4 cut(s) 361, 538, 568, 679
TseI GCWGC 2 cut(s) 353, 586
Tsp45I GTSAC 4 cut(s) 361, 538, 568, 679
TspRI CASTG 3 cut(s) 34, 354, 384
Tth111I GACNNNGTC 1 cut(s) 29
Vha464I CTTAAG 1 cut(s) 734
VpaK11BI GGWCC 1 cut(s) 807
XapI RAATTY 3 cut(s) 190, 211, 244
XcmI CCANNNNNNNNNTGG 2 cut(s) 15, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.