RchiOBHm_Chr3g0464741

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016983
Physical Location & Seq
Forward (+)
11749055 .. 11750227
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGGAAGAGAGAAAGGGATCAGCAAAATCGAACAAGGTGGCAGCTGAAAATCAGGAGAAATGGGTTTATGATTCTTCTGTGGATCATAAAGGAAATGTTCCTCTCCGAGCTTCAACTGGTGTTTGGAAAGCCTCTCTCTTTATTGTTGCCGCCTGGAGCTCATTCTCCGACCTAACCACGAGCTTTTTCTCTGACCGCCGTCAGCGTATGTCCTCTCTCTCTCTCTCTCTCTCTCCTCTGCAACAACCCTTTCACCTGACCAGCACCCGACCTCCTCTTCCTTCTTCGCCTCCGATAGGCAGCCGCCTCCTTCTCCGGCCGGCACTTGACCGCACCAGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

114

Amino Acids

12.63

Weight (kDa)

10.34

Isoelectric Point (pI)

64.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 150, 196, 304, 331
AclWI GGATC 2 cut(s) 25, 90
AcoI YGGCCR 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 1 cut(s) 114
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 4 cut(s) 44, 110, 159, 183
AluI AGCT 4 cut(s) 44, 110, 159, 183
Alw21I GWGCWC 1 cut(s) 161
AlwI GGATC 2 cut(s) 25, 90
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 2 cut(s) 41, 300
AsuHPI GGTGA 1 cut(s) 245
BanII GRGCYC 1 cut(s) 161
BauI CACGAG 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 2 cut(s) 53, 312
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 154
BisI GCNGC 4 cut(s) 42, 150, 301, 304
BlsI GCNGC 4 cut(s) 43, 151, 302, 305
Bme1390I CCNGG 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 154
BoxI GACNNNNGTC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 2 cut(s) 121, 336
BseBI CCWGG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 296
BseNI ACTGG 2 cut(s) 121, 336
BseRI GAGGAG 2 cut(s) 225, 264
BseX3I CGGCCG 1 cut(s) 317
BseXI GCAGC 2 cut(s) 53, 312
Bsh1285I CGRYCG 1 cut(s) 320
BshFI GGCC 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 2 cut(s) 316, 320
BslI CCNNNNNNNGG 1 cut(s) 296
BsnI GGCC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 2 cut(s) 17, 82
BspACI CCGC 4 cut(s) 150, 196, 304, 331
BspANI GGCC 1 cut(s) 319
BspPI GGATC 2 cut(s) 25, 90
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 2 cut(s) 121, 336
BssAI RCCGGY 1 cut(s) 319
BssMI GATC 2 cut(s) 17, 82
BssSI CACGAG 1 cut(s) 178
Bst2BI CACGAG 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 321
BstENI CCTNNNNNAGG 1 cut(s) 294
BstKTI GATC 2 cut(s) 20, 85
BstMBI GATC 2 cut(s) 17, 82
BstMCI CGRYCG 1 cut(s) 320
BstNI CCWGG 1 cut(s) 154
BstPAI GACNNNNGTC 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 53, 312
BstZI CGGCCG 1 cut(s) 317
BsuRI GGCC 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 321
Cfr10I RCCGGY 1 cut(s) 319
CviJI RGCY 7 cut(s) 44, 110, 131, 159, 183, 303, 319
CviKI_1 RGCY 7 cut(s) 44, 110, 131, 159, 183, 303, 319
DpnI GATC 2 cut(s) 19, 84
DpnII GATC 2 cut(s) 17, 82
EaeI YGGCCR 1 cut(s) 317
EagI CGGCCG 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Ecl136II GAGCTC 1 cut(s) 159
EclXI CGGCCG 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 161
Eco52I CGGCCG 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 159
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 161
FaiI YATR 3 cut(s) 69, 87, 209
Fnu4HI GCNGC 4 cut(s) 42, 150, 301, 304
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 4 cut(s) 42, 150, 301, 304
GluI GCNGC 4 cut(s) 42, 150, 301, 304
GsuI CTGGAG 1 cut(s) 175
HaeIII GGCC 1 cut(s) 319
HapII CCGG 2 cut(s) 316, 320
HinfI GANTC 1 cut(s) 71
HpaII CCGG 2 cut(s) 316, 320
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 4 cut(s) 107, 169, 193, 294
Hpy188III TCNNGA 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 291, 320
HpyCH4V TGCA 1 cut(s) 241
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
Kzo9I GATC 2 cut(s) 17, 82
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 8 cut(s) 38, 102, 139, 166, 269, 274, 329, 333
Lsp1109I GCAGC 2 cut(s) 53, 312
MalI GATC 2 cut(s) 19, 84
MboI GATC 2 cut(s) 17, 82
MboII GAAGA 4 cut(s) 17, 66, 269, 276
MhlI GDGCHC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 8 cut(s) 111, 142, 223, 246, 282, 285, 300, 317
MroNI GCCGGC 1 cut(s) 319
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 2 cut(s) 316, 320
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
NaeI GCCGGC 1 cut(s) 321
NdeII GATC 2 cut(s) 17, 82
NgoMIV GCCGGC 1 cut(s) 319
PdiI GCCGGC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 4 cut(s) 43, 151, 302, 305
PshAI GACNNNNGTC 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 44
SacI GAGCTC 1 cut(s) 161
SatI GCNGC 4 cut(s) 42, 150, 301, 304
Sau3AI GATC 2 cut(s) 17, 82
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 1 cut(s) 161
SetI ASST 8 cut(s) 39, 46, 112, 161, 174, 185, 258, 274
SsiI CCGC 4 cut(s) 150, 196, 304, 331
SstI GAGCTC 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 152
TaqI TCGA 1 cut(s) 29
TauI GCSGC 2 cut(s) 152, 306
TfiI GAWTC 1 cut(s) 71
TscAI CASTG 1 cut(s) 343
TseI GCWGC 2 cut(s) 41, 300
TspRI CASTG 1 cut(s) 343
XagI CCTNNNNNAGG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.