Rh1CG259100

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016983
Physical Location & Seq
Reverse (-)
52359728 .. 52361278
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG259100.1

Sequence Viewer

Length: 342 bp
ATGGTGGCTGTGAAGAAAACCAAGAAGACCCATGAGTCTATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAGTACACTCTGGGCTACAAGATCGTCATCGACACTCTTCGGAAGCTGATTATAATCTCGAACAATGGCCCTCCTCTGAGAAAGTCGGGGATCGAGTACTACGCGATGCTTGCCAAGGTTAGAGTTCACCACTACAATGGAAGGATGTTGGAAGCTTTATTCAGCCAGAGCGTATCAGGCAAATGTGGATCAGACCCTTTTCTTCTGAGACTGATGACAACTTACTCATGCGTGATGAGTGACACTCTTGAGACATTATGGAGGTAG

Protein Analysis

113

Amino Acids

12.84

Weight (kDa)

9.96

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 13 - 72 1.2e-06 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AasI GACNNNNNNGTC 1 cut(s) 34
AccII CGCG 1 cut(s) 179
AclWI GGATC 2 cut(s) 173, 271
AfaI GTAC 2 cut(s) 80, 173
AluBI AGCT 2 cut(s) 121, 230
AluI AGCT 2 cut(s) 121, 230
Alw26I GTCTC 2 cut(s) 277, 320
AlwI GGATC 2 cut(s) 173, 271
AoxI GGCC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 277, 320
BmcAI AGTACT 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 143
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 32
BplI GAGNNNNNCTC 2 cut(s) 304, 336
BsaBI GATNNNNATC 2 cut(s) 101, 128
BsaJI CCNNGG 1 cut(s) 189
Bse8I GATNNNNATC 2 cut(s) 101, 128
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 225
BseJI GATNNNNATC 2 cut(s) 101, 128
BseMII CTCAG 2 cut(s) 143, 272
BseRI GAGGAG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 179
BshFI GGCC 1 cut(s) 144
BsmAI GTCTC 2 cut(s) 277, 320
BsnI GGCC 1 cut(s) 144
Bsp143I GATC 3 cut(s) 96, 165, 263
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 2 cut(s) 144, 273
BspFNI CGCG 1 cut(s) 179
BspHI TCATGA 1 cut(s) 63
BspPI GGATC 2 cut(s) 173, 271
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 3 cut(s) 96, 165, 263
BssT1I CCWWGG 1 cut(s) 189
Bst6I CTCTTC 2 cut(s) 62, 117
BstC8I GCNNGC 2 cut(s) 54, 186
BstDEI CTNAG 2 cut(s) 152, 281
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 179
BstKTI GATC 3 cut(s) 99, 168, 266
BstMAI GTCTC 2 cut(s) 277, 320
BstMBI GATC 3 cut(s) 96, 165, 263
BstMWI GCNNNNNNNGC 2 cut(s) 185, 252
BstUI CGCG 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 32
BstXI CCANNNNNNTGG 1 cut(s) 212
BsuRI GGCC 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 194
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 54, 186
CciI TCATGA 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 143
Csp6I GTAC 2 cut(s) 79, 172
CviAII CATG 3 cut(s) 32, 64, 303
CviJI RGCY 7 cut(s) 8, 52, 90, 121, 144, 230, 240
CviKI_1 RGCY 7 cut(s) 8, 52, 90, 121, 144, 230, 240
CviQI GTAC 2 cut(s) 79, 172
DdeI CTNAG 2 cut(s) 152, 281
DpnI GATC 3 cut(s) 98, 167, 265
DpnII GATC 3 cut(s) 96, 165, 263
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 62, 117
EarI CTCTTC 2 cut(s) 62, 117
Eco130I CCWWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 3 cut(s) 35, 67, 306
FaiI YATR 5 cut(s) 33, 65, 128, 304, 334
FatI CATG 3 cut(s) 31, 63, 302
FokI GGATG 1 cut(s) 232
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 3 cut(s) 35, 67, 306
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 1 cut(s) 35
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 2 cut(s) 81, 202
Hpy188I TCNGA 4 cut(s) 117, 153, 268, 282
Hpy188III TCNNGA 3 cut(s) 64, 133, 323
Hpy8I GTNNAC 2 cut(s) 81, 202
HpyAV CCTTC 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 252
HpyF3I CTNAG 2 cut(s) 152, 281
Hsp92II CATG 3 cut(s) 35, 67, 306
Kzo9I GATC 3 cut(s) 96, 165, 263
LpnPI CCDG 4 cut(s) 34, 71, 237, 254
LweI GCATC 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 314
MalI GATC 3 cut(s) 98, 167, 265
MboI GATC 3 cut(s) 96, 165, 263
MboII GAAGA 5 cut(s) 25, 37, 79, 104, 269
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 3 cut(s) 156, 159, 330
MslI CAYNNNNRTG 1 cut(s) 210
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 185, 252
NdeII GATC 3 cut(s) 96, 165, 263
NlaIII CATG 3 cut(s) 35, 67, 306
NmuCI GTSAC 1 cut(s) 314
PagI TCATGA 1 cut(s) 63
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PsiI TTATAA 1 cut(s) 128
PspPI GGNCC 1 cut(s) 143
RsaI GTAC 2 cut(s) 80, 173
RsaNI GTAC 2 cut(s) 79, 172
RseI CAYNNNNRTG 1 cut(s) 210
Sau3AI GATC 3 cut(s) 96, 165, 263
Sau96I GGNCC 1 cut(s) 143
ScaI AGTACT 1 cut(s) 173
SchI GAGTC 1 cut(s) 44
SetI ASST 4 cut(s) 123, 195, 232, 341
SfaNI GCATC 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
StyI CCWWGG 1 cut(s) 189
TaqI TCGA 3 cut(s) 105, 134, 168
TatI WGTACW 2 cut(s) 78, 171
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 80
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.