Rh5AG130600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016983
Physical Location & Seq
Reverse (-)
13015110 .. 13021362
6253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG130600.1

Sequence Viewer

Length: 492 bp
ATGCCACCAACCACTGCTAAAGCTCGGAGAGCCGCCTGGAGCTCATTCTCCGACCTAACCACGAGCTTTTTCTCTGACCGCCGTCAGCGGAAGCTGATTATAATCTCGAACAATGGCCCTCCTCTGAGAAAGTCAGGGATCGAGTACTACGCGATGCTTGCCAAGAGACTCCAAAGCTTTTACAACTCTCTCCTATTAAGCCAGTGTCCTGGGCTGCCAGGCGTTGGAGGTTTGAGGCCTCTAGTTCGATCCAAGGCTACTACTTCATCGAGTGGTGGTCACACAATGTCACAAGAATTGAAGTTGCTCGTCATTGACTATGCGTCGGAGGTTCCTACGCGTCCTTGTGAGCTATCATCTAATGACCTAGATGTTGAAGGTAGGGCCGTTGCTGGATTTCTAGTAGAAAGATTCTCCGTGTCAGGTAGCGTGCGTGATCTTTGTGTGAATCTCCTAACTACACCATTCATCAAATCTACAGACTTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.84

Weight (kDa)

9.66

Isoelectric Point (pI)

57.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 224
AccII CGCG 2 cut(s) 152, 340
AciI CCGC 3 cut(s) 33, 79, 88
AclWI GGATC 2 cut(s) 146, 243
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 2 cut(s) 301, 377
AhdI GACNNNNNGTC 1 cut(s) 322
AjnI CCWGG 3 cut(s) 35, 208, 217
AluBI AGCT 6 cut(s) 23, 42, 66, 94, 177, 352
AluI AGCT 6 cut(s) 23, 42, 66, 94, 177, 352
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 2 cut(s) 146, 243
AoxI GGCC 3 cut(s) 115, 236, 384
ApeKI GCWGC 1 cut(s) 214
AspS9I GGNCC 2 cut(s) 116, 384
BanII GRGCYC 1 cut(s) 44
BauI CACGAG 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 201
BceAI ACGGC 2 cut(s) 66, 371
BciT130I CCWGG 3 cut(s) 37, 210, 219
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 3 cut(s) 242, 368, 401
BfmI CTRYAG 1 cut(s) 477
BisI GCNGC 2 cut(s) 33, 215
BlsI GCNGC 2 cut(s) 34, 216
BmcAI AGTACT 1 cut(s) 146
Bme1390I CCNGG 3 cut(s) 37, 210, 219
BmeRI GACNNNNNGTC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 116, 384
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 3 cut(s) 37, 210, 219
BmsI GCATC 1 cut(s) 144
BoxI GACNNNNGTC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 209, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 202
Bse8I GATNNNNATC 1 cut(s) 101
BseBI CCWGG 3 cut(s) 37, 210, 219
BseDI CCNNGG 2 cut(s) 209, 252
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 201
Bsh1236I CGCG 2 cut(s) 152, 340
BshFI GGCC 3 cut(s) 117, 238, 386
BsiHKAI GWGCWC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 160
BsnI GGCC 3 cut(s) 117, 238, 386
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 3 cut(s) 138, 248, 436
BspACI CCGC 3 cut(s) 33, 79, 88
BspANI GGCC 3 cut(s) 117, 238, 386
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 2 cut(s) 152, 340
BspLI GGNNCC 1 cut(s) 333
BspPI GGATC 2 cut(s) 146, 243
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 2 cut(s) 209, 252
BssMI GATC 3 cut(s) 138, 248, 436
BssSI CACGAG 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 61
Bst2UI CCWGG 3 cut(s) 37, 210, 219
BstC8I GCNNGC 2 cut(s) 159, 431
BstDEI CTNAG 1 cut(s) 125
BstFNI CGCG 2 cut(s) 152, 340
BstKTI GATC 3 cut(s) 141, 251, 439
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 3 cut(s) 138, 248, 436
BstMWI GCNNNNNNNGC 2 cut(s) 29, 158
BstNI CCWGG 3 cut(s) 37, 210, 219
BstPAI GACNNNNGTC 1 cut(s) 81
BstSCI CCNGG 3 cut(s) 35, 208, 217
BstSFI CTRYAG 1 cut(s) 477
BstUI CGCG 2 cut(s) 152, 340
BstV1I GCAGC 1 cut(s) 201
BstXI CCANNNNNNTGG 1 cut(s) 209
BsuRI GGCC 3 cut(s) 117, 238, 386
BtgZI GCGATG 1 cut(s) 167
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 209
Cac8I GCNNGC 2 cut(s) 159, 431
Cfr13I GGNCC 2 cut(s) 116, 384
CseI GACGC 2 cut(s) 312, 329
Csp6I GTAC 1 cut(s) 145
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 125
DpnI GATC 3 cut(s) 140, 250, 438
DpnII GATC 3 cut(s) 138, 248, 436
DriI GACNNNNNGTC 1 cut(s) 322
Eam1105I GACNNNNNGTC 1 cut(s) 322
Ecl136II GAGCTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 252
Eco147I AGGCCT 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 42
EcoRII CCWGG 3 cut(s) 35, 208, 217
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 252
FaiI YATR 2 cut(s) 101, 321
Fnu4HI GCNGC 2 cut(s) 33, 215
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 33, 215
FspBI CTAG 3 cut(s) 242, 368, 401
GluI GCNGC 2 cut(s) 33, 215
GsuI CTGGAG 1 cut(s) 58
HaeIII GGCC 3 cut(s) 117, 238, 386
HgaI GACGC 2 cut(s) 312, 329
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 3 cut(s) 168, 411, 448
Hpy188I TCNGA 6 cut(s) 27, 52, 76, 126, 328, 491
Hpy188III TCNNGA 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 158
HpyF3I CTNAG 1 cut(s) 125
Kzo9I GATC 3 cut(s) 138, 248, 436
LmnI GCTCC 1 cut(s) 39
Lsp1109I GCAGC 1 cut(s) 201
LweI GCATC 1 cut(s) 144
MaeI CTAG 3 cut(s) 242, 368, 401
MaeIII GTNAC 2 cut(s) 278, 288
MalI GATC 3 cut(s) 140, 250, 438
MboI GATC 3 cut(s) 138, 248, 436
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 1 cut(s) 296
MluI ACGCGT 1 cut(s) 338
MlyI GAGTC 1 cut(s) 162
MmeI TCCRAC 3 cut(s) 75, 205, 306
MnlI CCTC 6 cut(s) 129, 132, 221, 228, 249, 322
MseI TTAA 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 88
MspR9I CCNGG 3 cut(s) 37, 210, 219
MvaI CCWGG 3 cut(s) 37, 210, 219
MvnI CGCG 2 cut(s) 152, 340
MwoI GCNNNNNNNGC 2 cut(s) 29, 158
NdeII GATC 3 cut(s) 138, 248, 436
NlaIV GGNNCC 1 cut(s) 333
NmuCI GTSAC 2 cut(s) 278, 288
PceI AGGCCT 1 cut(s) 238
PfeI GAWTC 2 cut(s) 411, 448
PflFI GACNNNGTC 1 cut(s) 485
PflMI CCANNNNNTGG 1 cut(s) 224
PkrI GCNGC 2 cut(s) 34, 216
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PshAI GACNNNNGTC 1 cut(s) 81
PsiI TTATAA 1 cut(s) 101
Psp124BI GAGCTC 1 cut(s) 44
Psp6I CCWGG 3 cut(s) 35, 208, 217
PspGI CCWGG 3 cut(s) 35, 208, 217
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 2 cut(s) 116, 384
PsyI GACNNNGTC 1 cut(s) 485
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SacI GAGCTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 2 cut(s) 33, 215
Sau3AI GATC 3 cut(s) 138, 248, 436
Sau96I GGNCC 2 cut(s) 116, 384
ScaI AGTACT 1 cut(s) 146
SchI GAGTC 1 cut(s) 162
ScrFI CCNGG 3 cut(s) 37, 210, 219
SduI GDGCHC 1 cut(s) 44
SfaNI GCATC 1 cut(s) 144
SfcI CTRYAG 1 cut(s) 477
Sse9I AATT 1 cut(s) 296
SseBI AGGCCT 1 cut(s) 238
SsiI CCGC 3 cut(s) 33, 79, 88
SspMI CTAG 3 cut(s) 242, 368, 401
SstI GAGCTC 1 cut(s) 44
StuI AGGCCT 1 cut(s) 238
StyD4I CCNGG 3 cut(s) 35, 208, 217
StyI CCWWGG 1 cut(s) 252
TaqI TCGA 4 cut(s) 107, 141, 247, 269
TasI AATT 1 cut(s) 296
TatI WGTACW 1 cut(s) 144
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 2 cut(s) 411, 448
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 2 cut(s) 19, 209
TseFI GTSAC 2 cut(s) 278, 288
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 2 cut(s) 278, 288
TspDTI ATGAA 2 cut(s) 255, 457
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 2 cut(s) 19, 209
Tth111I GACNNNGTC 1 cut(s) 485
Van91I CCANNNNNTGG 1 cut(s) 224
XspI CTAG 3 cut(s) 242, 368, 401
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.