Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016983

Physical Location & Seq

Genomic Coordinates Reverse (-)

41338982 .. 41343543

Gene Structure 4562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTTGGCTCCCTCCACCCGATGTTGGGCTTCCAAGCTCCTTTCTTGGGTGGAACCGATGGCCTCACGTCGGGCTTCCTCCACCTCGATGTTGGGCTTCCACCACCTCCGGTTGGCGGAGCTCTATGGAAAGGACTATGCATTTTGGCATAGCTTTCGCAGAGAAGAGAAAGTTGAAGTCCCCCCTCGCCCTTGTGAAGGCCGGATTCATCACTCTTGGCATATCAAGGAAATCTTTAAAGAGGATATAAGGGTGCATGTGATCATACTTTATGATAAGACAAATAAGCCGCTGTGCGTTGGAGGTTCGAGGCCTCTAGTTCGATCCAATGCTGCTACTTCATCGAGTGGTGGTCGCACAATGTCACGAGAATTGAAGTTGCTCGTCATTGAATATGCGTCGGAGGTTCCTACGCGTTCTTGTGAGCTATCATCTAATGACCCGGATGTTGAAGTGTTCGCCAAACCATCAAAGTGTTTGTCTTTGCGACGTTGGTCACCATTGGTCTCCTCATCGGTGAAGGTGGAAGTCGAGGTTTTTAGTGGCAAGGGTTGCGTACTTCTCCTCTATTCCTTGCAAGCATGGTATACTCAACCTTGTGCTCCTCCTCGTAGGTGGATGTCCACCCTTGCCCAATTTGTCATTGTTTCATCTTTCATTCGTAGTCGTAGGCTTCCTCCACCTAATGTTGGGCTTCCAAGCTCCTTTCTTGGGTGGAACCGTTGGCCTCACGTCGGGCTTCCTTCACCCGATGTTGGGCTTCCAAGCTCCTTTCTTGGGCGGAACCGATGGCCTCACGTCGGGCTTCCTCCACCTAATGTTGGGCTTCCAAGCTCCTTGTTAGGTGAAACCGATAGTCTCGTCTCGGACTTCCTTCGCCCGATGTTGGGCTCCCTCCACCCGATGTTGGGCTTCCAAGCTCCTTTCTTGGGTGGAACCGATGGCCTCACGTCGGGCTTCCTCCACCGATGTTGGGCTTCCACCACCTCCGCTGGCGGAGCACTATGGAAAAGACTATGCATTTTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

343

Amino Acids

38.18

Weight (kDa)

9.7

Isoelectric Point (pI)

69.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016983)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0123311 RchiOBHm_Chr3g0464741 RchiOBHm_Chr3g0464751
rosa_roxburghii	Rroxscaffold_4G00290860 Rroxscaffold_6G00419990
rosa_samantha	Rh1CG259100 Rh3BG055800 Rh3BG136300 Rh3CG138900 Rh3DG137800 Rh4CG123200 Rh5AG130600 Rh5BG543600 Rh6AG286100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	587
AccII	CGCG	1 cut(s)	415
AciI	CCGC	5 cut(s)	116, 290, 781, 990, 996
AclWI	GGATC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	558
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	4 cut(s)	176, 376, 392, 452
AjiI	CACGTC	4 cut(s)	68, 733, 799, 951
AluBI	AGCT	8 cut(s)	37, 121, 153, 427, 702, 768, 834, 920
AluI	AGCT	8 cut(s)	37, 121, 153, 427, 702, 768, 834, 920
Alw21I	GWGCWC	3 cut(s)	123, 604, 1003
Alw26I	GTCTC	3 cut(s)	511, 863, 868
AlwI	GGATC	1 cut(s)	318
AoxI	GGCC	6 cut(s)	60, 199, 311, 725, 791, 943
ApeKI	GCWGC	1 cut(s)	332
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	4 cut(s)	489, 529, 738, 857
BanII	GRGCYC	2 cut(s)	123, 893
BauI	CACGAG	1 cut(s)	366
Bbv12I	GWGCWC	3 cut(s)	123, 604, 1003
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	4 cut(s)	52, 475, 783, 935
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BclI	TGATCA	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	3 cut(s)	511, 863, 868
BfaI	CTAG	1 cut(s)	317
BisI	GCNGC	2 cut(s)	290, 333
BlsI	GCNGC	2 cut(s)	291, 334
Bme1390I	CCNGG	1 cut(s)	443
BmgBI	CACGTC	4 cut(s)	68, 733, 799, 951
BmiI	GGNNCC	7 cut(s)	9, 54, 408, 719, 785, 892, 937
BmrFI	CCNGG	1 cut(s)	443
BoxI	GACNNNNGTC	1 cut(s)	493
BpuMI	CCSGG	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	511
BsaWI	WCCGGW	1 cut(s)	108
BseGI	GGATG	2 cut(s)	451, 624
BseRI	GAGGAG	4 cut(s)	499, 554, 594, 597
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	415
BshFI	GGCC	6 cut(s)	62, 201, 313, 727, 793, 945
BsiHKAI	GWGCWC	3 cut(s)	123, 604, 1003
BsiSI	CCGG	3 cut(s)	109, 202, 443
BslFI	GGGAC	1 cut(s)	164
BsmAI	GTCTC	3 cut(s)	511, 863, 868
BsmBI	CGTCTC	1 cut(s)	868
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	6 cut(s)	62, 201, 313, 727, 793, 945
Bso31I	GGTCTC	1 cut(s)	511
Bsp1286I	GDGCHC	4 cut(s)	123, 604, 893, 1003
Bsp143I	GATC	2 cut(s)	261, 323
BspACI	CCGC	5 cut(s)	116, 290, 781, 990, 996
BspANI	GGCC	6 cut(s)	62, 201, 313, 727, 793, 945
BspFNI	CGCG	1 cut(s)	415
BspLI	GGNNCC	7 cut(s)	9, 54, 408, 719, 785, 892, 937
BspPI	GGATC	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	511
BssMI	GATC	2 cut(s)	261, 323
BssNAI	GTATAC	1 cut(s)	588
BssSI	CACGAG	1 cut(s)	366
Bst1107I	GTATAC	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	722
Bst6I	CTCTTC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	552
BstC8I	GCNNGC	2 cut(s)	579, 994
BstEII	GGTNACC	1 cut(s)	495
BstENI	CCTNNNNNAGG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	451, 624
BstFNI	CGCG	1 cut(s)	415
BstKTI	GATC	2 cut(s)	264, 326
BstMAI	GTCTC	3 cut(s)	511, 863, 868
BstMBI	GATC	2 cut(s)	261, 323
BstMWI	GCNNNNNNNGC	2 cut(s)	552, 998
BstNSI	RCATGY	1 cut(s)	260
BstPAI	GACNNNNGTC	1 cut(s)	493
BstPI	GGTNACC	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	441
BstUI	CGCG	1 cut(s)	415
BstV1I	GCAGC	1 cut(s)	319
BstZ17I	GTATAC	1 cut(s)	588
BsuRI	GGCC	6 cut(s)	62, 201, 313, 727, 793, 945
BtrI	CACGTC	4 cut(s)	68, 733, 799, 951
BtsCI	GGATG	2 cut(s)	451, 624
Cac8I	GCNNGC	2 cut(s)	579, 994
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	557
CspCI	CAANNNNNGTGG	2 cut(s)	953, 988
CviAII	CATG	2 cut(s)	257, 582
CviQI	GTAC	1 cut(s)	557
DpnI	GATC	2 cut(s)	263, 325
DpnII	GATC	2 cut(s)	261, 323
DraI	TTTAAA	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EciI	GGCGGA	3 cut(s)	131, 796, 1011
Ecl136II	GAGCTC	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	313
Eco24I	GRGCYC	2 cut(s)	123, 893
Eco31I	GGTCTC	1 cut(s)	511
Eco53kI	GAGCTC	1 cut(s)	121
Eco91I	GGTNACC	1 cut(s)	495
EcoICRI	GAGCTC	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	195
EcoO65I	GGTNACC	1 cut(s)	495
EcoT22I	ATGCAT	2 cut(s)	142, 1022
EcoT38I	GRGCYC	2 cut(s)	123, 893
Esp3I	CGTCTC	1 cut(s)	868
FaeI	CATG	2 cut(s)	260, 585
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	2 cut(s)	256, 581
FbaI	TGATCA	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	587
Fnu4HI	GCNGC	2 cut(s)	290, 333
FokI	GGATG	2 cut(s)	458, 631
FriOI	GRGCYC	2 cut(s)	123, 893
Fsp4HI	GCNGC	2 cut(s)	290, 333
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	2 cut(s)	290, 333
HaeIII	GGCC	6 cut(s)	62, 201, 313, 727, 793, 945
HapII	CCGG	3 cut(s)	109, 202, 443
HgaI	GACGC	1 cut(s)	387
Hin1II	CATG	2 cut(s)	260, 585
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	3 cut(s)	109, 202, 443
HphI	GGTGA	4 cut(s)	489, 529, 738, 857
Hpy166II	GTNNAC	2 cut(s)	588, 624
Hpy188I	TCNGA	2 cut(s)	403, 868
Hpy188III	TCNNGA	1 cut(s)	366
Hpy8I	GTNNAC	2 cut(s)	588, 624
Hpy99I	CGWCG	6 cut(s)	72, 403, 492, 737, 803, 955
HpyAV	CCTTC	4 cut(s)	191, 514, 753, 884
HpyCH4III	ACNGT	1 cut(s)	722
HpyCH4IV	ACGT	5 cut(s)	67, 490, 732, 798, 950
HpyCH4V	TGCA	4 cut(s)	140, 256, 577, 1020
HpyF10VI	GCNNNNNNNGC	2 cut(s)	552, 998
HpySE526I	ACGT	5 cut(s)	67, 490, 732, 798, 950
Hsp92II	CATG	2 cut(s)	260, 585
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	261, 323
LpnPI	CCDG	4 cut(s)	122, 215, 456, 978
Lsp1109I	GCAGC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	5 cut(s)	67, 490, 732, 798, 950
MaeIII	GTNAC	2 cut(s)	363, 495
MalI	GATC	2 cut(s)	263, 325
MboI	GATC	2 cut(s)	261, 323
MboII	GAAGA	1 cut(s)	176
MhlI	GDGCHC	4 cut(s)	123, 604, 893, 1003
MluCI	AATT	2 cut(s)	371, 635
MluI	ACGCGT	1 cut(s)	413
MmeI	TCCRAC	2 cut(s)	280, 381
Mph1103I	ATGCAT	2 cut(s)	142, 1022
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	2 cut(s)	86, 472
MspA1I	CMGCKG	2 cut(s)	292, 992
MspI	CCGG	3 cut(s)	109, 202, 443
MspR9I	CCNGG	1 cut(s)	443
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	2 cut(s)	552, 998
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	2 cut(s)	261, 323
NlaIII	CATG	2 cut(s)	260, 585
NlaIV	GGNNCC	7 cut(s)	9, 54, 408, 719, 785, 892, 937
NmuCI	GTSAC	2 cut(s)	363, 495
NsiI	ATGCAT	2 cut(s)	142, 1022
NspI	RCATGY	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	291, 334
PshAI	GACNNNNGTC	1 cut(s)	493
Psp124BI	GAGCTC	1 cut(s)	123
PspEI	GGTNACC	1 cut(s)	495
PspN4I	GGNNCC	7 cut(s)	9, 54, 408, 719, 785, 892, 937
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
RseI	CAYNNNNRTG	2 cut(s)	86, 472
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	2 cut(s)	290, 333
Sau3AI	GATC	2 cut(s)	261, 323
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	4 cut(s)	123, 604, 893, 1003
SmiMI	CAYNNNNRTG	2 cut(s)	86, 472
Sse9I	AATT	2 cut(s)	371, 635
SseBI	AGGCCT	1 cut(s)	313
SsiI	CCGC	5 cut(s)	116, 290, 781, 990, 996
SspMI	CTAG	1 cut(s)	317
SstI	GAGCTC	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	722
TaiI	ACGT	5 cut(s)	70, 493, 735, 801, 953
TaqI	TCGA	5 cut(s)	86, 308, 322, 344, 531
TasI	AATT	2 cut(s)	371, 635
TauI	GCSGC	1 cut(s)	292
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	363, 495
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	2 cut(s)	363, 495
TspDTI	ATGAA	4 cut(s)	197, 330, 639, 646
XagI	CCTNNNNNAGG	1 cut(s)	195
XceI	RCATGY	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	587
XspI	CTAG	1 cut(s)	317
Zsp2I	ATGCAT	2 cut(s)	142, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.