Rh3CG138900

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0016983
Physical Location & Seq
Forward (+)
11408613 .. 11413233
4621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG138900.1

Sequence Viewer

Length: 411 bp
ATGGAAGAGAGAAAGGGATCAGCAAAATCGAACAAGGTGGCAGCTGAAAATCAGGAGAAATGGGTTTATGATTCTTCTGTGGATCATAAAGGAAATGTTCCTCTCCGAGCTTCAACTGGTGTTTGGAAAGCCTCTCTCTTTATTGTTGCTCGGAGAGCCGCCTGGAGCTCATTCTCCGACCTAACCACGAGCTTTTTCTCTGACCGCCGTCAGCGGAAGCTGATTATAATCTCGAACAATGGCCCTCCTCTGAGAAAGTCGGGGATCGAGTACTACGCGATGCTTGCCAAGGTTAGAGTTCACCACTATAATGGAAGGATGTTGGAAGCTTTATTCAGCCAGAGCGTATCAGGCAAATGTGGATCAGACCCTTTTCTTCTGAGACTGCAATTGAGTTCAGTGAGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

136

Amino Acids

15.28

Weight (kDa)

10.24

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
AccII CGCG 1 cut(s) 278
AciI CCGC 3 cut(s) 159, 205, 214
AclWI GGATC 4 cut(s) 25, 90, 272, 370
AfaI GTAC 1 cut(s) 272
AgsI TTSAA 1 cut(s) 114
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 6 cut(s) 44, 110, 168, 192, 220, 329
AluI AGCT 6 cut(s) 44, 110, 168, 192, 220, 329
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 4 cut(s) 25, 90, 272, 370
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 293
BanII GRGCYC 1 cut(s) 170
BauI CACGAG 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 376
BisI GCNGC 2 cut(s) 42, 159
BlsI GCNGC 2 cut(s) 43, 160
BmcAI AGTACT 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 270
BoxI GACNNNNGTC 1 cut(s) 207
BpmI CTGGAG 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 227
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 324
BseJI GATNNNNATC 1 cut(s) 227
BseMII CTCAG 2 cut(s) 242, 371
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 278
BshFI GGCC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 376
BsnI GGCC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 4 cut(s) 17, 82, 264, 362
BspACI CCGC 3 cut(s) 159, 205, 214
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 2 cut(s) 243, 372
BspFNI CGCG 1 cut(s) 278
BspPI GGATC 4 cut(s) 25, 90, 272, 370
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 4 cut(s) 17, 82, 264, 362
BssSI CACGAG 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 251, 380
BstF5I GGATG 1 cut(s) 324
BstFNI CGCG 1 cut(s) 278
BstKTI GATC 4 cut(s) 20, 85, 267, 365
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 4 cut(s) 17, 82, 264, 362
BstMWI GCNNNNNNNGC 3 cut(s) 155, 284, 351
BstNI CCWGG 1 cut(s) 163
BstPAI GACNNNNGTC 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 161
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 53
BstXI CCANNNNNNTGG 1 cut(s) 311
BsuRI GGCC 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 293
BtsCI GGATG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 271
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 2 cut(s) 251, 380
DpnI GATC 4 cut(s) 19, 84, 266, 364
DpnII GATC 4 cut(s) 17, 82, 264, 362
Ecl136II GAGCTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 288
FaiI YATR 4 cut(s) 69, 87, 227, 309
Fnu4HI GCNGC 2 cut(s) 42, 159
FokI GGATG 1 cut(s) 331
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 42, 159
GluI GCNGC 2 cut(s) 42, 159
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 1 cut(s) 71
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 7 cut(s) 107, 153, 178, 202, 252, 367, 381
Hpy188III TCNNGA 2 cut(s) 53, 232
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 309
HpyCH4V TGCA 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 284, 351
HpyF3I CTNAG 2 cut(s) 251, 380
Kzo9I GATC 4 cut(s) 17, 82, 264, 362
LmnI GCTCC 1 cut(s) 165
LpnPI CCDG 6 cut(s) 38, 102, 148, 175, 336, 353
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 270
MalI GATC 4 cut(s) 19, 84, 266, 364
MboI GATC 4 cut(s) 17, 82, 264, 362
MboII GAAGA 3 cut(s) 17, 66, 368
MfeI CAATTG 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 389
MmeI TCCRAC 2 cut(s) 201, 303
MnlI CCTC 5 cut(s) 111, 142, 255, 258, 398
MslI CAYNNNNRTG 1 cut(s) 309
MspA1I CMGCKG 2 cut(s) 44, 214
MspR9I CCNGG 1 cut(s) 163
MunI CAATTG 1 cut(s) 389
MvaI CCWGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 3 cut(s) 155, 284, 351
NdeII GATC 4 cut(s) 17, 82, 264, 362
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 43, 160
PshAI GACNNNNGTC 1 cut(s) 207
PsiI TTATAA 1 cut(s) 227
Psp124BI GAGCTC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspPI GGNCC 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 309
SacI GAGCTC 1 cut(s) 170
SatI GCNGC 2 cut(s) 42, 159
Sau3AI GATC 4 cut(s) 17, 82, 264, 362
Sau96I GGNCC 1 cut(s) 242
ScaI AGTACT 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 170
SetI ASST 9 cut(s) 39, 46, 112, 170, 183, 194, 222, 294, 331
SfaNI GCATC 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 309
Sse9I AATT 1 cut(s) 389
SsiI CCGC 3 cut(s) 159, 205, 214
SstI GAGCTC 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 1 cut(s) 288
TaqI TCGA 3 cut(s) 29, 233, 267
TasI AATT 1 cut(s) 389
TatI WGTACW 1 cut(s) 270
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 1 cut(s) 71
TscAI CASTG 1 cut(s) 405
TseI GCWGC 1 cut(s) 41
TspRI CASTG 1 cut(s) 405
ZrmI AGTACT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.