Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0016983

Physical Location & Seq

Genomic Coordinates Reverse (-)

3827183 .. 3827566

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG055800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGACAAGTGGTCTTGTCGTCAGGCATTTGGCGATAACTTTTTCACTCTTCCTAGCGACTCCAAAGCTTTTACAACTCTCTCCTATTACGCCAGTGTCCTGGGCTGCCAGGCGTTGGAGGTTCAAGGCCTCTTAGTTCGATCCAAGGTTGCTACTTCATCGAGTGGTGGTCGCACAATGTCACGAGAATTGAAGTTGCTTGTCATTGACTATGCATCGGAGGTTCCTACGCGTCCTTGTGAGCTATCATCTAATGACCTGGATGTTGAAGGTAGGGCCGTTGCTGGATTTCTAGTAGAAAGATTCTCTGTGTTAGGTAGCGTGCATGATCTTTGTGTGAATCTCCTGACTATACCATTCATCAAATCTACAGACTTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.89

Weight (kDa)

5.3

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016983)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0123311 RchiOBHm_Chr3g0464741 RchiOBHm_Chr3g0464751
rosa_roxburghii	Rroxscaffold_4G00290860 Rroxscaffold_6G00419990
rosa_samantha	Rh1CG259100 Rh3BG055800 Rh3BG136300 Rh3CG138900 Rh3DG137800 Rh4CG123200 Rh5AG130600 Rh5BG543600 Rh6AG286100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	115
AccII	CGCG	1 cut(s)	232
AclWI	GGATC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflIII	ACRYGT	1 cut(s)	230
AgsI	TTSAA	3 cut(s)	125, 193, 269
AhdI	GACNNNNNGTC	1 cut(s)	10
AjnI	CCWGG	3 cut(s)	99, 108, 258
AluBI	AGCT	2 cut(s)	68, 244
AluI	AGCT	2 cut(s)	68, 244
AlwI	GGATC	1 cut(s)	135
AoxI	GGCC	2 cut(s)	127, 276
ApeKI	GCWGC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	276
BauI	CACGAG	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	263
BciT130I	CCWGG	3 cut(s)	101, 110, 260
BfaI	CTAG	2 cut(s)	54, 293
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	3 cut(s)	101, 110, 260
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	3 cut(s)	101, 110, 260
BmsI	GCATC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	100, 144
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	93
BseBI	CCWGG	3 cut(s)	101, 110, 260
BseDI	CCNNGG	2 cut(s)	100, 144
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	129, 278
BslI	CCNNNNNNNGG	1 cut(s)	115
BsnI	GGCC	2 cut(s)	129, 278
Bsp143I	GATC	2 cut(s)	140, 328
BspANI	GGCC	2 cut(s)	129, 278
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	100, 144
BssMI	GATC	2 cut(s)	140, 328
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	3 cut(s)	101, 110, 260
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	133
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	232
BstKTI	GATC	2 cut(s)	143, 331
BstMBI	GATC	2 cut(s)	140, 328
BstNI	CCWGG	3 cut(s)	101, 110, 260
BstSCI	CCNGG	3 cut(s)	99, 108, 258
BstSFI	CTRYAG	1 cut(s)	369
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	92
BstXI	CCANNNNNNTGG	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	129, 278
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	276
CseI	GACGC	1 cut(s)	221
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	5 cut(s)	68, 105, 129, 244, 278
CviKI_1	RGCY	5 cut(s)	68, 105, 129, 244, 278
DdeI	CTNAG	1 cut(s)	133
DpnI	GATC	2 cut(s)	142, 330
DpnII	GATC	2 cut(s)	140, 328
DriI	GACNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	54
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	129
EcoRII	CCWGG	3 cut(s)	99, 108, 258
EcoT14I	CCWWGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	329
FaiI	YATR	3 cut(s)	213, 327, 353
FatI	CATG	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	2 cut(s)	54, 293
GluI	GCNGC	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	129, 278
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	3 cut(s)	59, 303, 340
Hpy188I	TCNGA	2 cut(s)	220, 383
Hpy188III	TCNNGA	2 cut(s)	183, 346
HpyAV	CCTTC	1 cut(s)	263
HpyCH4V	TGCA	2 cut(s)	215, 325
HpyF3I	CTNAG	1 cut(s)	133
Hsp92II	CATG	1 cut(s)	329
Kzo9I	GATC	2 cut(s)	140, 328
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	2 cut(s)	54, 293
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	2 cut(s)	142, 330
MboI	GATC	2 cut(s)	140, 328
MboII	GAAGA	1 cut(s)	41
MluCI	AATT	1 cut(s)	188
MluI	ACGCGT	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	3 cut(s)	112, 140, 214
Mph1103I	ATGCAT	1 cut(s)	217
MspR9I	CCNGG	3 cut(s)	101, 110, 260
MvaI	CCWGG	3 cut(s)	101, 110, 260
MvnI	CGCG	1 cut(s)	232
NdeII	GATC	2 cut(s)	140, 328
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	180
NsiI	ATGCAT	1 cut(s)	217
PceI	AGGCCT	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	303, 340
PflFI	GACNNNGTC	1 cut(s)	377
PflMI	CCANNNNNTGG	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp6I	CCWGG	3 cut(s)	99, 108, 258
PspGI	CCWGG	3 cut(s)	99, 108, 258
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	276
PsyI	GACNNNGTC	1 cut(s)	377
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	2 cut(s)	140, 328
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	3 cut(s)	101, 110, 260
SetI	ASST	8 cut(s)	70, 123, 150, 225, 246, 261, 274, 319
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	1 cut(s)	369
Sse9I	AATT	1 cut(s)	188
SseBI	AGGCCT	1 cut(s)	129
SspMI	CTAG	2 cut(s)	54, 293
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	3 cut(s)	99, 108, 258
StyI	CCWWGG	1 cut(s)	144
TaqI	TCGA	2 cut(s)	139, 161
TasI	AATT	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	303, 340
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	1 cut(s)	105
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	2 cut(s)	147, 349
TspRI	CASTG	1 cut(s)	100
Tth111I	GACNNNGTC	1 cut(s)	377
Van91I	CCANNNNNTGG	1 cut(s)	115
XspI	CTAG	2 cut(s)	54, 293
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.