RchiOBHm_Chr3g0465061

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011985
Physical Location & Seq
Forward (+)
11956050 .. 11958927
2878 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 630 bp
ATGGATTGGGGCAACGTCACGGCGGAGGATCTGGTCGACGCGCTCCGCGAAGTGGACTGGTCGTCTCCGCCGCGCCCTTTCTCGGAATTCTTCTCCAGGTTCACAGTCCCCAGATCCTCTTCCAAATGGAACAGCCGCCTCAAATGCAATCTCTACTACTACAGAACCAACTACTTCCTTTTGATTGTTACGATTCTCGGCTTGGCTTTTCTAACGAGGCCTCTTGCAATTGTGGCTGCCTTTCTGACGGCACTCAGCATTGCTTTTCTGAATGACAGCTTTGCAGGTACTTTTAGTGAGAAAGTTACAAGATCTGTGAGGCAATTCTCTCCACATTTAGCTGCAAAGATGAGACCTCCTCTTACGCCTGTAATTCGTGGACGTCCTTCAGCCAAGAGAGCAATATTCATATGTGGTCGGCCTCGTTGGGTGTTTGTCTTGATATTCTCTTCTGTGAGTTTCATCCTGTGGCTTGTTTCCTGTGGTCTCTTAATTGTCTCATGGGCACTCTCCTTCGGACTTCTTGCCACTTTACTGCATGCAAGCTTCAGGACACCCAACTTGAAAGCACGTCTGAACACATTCCGCGAGGAATTTCGTCAAGTTTGGCGCAACTATAGTGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 PRA1

Protein Analysis

209

Amino Acids

24.01

Weight (kDa)

10.69

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 20 - 192 4.8e-36 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11397 AT5G02040 AT5G02040 AT5G05987
fragaria_vesca FvH4_6g12950
malus_domestica MD04G1136600.v1.1 MD12G1150900.v1.1
prunus_persica Prupe.6G262800_v2.0.a1 Prupe.6G262800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0465061
rosa_laevigata RLG00000024659
rosa_multiflora Rmu_sc0004362.1_g000018
rosa_roxburghii Rroxscaffold_6G00415290
rosa_rugosa Rorug03G0075000
rosa_samantha Rh3BG138500 Rh3CG140900 Rh3CG149200 Rh3DG140000
rosa_wichuraiana Rw3G011330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 385
Acc36I ACCTGC 1 cut(s) 275
AccI GTMKAC 1 cut(s) 36
AccII CGCG 4 cut(s) 41, 48, 73, 588
AciI CCGC 6 cut(s) 23, 46, 68, 71, 136, 586
AclWI GGATC 2 cut(s) 36, 108
AcsI RAATTY 2 cut(s) 86, 593
AcuI CTGAAG 2 cut(s) 372, 532
AcyI GRCGYC 1 cut(s) 382
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 2 cut(s) 52, 82
AgsI TTSAA 1 cut(s) 565
AhdI GACNNNNNGTC 1 cut(s) 61
AjiI CACGTC 1 cut(s) 572
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 4 cut(s) 279, 341, 546, 625
AluI AGCT 4 cut(s) 279, 341, 546, 625
Alw26I GTCTC 4 cut(s) 69, 346, 491, 502
AlwI GGATC 2 cut(s) 36, 108
AoxI GGCC 2 cut(s) 218, 419
ApeKI GCWGC 2 cut(s) 236, 341
ApoI RAATTY 2 cut(s) 86, 593
Asp700I GAANNNNTTC 1 cut(s) 581
AspLEI GCGC 3 cut(s) 43, 75, 612
BaeGI GKGCMC 1 cut(s) 508
BbvI GCAGC 2 cut(s) 223, 328
BceAI ACGGC 2 cut(s) 36, 264
BciT130I CCWGG 1 cut(s) 97
BcoDI GTCTC 4 cut(s) 69, 346, 491, 502
BfmI CTRYAG 2 cut(s) 160, 616
BfuAI ACCTGC 1 cut(s) 275
BglII AGATCT 1 cut(s) 311
BisI GCNGC 4 cut(s) 71, 136, 237, 342
BlsI GCNGC 4 cut(s) 72, 137, 238, 343
Bme1390I CCNGG 1 cut(s) 97
BmeRI GACNNNNNGTC 1 cut(s) 61
BmgBI CACGTC 1 cut(s) 572
BmrFI CCNGG 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpmI CTGGAG 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 382
BsaI GGTCTC 2 cut(s) 346, 491
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 82
Bse1I ACTGG 1 cut(s) 62
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 462
BseLI CCNNNNNNNGG 2 cut(s) 52, 82
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 348
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 2 cut(s) 223, 328
Bsh1236I CGCG 4 cut(s) 41, 48, 73, 588
BshFI GGCC 2 cut(s) 220, 421
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 52, 82
BsmAI GTCTC 4 cut(s) 69, 346, 491, 502
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 2 cut(s) 220, 421
Bso31I GGTCTC 2 cut(s) 346, 491
Bsp1286I GDGCHC 1 cut(s) 508
Bsp143I GATC 3 cut(s) 28, 113, 311
BspACI CCGC 6 cut(s) 23, 46, 68, 71, 136, 586
BspANI GGCC 2 cut(s) 220, 421
BspCNI CTCAG 1 cut(s) 267
BspFNI CGCG 4 cut(s) 41, 48, 73, 588
BspMI ACCTGC 1 cut(s) 275
BspPI GGATC 2 cut(s) 36, 108
BspTNI GGTCTC 2 cut(s) 346, 491
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 1 cut(s) 62
BssMI GATC 3 cut(s) 28, 113, 311
BssNI GRCGYC 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 124, 454
BstACI GRCGYC 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 540, 544
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 462
BstFNI CGCG 4 cut(s) 41, 48, 73, 588
BstHHI GCGC 3 cut(s) 43, 75, 612
BstKTI GATC 3 cut(s) 31, 116, 314
BstMAI GTCTC 4 cut(s) 69, 346, 491, 502
BstMBI GATC 3 cut(s) 28, 113, 311
BstMWI GCNNNNNNNGC 3 cut(s) 144, 233, 398
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 2 cut(s) 160, 616
BstSLI GKGCMC 1 cut(s) 508
BstUI CGCG 4 cut(s) 41, 48, 73, 588
BstV1I GCAGC 2 cut(s) 223, 328
BstX2I RGATCY 3 cut(s) 28, 113, 311
BstYI RGATCY 3 cut(s) 28, 113, 311
BsuRI GGCC 2 cut(s) 220, 421
BtrI CACGTC 1 cut(s) 572
BtsCI GGATG 1 cut(s) 462
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 2 cut(s) 540, 544
CfoI GCGC 3 cut(s) 43, 75, 612
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 288
CviAII CATG 2 cut(s) 501, 539
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 1 cut(s) 254
DpnI GATC 3 cut(s) 30, 115, 313
DpnII GATC 3 cut(s) 28, 113, 311
DriI GACNNNNNGTC 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 124, 454
Eam1105I GACNNNNNGTC 1 cut(s) 61
EarI CTCTTC 2 cut(s) 124, 454
EciI GGCGGA 2 cut(s) 38, 57
Eco147I AGGCCT 1 cut(s) 220
Eco31I GGTCTC 2 cut(s) 346, 491
Eco57I CTGAAG 2 cut(s) 372, 532
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 95
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 2 cut(s) 504, 542
FaiI YATR 5 cut(s) 410, 412, 502, 540, 618
FaqI GGGAC 1 cut(s) 92
FatI CATG 2 cut(s) 500, 538
FauNDI CATATG 1 cut(s) 410
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 4 cut(s) 71, 136, 237, 342
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 4 cut(s) 71, 136, 237, 342
GlaI GCGC 3 cut(s) 42, 74, 611
GluI GCNGC 4 cut(s) 71, 136, 237, 342
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 2 cut(s) 220, 421
HgaI GACGC 1 cut(s) 47
HhaI GCGC 3 cut(s) 43, 75, 612
Hin1I GRCGYC 1 cut(s) 382
Hin1II CATG 2 cut(s) 504, 542
Hin6I GCGC 3 cut(s) 41, 73, 610
HinP1I GCGC 3 cut(s) 41, 73, 610
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 544
HinfI GANTC 1 cut(s) 193
Hpy166II GTNNAC 4 cut(s) 37, 55, 102, 380
Hpy188I TCNGA 5 cut(s) 85, 246, 270, 518, 576
Hpy188III TCNNGA 2 cut(s) 439, 550
Hpy8I GTNNAC 4 cut(s) 37, 55, 102, 380
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 396, 523
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 3 cut(s) 15, 382, 571
HpyCH4V TGCA 6 cut(s) 147, 227, 284, 344, 538, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 233, 398
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 3 cut(s) 15, 382, 571
Hsp92I GRCGYC 1 cut(s) 382
Hsp92II CATG 2 cut(s) 504, 542
HspAI GCGC 3 cut(s) 41, 73, 610
Kzo9I GATC 3 cut(s) 28, 113, 311
LmnI GCTCC 1 cut(s) 48
Lsp1109I GCAGC 2 cut(s) 223, 328
MaeII ACGT 3 cut(s) 15, 382, 571
MaeIII GTNAC 3 cut(s) 16, 187, 304
MalI GATC 3 cut(s) 30, 115, 313
MboI GATC 3 cut(s) 28, 113, 311
MboII GAAGA 3 cut(s) 82, 111, 441
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 3 cut(s) 28, 113, 311
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 6 cut(s) 86, 228, 323, 372, 492, 593
MroXI GAANNNNTTC 1 cut(s) 581
MseI TTAA 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 97
MunI CAATTG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 4 cut(s) 41, 48, 73, 588
MwoI GCNNNNNNNGC 3 cut(s) 144, 233, 398
NdeI CATATG 1 cut(s) 410
NdeII GATC 3 cut(s) 28, 113, 311
NlaIII CATG 2 cut(s) 504, 542
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 542
PaeI GCATGC 1 cut(s) 542
PceI AGGCCT 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 581
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 4 cut(s) 72, 137, 238, 343
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PsuI RGATCY 3 cut(s) 28, 113, 311
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SalI GTCGAC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 491
SatI GCNGC 4 cut(s) 71, 136, 237, 342
Sau3AI GATC 3 cut(s) 28, 113, 311
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 508
SfcI CTRYAG 2 cut(s) 160, 616
SphI GCATGC 1 cut(s) 542
Sse9I AATT 6 cut(s) 86, 228, 323, 372, 492, 593
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 6 cut(s) 23, 46, 68, 71, 136, 586
SspI AATATT 1 cut(s) 405
StuI AGGCCT 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 3 cut(s) 18, 385, 574
TaqI TCGA 1 cut(s) 36
TasI AATT 6 cut(s) 86, 228, 323, 372, 492, 593
TauI GCSGC 2 cut(s) 73, 138
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 491
Tru9I TTAA 1 cut(s) 491
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 236, 341
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 397, 451
XapI RAATTY 2 cut(s) 86, 593
XceI RCATGY 1 cut(s) 542
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 581
ZraI GACGTC 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.