RchiOBHm_Chr3g0468871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017328
Physical Location & Seq
Forward (+)
14748051 .. 14749043
993 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 951 bp
ATGGTCTCTGTCTTCAAAACCAAAGAAGCCATGGTTGAAAGGTGCCTTATAGCAGCTTCTTTGGCAGCTTTGGTTTGCCACCCAAGTTCCACCATAAAATGCTTCAAACCCAAGCCAAGATCCCCAGAAGAAGACAACCTCAAAGACTCAAAACGACACTACTCGTCTCCACCAAAAGACCAAAAACGACTTTTCAAGGAAGAAGAAGTAGTAGTACTGCCTTCAAAACCCCAGAAAAACCTCCATACCTATCATGCAAGTAGTTCTTCTTCAGAACGTAAGAAGAAGAAGAAACCCATCAAGGCGTTTTCGGAGCTTGTTGAGAAAGACCGCCCATCAGTTGGGATTGTTGAGAGTATTGTGAGATCAGGATGGGTTAGTAGTGACGTAGGCCTCAAGATTGAGAAGGTGTTGAGGGTGAATCATAGTAAAAATGTGCTTCGAAGTTTCGAAGAGTACAGAGAAGACGTGAAAGCTACCCACAAAAAGGGTAGGATTTTAAAGAAGATAGAGCGATTGGTGGTTGATGGGAATGAGCTTCTGCAATTCCATGGTGCCACAGTTGCTTGCTCTCTAGGCATCAATGGGGACACTAGAATTTGTAAAATGAAATGCTGCCAAGTCTGCAGAATGATAACTTCAGGGTTTTCAGGCAATGATGGGACAATGTCGTTTTTCGGGACCAGCTGGAGGGCGCATCAGAAGGTGAACAGGGAGTGCTTGAAGAAAAGGGTGTGTGCAAGGAAGGCTATGGTGATATGTAGAGTGATTTCAGGTCGAATTGCTCATTTTCATGCACATGGACTCATGGATAATGATGGTGGTGAGTTTGATTCTGTGATGGCATGGACTGGGGATCAGTTTAGCGATTCAAGAGAGCTCTTGATTTTGAATTCGGAGGCTGTTCTTCCTTGCTTTGTGATCATATACAAGGTCGAAAAGCCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

35.58

Weight (kDa)

9.52

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017328)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15390
malus_domestica MD04G1104100.v1.1
prunus_persica Prupe.6G241000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0468871
rosa_laevigata RLG00000024405
rosa_multiflora Rmu_sc0001639.1_g000016
rosa_roxburghii Rroxscaffold_2G00108650 Rroxscaffold_2G00108670 Rroxscaffold_6G00412500
rosa_samantha Rh3AG146900 Rh3BG169400 Rh3DG205800
rosa_wichuraiana Rw3G013810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 42, 554
AccB7I CCANNNNNTGG 1 cut(s) 341
AciI CCGC 1 cut(s) 331
AclWI GGATC 2 cut(s) 114, 864
AcsI RAATTY 2 cut(s) 597, 892
AcuI CTGAAG 2 cut(s) 255, 624
AfaI GTAC 2 cut(s) 216, 458
AfiI CCNNNNNNNGG 3 cut(s) 341, 487, 690
AgsI TTSAA 8 cut(s) 16, 38, 106, 196, 225, 724, 873, 892
AjiI CACGTC 1 cut(s) 469
AluBI AGCT 7 cut(s) 56, 68, 316, 476, 538, 687, 880
AluI AGCT 7 cut(s) 56, 68, 316, 476, 538, 687, 880
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 2 cut(s) 10, 171
AlwI GGATC 2 cut(s) 114, 864
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 3 cut(s) 53, 65, 615
ApoI RAATTY 2 cut(s) 597, 892
AspLEI GCGC 1 cut(s) 697
AspS9I GGNCC 1 cut(s) 681
AsuHPI GGTGA 4 cut(s) 430, 718, 766, 836
AsuII TTCGAA 2 cut(s) 442, 450
AvaII GGWCC 1 cut(s) 681
BanI GGYRCC 2 cut(s) 42, 554
BanII GRGCYC 1 cut(s) 882
BarI GAAGNNNNNNTAC 4 cut(s) 198, 230, 253, 285
BbsI GAAGAC 3 cut(s) 4, 138, 471
Bbv12I GWGCWC 1 cut(s) 882
BbvI GCAGC 3 cut(s) 65, 77, 602
BccI CCATC 7 cut(s) 305, 343, 366, 521, 653, 812, 835
BclI TGATCA 1 cut(s) 921
BcoDI GTCTC 2 cut(s) 10, 171
BfaI CTAG 2 cut(s) 575, 594
BfmI CTRYAG 1 cut(s) 625
BisI GCNGC 3 cut(s) 54, 66, 616
BlsI GCNGC 3 cut(s) 55, 67, 617
BmcAI AGTACT 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 681
BmgBI CACGTC 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 681
BmiI GGNNCC 3 cut(s) 44, 556, 682
BmrI ACTGGG 1 cut(s) 861
BmsI GCATC 2 cut(s) 588, 706
BmuI ACTGGG 1 cut(s) 861
BpiI GAAGAC 3 cut(s) 4, 138, 471
BpmI CTGGAG 1 cut(s) 709
Bpu14I TTCGAA 2 cut(s) 442, 450
BpuEI CTTGAG 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 30, 550
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 487, 690
Bse1I ACTGG 1 cut(s) 856
Bse3DI GCAATG 1 cut(s) 661
BseDI CCNNGG 2 cut(s) 30, 550
BseGI GGATG 1 cut(s) 377
BseLI CCNNNNNNNGG 3 cut(s) 341, 487, 690
BseMI GCAATG 1 cut(s) 661
BseNI ACTGG 1 cut(s) 856
BseXI GCAGC 3 cut(s) 65, 77, 602
BshFI GGCC 1 cut(s) 393
BshNI GGYRCC 2 cut(s) 42, 554
BsiHKAI GWGCWC 1 cut(s) 882
BslFI GGGAC 3 cut(s) 602, 676, 694
BslI CCNNNNNNNGG 3 cut(s) 341, 487, 690
BsmAI GTCTC 2 cut(s) 10, 171
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 3 cut(s) 602, 676, 694
BsnI GGCC 1 cut(s) 393
Bso31I GGTCTC 1 cut(s) 10
Bsp119I TTCGAA 2 cut(s) 442, 450
Bsp1286I GDGCHC 1 cut(s) 882
Bsp143I GATC 4 cut(s) 119, 365, 856, 921
Bsp19I CCATGG 2 cut(s) 30, 550
BspACI CCGC 1 cut(s) 331
BspANI GGCC 1 cut(s) 393
BspHI TCATGA 1 cut(s) 947
BspLI GGNNCC 3 cut(s) 44, 556, 682
BspMAI CTGCAG 1 cut(s) 629
BspPI GGATC 2 cut(s) 114, 864
BspT104I TTCGAA 2 cut(s) 442, 450
BspT107I GGYRCC 2 cut(s) 42, 554
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 661
BsrI ACTGG 1 cut(s) 856
BssECI CCNNGG 2 cut(s) 30, 550
BssMI GATC 4 cut(s) 119, 365, 856, 921
BssT1I CCWWGG 2 cut(s) 30, 550
Bst4CI ACNGT 1 cut(s) 562
Bst6I CTCTTC 1 cut(s) 447
BstBI TTCGAA 2 cut(s) 442, 450
BstC8I GCNNGC 1 cut(s) 568
BstDSI CCRYGG 2 cut(s) 30, 550
BstF5I GGATG 1 cut(s) 377
BstHHI GCGC 1 cut(s) 697
BstKTI GATC 4 cut(s) 122, 368, 859, 924
BstMAI GTCTC 2 cut(s) 10, 171
BstMBI GATC 4 cut(s) 119, 365, 856, 921
BstMWI GCNNNNNNNGC 5 cut(s) 62, 563, 576, 624, 746
BstSFI CTRYAG 1 cut(s) 625
BstV1I GCAGC 3 cut(s) 65, 77, 602
BstV2I GAAGAC 3 cut(s) 4, 138, 471
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BsuRI GGCC 1 cut(s) 393
BtgI CCRYGG 2 cut(s) 30, 550
BtrI CACGTC 1 cut(s) 469
BtsCI GGATG 1 cut(s) 377
Cac8I GCNNGC 1 cut(s) 568
CciI TCATGA 1 cut(s) 947
CfoI GCGC 1 cut(s) 697
Cfr13I GGNCC 1 cut(s) 681
Csp6I GTAC 2 cut(s) 215, 457
CviAII CATG 8 cut(s) 31, 254, 551, 794, 800, 808, 846, 948
CviQI GTAC 2 cut(s) 215, 457
DpnI GATC 4 cut(s) 121, 367, 858, 923
DpnII GATC 4 cut(s) 119, 365, 856, 921
DraI TTTAAA 1 cut(s) 501
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
Ecl136II GAGCTC 1 cut(s) 880
Eco130I CCWWGG 2 cut(s) 30, 550
Eco147I AGGCCT 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 882
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 681
Eco53kI GAGCTC 1 cut(s) 880
Eco57I CTGAAG 2 cut(s) 255, 624
EcoICRI GAGCTC 1 cut(s) 880
EcoRI GAATTC 1 cut(s) 892
EcoT14I CCWWGG 2 cut(s) 30, 550
EcoT38I GRGCYC 1 cut(s) 882
ErhI CCWWGG 2 cut(s) 30, 550
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 8 cut(s) 34, 257, 554, 797, 803, 811, 849, 951
FalI AAGNNNNNCTT 2 cut(s) 250, 282
FaqI GGGAC 3 cut(s) 602, 676, 694
FatI CATG 8 cut(s) 30, 253, 550, 793, 799, 807, 845, 947
FbaI TGATCA 1 cut(s) 921
Fnu4HI GCNGC 3 cut(s) 54, 66, 616
FokI GGATG 1 cut(s) 384
FriOI GRGCYC 1 cut(s) 882
Fsp4HI GCNGC 3 cut(s) 54, 66, 616
FspBI CTAG 2 cut(s) 575, 594
GlaI GCGC 1 cut(s) 696
GluI GCNGC 3 cut(s) 54, 66, 616
GsuI CTGGAG 1 cut(s) 709
HaeIII GGCC 1 cut(s) 393
HhaI GCGC 1 cut(s) 697
Hin1II CATG 8 cut(s) 34, 257, 554, 797, 803, 811, 849, 951
Hin6I GCGC 1 cut(s) 695
HinP1I GCGC 1 cut(s) 695
HinfI GANTC 5 cut(s) 146, 421, 804, 833, 869
HphI GGTGA 4 cut(s) 430, 718, 766, 836
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 4 cut(s) 274, 313, 702, 898
Hpy188III TCNNGA 6 cut(s) 369, 397, 679, 873, 883, 948
Hpy8I GTNNAC 1 cut(s) 709
HpyAV CCTTC 4 cut(s) 231, 400, 697, 739
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4IV ACGT 3 cut(s) 277, 387, 468
HpyCH4V TGCA 5 cut(s) 257, 544, 627, 740, 797
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 563, 576, 624, 746
HpySE526I ACGT 3 cut(s) 277, 387, 468
Hsp92II CATG 8 cut(s) 34, 257, 554, 797, 803, 811, 849, 951
HspAI GCGC 1 cut(s) 695
Ksp22I TGATCA 1 cut(s) 921
Kzo9I GATC 4 cut(s) 119, 365, 856, 921
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 3 cut(s) 65, 77, 602
LweI GCATC 2 cut(s) 588, 706
MaeI CTAG 2 cut(s) 575, 594
MaeII ACGT 3 cut(s) 277, 387, 468
MaeIII GTNAC 1 cut(s) 383
MalI GATC 4 cut(s) 121, 367, 858, 923
MboI GATC 4 cut(s) 119, 365, 856, 921
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 882
MluCI AATT 4 cut(s) 545, 597, 780, 892
MlyI GAGTC 2 cut(s) 140, 798
MnlI CCTC 6 cut(s) 149, 251, 404, 408, 684, 892
MseI TTAA 1 cut(s) 500
MslI CAYNNNNRTG 2 cut(s) 792, 798
MspA1I CMGCKG 1 cut(s) 687
MwoI GCNNNNNNNGC 5 cut(s) 62, 563, 576, 624, 746
NcoI CCATGG 2 cut(s) 30, 550
NdeII GATC 4 cut(s) 119, 365, 856, 921
NlaIII CATG 8 cut(s) 34, 257, 554, 797, 803, 811, 849, 951
NlaIV GGNNCC 3 cut(s) 44, 556, 682
NmuCI GTSAC 1 cut(s) 383
NspV TTCGAA 2 cut(s) 442, 450
PagI TCATGA 1 cut(s) 947
PceI AGGCCT 1 cut(s) 393
PfeI GAWTC 3 cut(s) 421, 833, 869
PflFI GACNNNGTC 1 cut(s) 667
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 3 cut(s) 55, 67, 617
PleI GAGTC 2 cut(s) 140, 798
PpsI GAGTC 2 cut(s) 140, 798
Psp124BI GAGCTC 1 cut(s) 882
PspN4I GGNNCC 3 cut(s) 44, 556, 682
PspPI GGNCC 1 cut(s) 681
PstI CTGCAG 1 cut(s) 629
PsuI RGATCY 1 cut(s) 119
PsyI GACNNNGTC 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 687
RsaI GTAC 2 cut(s) 216, 458
RsaNI GTAC 2 cut(s) 215, 457
RseI CAYNNNNRTG 2 cut(s) 792, 798
SacI GAGCTC 1 cut(s) 882
SaqAI TTAA 1 cut(s) 500
SatI GCNGC 3 cut(s) 54, 66, 616
Sau3AI GATC 4 cut(s) 119, 365, 856, 921
Sau96I GGNCC 1 cut(s) 681
ScaI AGTACT 1 cut(s) 216
SchI GAGTC 2 cut(s) 140, 798
SduI GDGCHC 1 cut(s) 882
SfaNI GCATC 2 cut(s) 588, 706
SfcI CTRYAG 1 cut(s) 625
SfuI TTCGAA 2 cut(s) 442, 450
SinI GGWCC 1 cut(s) 681
SmiMI CAYNNNNRTG 2 cut(s) 792, 798
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 4 cut(s) 545, 597, 780, 892
SseBI AGGCCT 1 cut(s) 393
SsiI CCGC 1 cut(s) 331
SspMI CTAG 2 cut(s) 575, 594
SstI GAGCTC 1 cut(s) 882
StuI AGGCCT 1 cut(s) 393
StyI CCWWGG 2 cut(s) 30, 550
TaaI ACNGT 1 cut(s) 562
TaiI ACGT 3 cut(s) 280, 390, 471
TaqI TCGA 4 cut(s) 442, 450, 778, 936
TasI AATT 4 cut(s) 545, 597, 780, 892
TatI WGTACW 2 cut(s) 214, 456
TfiI GAWTC 3 cut(s) 421, 833, 869
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 3 cut(s) 53, 65, 615
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 3 cut(s) 623, 782, 936
Tth111I GACNNNGTC 1 cut(s) 667
Van91I CCANNNNNTGG 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 681
XapI RAATTY 2 cut(s) 597, 892
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XspI CTAG 2 cut(s) 575, 594
ZrmI AGTACT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.