Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015746

Physical Location & Seq

Genomic Coordinates Forward (+)

21221503 .. 21222546

Gene Structure 1044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCTACTGTAGTCTCTGACCAAGATGCAGGGGTTATCAGATCGTTTTCAGAATCAACACCATTTAGTTACATTTTAAAGGTAGAGTCCTTTTCATTGCTGGCGGATGATTCAATTGCGGAGACAAATGTTAAATGTGAATCGGGGGTCTTCGGAGCCGGAGGATACAATTGGAAACTCGTGTTCTACCCAAACGGAAACAAGAAGAAGAATGTAGAAGACCACATCTCTCTCTACTTGGTAACCGCGGGAGAGAACTCACTCCAGCCTGGTGAGGAAGTATATGTTGATTTCAGGTTATTTTTGCTTGATCAGATAAAGAGCAAGTACTTGGTTGTTGAAGATGCCAATACAAGAAACTTTTGCTTTCGAGGGGAGATGTCTGGTGCAGTCGGTTTTGATAAACTTGTCTCTCTAAGGGATTTTACTGATGCCTCCAATGGTTATCTAATTGATGATAAATGTGTGTTTGGAGCTGAGGTCTTTGTTTGTAATGGAAGAAGACCCGTACCCCAAGCAGATTGTCTATCAATAAGGAAGACTACCTCAGAGAAGTACAAGCATACTTGGAAGGTTGGGAACTTTTCAAACTTAGCCGCTCAATGCTATGAAGAACGATTCACTGCTGGAGGCCAGAAATGGAAGATAGTTCTCTATCCCCAGGGAATCGGTGATGGAAGGGGTACTTATCTCTCTCTTTATTTGTCATTAGCTAATCCAGAAGATCTTGGTGATGGCCCCAAAGTATCAACCAATTTCTGCCTGCGCATTGTAGATCAAGTACATGCACTGCACTGTACTATGAATGGTACTAATCGTATTTTCACTGGCCCTACTTGGTCTCTCGGTTGGGATGATTTCATTGCACTGGACGATTTCAGACGGGAAGACAGAGGGCTTTTGAGGGAGGATACTTGCTTTGTGGAGGCAGAGATCACGGTCAGCAGAACTGCTATGGTACTAGGTACCTTAGGCCAAAATGACACTAATTCGGAAAGATGTAAATGTCGAAAGATTTGCTCAGGGATCAAGCAGTTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

347

Amino Acids

38.74

Weight (kDa)

5.43

Isoelectric Point (pI)

22.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	23 - 161	9.4e-33	MATH domain
MATH	PF00917	42 - 163	5.1e-08	MATH domain
MATH_2	PF22486	187 - 312	1.6e-27	MATH domain
MATH	PF00917	193 - 314	1.7e-09	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015746)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0475431 RchiOBHm_Chr4g0426891 RchiOBHm_Chr4g0426901
rosa_laevigata	RLG00000007270
rosa_multiflora	Rmu_co8427477.1_g000001 Rmu_sc0016637.1_g000008
rosa_rugosa	Rorug03G0148800.1 Rorug04G0215300
rosa_samantha	Rh3AG199100 Rh3BG228900 Rh3CG223300 Rh3DG224200 Rh4AG270700 Rh4BG277000
rosa_wichuraiana	Rw4G023490 Rw4G023500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	767
Acc65I	GGTACC	1 cut(s)	965
AccB1I	GGYRCC	1 cut(s)	965
AccBSI	CCGCTC	1 cut(s)	599
AccII	CGCG	1 cut(s)	248
AciI	CCGC	5 cut(s)	104, 119, 246, 248, 597
AclWI	GGATC	1 cut(s)	1034
AfaI	GTAC	9 cut(s)	329, 510, 557, 685, 783, 799, 811, 960, 967
AgsI	TTSAA	3 cut(s)	114, 341, 588
AjnI	CCWGG	2 cut(s)	268, 660
AluBI	AGCT	2 cut(s)	476, 713
AluI	AGCT	2 cut(s)	476, 713
Alw26I	GTCTC	4 cut(s)	19, 116, 415, 846
AlwI	GGATC	1 cut(s)	1034
AoxI	GGCC	4 cut(s)	631, 736, 829, 973
Asp718I	GGTACC	1 cut(s)	965
AspLEI	GCGC	1 cut(s)	768
AspS9I	GGNCC	2 cut(s)	737, 830
AsuHPI	GGTGA	3 cut(s)	284, 683, 743
AxyI	CCTNAGG	1 cut(s)	970
BanI	GGYRCC	1 cut(s)	965
BauI	CACGAG	1 cut(s)	179
BbsI	GAAGAC	5 cut(s)	142, 225, 508, 545, 894
BbvCI	CCTCAGC	1 cut(s)	477
BccI	CCATC	2 cut(s)	668, 728
BcgI	CGANNNNNNTGC	2 cut(s)	999, 1033
BciT130I	CCWGG	2 cut(s)	270, 662
BciVI	GTATCC	2 cut(s)	158, 904
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	4 cut(s)	19, 116, 415, 846
BfaI	CTAG	1 cut(s)	962
BfmI	CTRYAG	1 cut(s)	9
BfuI	GTATCC	2 cut(s)	158, 904
BglII	AGATCT	1 cut(s)	724
BisI	GCNGC	1 cut(s)	597
BlsI	GCNGC	1 cut(s)	598
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	2 cut(s)	270, 662
BmgT120I	GGNCC	2 cut(s)	737, 830
BmiI	GGNNCC	3 cut(s)	157, 739, 967
BmrFI	CCNGG	2 cut(s)	270, 662
BmsI	GCATC	3 cut(s)	16, 334, 421
BpiI	GAAGAC	5 cut(s)	142, 225, 508, 545, 894
BpmI	CTGGAG	2 cut(s)	248, 648
Bpu10I	CCTNAGC	2 cut(s)	477, 1021
BsaI	GGTCTC	1 cut(s)	846
BsaJI	CCNNGG	3 cut(s)	246, 660, 661
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bse1I	ACTGG	2 cut(s)	832, 873
Bse21I	CCTNAGG	1 cut(s)	970
Bse3DI	GCAATG	2 cut(s)	95, 861
BseBI	CCWGG	2 cut(s)	270, 662
BseDI	CCNNGG	3 cut(s)	246, 660, 661
BseGI	GGATG	2 cut(s)	112, 859
BseMI	GCAATG	2 cut(s)	95, 861
BseMII	CTCAG	3 cut(s)	468, 561, 1035
BseNI	ACTGG	2 cut(s)	832, 873
BsgI	GTGCAG	2 cut(s)	408, 776
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	4 cut(s)	633, 738, 831, 975
BshNI	GGYRCC	1 cut(s)	965
BsiSI	CCGG	1 cut(s)	159
BsmAI	GTCTC	4 cut(s)	19, 116, 415, 846
BsnI	GGCC	4 cut(s)	633, 738, 831, 975
Bso31I	GGTCTC	1 cut(s)	846
Bsp143I	GATC	6 cut(s)	41, 310, 724, 775, 933, 1026
BspACI	CCGC	5 cut(s)	104, 119, 246, 248, 597
BspANI	GGCC	4 cut(s)	633, 738, 831, 975
BspCNI	CTCAG	3 cut(s)	469, 560, 1034
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	3 cut(s)	157, 739, 967
BspPI	GGATC	1 cut(s)	1034
BspT107I	GGYRCC	1 cut(s)	965
BspTNI	GGTCTC	1 cut(s)	846
BsrBI	CCGCTC	1 cut(s)	599
BsrDI	GCAATG	2 cut(s)	95, 861
BsrI	ACTGG	2 cut(s)	832, 873
BssECI	CCNNGG	3 cut(s)	246, 660, 661
BssMI	GATC	6 cut(s)	41, 310, 724, 775, 933, 1026
BssSI	CACGAG	1 cut(s)	179
Bst2BI	CACGAG	1 cut(s)	179
Bst2UI	CCWGG	2 cut(s)	270, 662
Bst4CI	ACNGT	3 cut(s)	10, 797, 940
BstC8I	GCNNGC	2 cut(s)	102, 764
BstDEI	CTNAG	6 cut(s)	416, 477, 547, 592, 970, 1021
BstDSI	CCRYGG	1 cut(s)	246
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	112, 859
BstFNI	CGCG	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	768
BstKTI	GATC	6 cut(s)	44, 313, 727, 778, 936, 1029
BstMAI	GTCTC	4 cut(s)	19, 116, 415, 846
BstMBI	GATC	6 cut(s)	41, 310, 724, 775, 933, 1026
BstNI	CCWGG	2 cut(s)	270, 662
BstNSI	RCATGY	1 cut(s)	788
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	2 cut(s)	268, 660
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	248
BstV2I	GAAGAC	5 cut(s)	142, 225, 508, 545, 894
BstX2I	RGATCY	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	724
Bsu36I	CCTNAGG	1 cut(s)	970
BsuI	GTATCC	2 cut(s)	158, 904
BsuRI	GGCC	4 cut(s)	633, 738, 831, 975
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	112, 859
BtsI	GCAGTG	2 cut(s)	621, 788
BtsIMutI	CAGTG	5 cut(s)	621, 788, 793, 825, 866
Cac8I	GCNNGC	2 cut(s)	102, 764
CfoI	GCGC	1 cut(s)	768
Cfr13I	GGNCC	2 cut(s)	737, 830
Cfr42I	CCGCGG	1 cut(s)	249
Csp6I	GTAC	9 cut(s)	328, 509, 556, 684, 782, 798, 810, 959, 966
CviAII	CATG	1 cut(s)	785
CviQI	GTAC	9 cut(s)	328, 509, 556, 684, 782, 798, 810, 959, 966
DdeI	CTNAG	6 cut(s)	416, 477, 547, 592, 970, 1021
DpnI	GATC	6 cut(s)	43, 312, 726, 777, 935, 1028
DpnII	GATC	6 cut(s)	41, 310, 724, 775, 933, 1026
DraI	TTTAAA	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	846
Eco81I	CCTNAGG	1 cut(s)	970
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRII	CCWGG	2 cut(s)	268, 660
FaeI	CATG	1 cut(s)	788
FaiI	YATR	7 cut(s)	283, 285, 564, 609, 786, 803, 956
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FatI	CATG	1 cut(s)	784
FauI	CCCGC	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	597
FokI	GGATG	2 cut(s)	119, 866
Fsp4HI	GCNGC	1 cut(s)	597
FspBI	CTAG	1 cut(s)	962
FspI	TGCGCA	1 cut(s)	767
GlaI	GCGC	1 cut(s)	767
GluI	GCNGC	1 cut(s)	597
GsuI	CTGGAG	2 cut(s)	248, 648
HaeIII	GGCC	4 cut(s)	633, 738, 831, 975
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	1 cut(s)	768
Hin1II	CATG	1 cut(s)	788
Hin6I	GCGC	1 cut(s)	766
HinP1I	GCGC	1 cut(s)	766
HinfI	GANTC	6 cut(s)	53, 86, 110, 140, 618, 666
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	3 cut(s)	284, 683, 743
Hpy188I	TCNGA	8 cut(s)	19, 41, 52, 155, 315, 550, 881, 994
Hpy188III	TCNNGA	1 cut(s)	719
HpyAV	CCTTC	2 cut(s)	565, 672
HpyCH4III	ACNGT	3 cut(s)	10, 797, 940
HpyCH4V	TGCA	5 cut(s)	29, 389, 788, 793, 866
HpyF3I	CTNAG	6 cut(s)	416, 477, 547, 592, 970, 1021
Hsp92II	CATG	1 cut(s)	788
HspAI	GCGC	1 cut(s)	766
KpnI	GGTACC	1 cut(s)	969
Ksp22I	TGATCA	1 cut(s)	310
KspI	CCGCGG	1 cut(s)	249
Kzo9I	GATC	6 cut(s)	41, 310, 724, 775, 933, 1026
LmnI	GCTCC	2 cut(s)	155, 473
LweI	GCATC	3 cut(s)	16, 334, 421
MaeI	CTAG	1 cut(s)	962
MaeIII	GTNAC	2 cut(s)	68, 241
MalI	GATC	6 cut(s)	43, 312, 726, 777, 935, 1028
MbiI	CCGCTC	1 cut(s)	599
MboI	GATC	6 cut(s)	41, 310, 724, 775, 933, 1026
MfeI	CAATTG	2 cut(s)	114, 169
MflI	RGATCY	1 cut(s)	724
MluCI	AATT	5 cut(s)	114, 169, 450, 754, 988
MlyI	GAGTC	1 cut(s)	95
MseI	TTAA	2 cut(s)	77, 132
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	270, 662
MunI	CAATTG	2 cut(s)	114, 169
MvaI	CCWGG	2 cut(s)	270, 662
MvnI	CGCG	1 cut(s)	248
NdeII	GATC	6 cut(s)	41, 310, 724, 775, 933, 1026
NlaIII	CATG	1 cut(s)	788
NlaIV	GGNNCC	3 cut(s)	157, 739, 967
NsbI	TGCGCA	1 cut(s)	767
NspI	RCATGY	1 cut(s)	788
PasI	CCCWGGG	1 cut(s)	661
PfeI	GAWTC	5 cut(s)	53, 110, 140, 618, 666
PkrI	GCNGC	1 cut(s)	598
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	268, 660
PspEI	GGTNACC	1 cut(s)	241
PspGI	CCWGG	2 cut(s)	268, 660
PspN4I	GGNNCC	3 cut(s)	157, 739, 967
PspPI	GGNCC	2 cut(s)	737, 830
PsuI	RGATCY	1 cut(s)	724
RsaI	GTAC	9 cut(s)	329, 510, 557, 685, 783, 799, 811, 960, 967
RsaNI	GTAC	9 cut(s)	328, 509, 556, 684, 782, 798, 810, 959, 966
SacII	CCGCGG	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	77, 132
SatI	GCNGC	1 cut(s)	597
Sau3AI	GATC	6 cut(s)	41, 310, 724, 775, 933, 1026
Sau96I	GGNCC	2 cut(s)	737, 830
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	270, 662
SetI	ASST	9 cut(s)	84, 299, 478, 483, 548, 576, 715, 967, 971
SfaNI	GCATC	3 cut(s)	16, 334, 421
SfcI	CTRYAG	1 cut(s)	9
Sfr303I	CCGCGG	1 cut(s)	249
SgrBI	CCGCGG	1 cut(s)	249
Sse9I	AATT	5 cut(s)	114, 169, 450, 754, 988
SsiI	CCGC	5 cut(s)	104, 119, 246, 248, 597
SspMI	CTAG	1 cut(s)	962
StyD4I	CCNGG	2 cut(s)	268, 660
TaaI	ACNGT	3 cut(s)	10, 797, 940
TaqI	TCGA	2 cut(s)	370, 1009
TasI	AATT	5 cut(s)	114, 169, 450, 754, 988
TatI	WGTACW	4 cut(s)	327, 555, 781, 797
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	5 cut(s)	53, 110, 140, 618, 666
Tru1I	TTAA	2 cut(s)	77, 132
Tru9I	TTAA	2 cut(s)	77, 132
TscAI	CASTG	5 cut(s)	628, 795, 800, 832, 873
TspDTI	ATGAA	4 cut(s)	84, 624, 818, 850
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	5 cut(s)	628, 795, 800, 832, 873
XceI	RCATGY	1 cut(s)	788
XspI	CTAG	1 cut(s)	962
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.