Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0015746

Physical Location & Seq

Genomic Coordinates Forward (+)

45055700 .. 45058841

Gene Structure 3142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG277000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCAGATGCAGGAGTTTTCAGAATCAACACCATTTAGTTACATTCTAAAGGTCGAGTCCTTTTCATTGCTGGCGGATGATTCAATTGCGGAGACAAATGTTAAATGTGAATCAGGGGTCTTCGGAGCCGGAGGATACAATTGGAAACTTGTGTTCTACCCAAATGGAAACAAGAAGAAGAATGTAAAAGACCACATCTCTCTCTACTTGGTAATGGCGGGGGAGAACTCACTCCAGCCTGGTGAGGAAGTATATGTTGATTTCAGGTTATTTTTGCTTGATCAGATAAAGAGCAAGTACTTGGTTGTTGAAGATGCTTTTACAAGGAACTTTTGCTTTCGAAGGGAGATGTCTGGTGCGGTCGGTTTTGATAAACTTGTCTCTCTAAGGGACTTTACTGATGCCTCCAGTGGTTATCTAATTGATGATAAATGTGTGTTTGGAGCTGAGGTCTTTGTTTGTAATGGAAGAAGACCCGTACCCCAGGCAGATTGTCTATCAATAAGGAAGACAACTTCACAGAAGTACAAGCATACTTGGAAGGTTAGGAACTTTTCAAGCTTAGCCGCTCCATGCTATGAAGAACAATTTACGGCTGGAGGCCAGAAATGGAAAATAACTCTCTATCCCGCGGGGAATGGTGGTGGAGCGGGTACTCATCTCAGTCTTTTTCTGGCATTAGCTGATCCAGAAAATCTTCCTGATGGCACCAAAATATCTACCAATTATTGCCTGCGCGTTGTAGATCAAATACATGGGCATTGTATTAAAAAGAGTCTAAGTGGTCGTATTTTCAGTGGCACTGATAAGAGTTGGGGTTGGCATCGTTTCATTACACTGGACGATTTCAGACGGGAAGACAAAGGGTTTTTGAGGAGGGATACTTGCATAGTGGAGGCAGAGTTCACGATCAATGGAACTGCTATGGTACTACGTACCTCAGGCGAAAATGACACTAACAATGTCGAAAGATTTGCTGAGGGATCACGCACTTTGTGTAAAAAGAAAACTCTTGTGAACTACATTTTAACTTGGTTCAATCAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

349

Amino Acids

39.46

Weight (kDa)

8.23

Isoelectric Point (pI)

26.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	13 - 151	2.5e-33	MATH domain
MATH	PF00917	32 - 153	4.4e-08	MATH domain
MATH_2	PF22486	177 - 301	2.7e-30	MATH domain
MATH	PF00917	182 - 304	1.9e-13	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015746)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0475431 RchiOBHm_Chr4g0426891 RchiOBHm_Chr4g0426901
rosa_laevigata	RLG00000007270
rosa_multiflora	Rmu_co8427477.1_g000001 Rmu_sc0016637.1_g000008
rosa_rugosa	Rorug03G0148800.1 Rorug04G0215300
rosa_samantha	Rh3AG199100 Rh3BG228900 Rh3CG223300 Rh3DG224200 Rh4AG270700 Rh4BG277000
rosa_wichuraiana	Rw4G023490 Rw4G023500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	707
AccBSI	CCGCTC	2 cut(s)	569, 650
AccII	CGCG	2 cut(s)	632, 738
AciI	CCGC	8 cut(s)	74, 89, 218, 359, 567, 630, 632, 650
AclWI	GGATC	2 cut(s)	680, 991
AdeI	CACNNNGTG	1 cut(s)	996
AfaI	GTAC	6 cut(s)	299, 480, 527, 655, 930, 937
AgsI	TTSAA	4 cut(s)	84, 311, 558, 1039
AjnI	CCWGG	2 cut(s)	238, 483
AloI	GAACNNNNNNTCC	2 cut(s)	887, 919
AluBI	AGCT	3 cut(s)	446, 561, 683
AluI	AGCT	3 cut(s)	446, 561, 683
Alw26I	GTCTC	2 cut(s)	86, 385
AlwI	GGATC	2 cut(s)	680, 991
AoxI	GGCC	1 cut(s)	601
Asp700I	GAANNNNTTC	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	738
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	340
AxyI	CCTNAGG	1 cut(s)	940
BanI	GGYRCC	1 cut(s)	707
BbsI	GAAGAC	4 cut(s)	112, 478, 515, 864
BbvCI	CCTCAGC	2 cut(s)	447, 978
BccI	CCATC	1 cut(s)	698
BceAI	ACGGC	1 cut(s)	609
BcgI	CGANNNNNNTGC	2 cut(s)	956, 990
BciT130I	CCWGG	2 cut(s)	240, 485
BciVI	GTATCC	2 cut(s)	128, 874
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	86, 385
BfuI	GTATCC	2 cut(s)	128, 874
BisI	GCNGC	1 cut(s)	567
BlpI	GCTNAGC	1 cut(s)	562
BlsI	GCNGC	1 cut(s)	568
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	2 cut(s)	240, 485
BmiI	GGNNCC	2 cut(s)	127, 709
BmrFI	CCNGG	2 cut(s)	240, 485
BmsI	GCATC	3 cut(s)	304, 391, 832
BpiI	GAAGAC	4 cut(s)	112, 478, 515, 864
BpmI	CTGGAG	3 cut(s)	218, 391, 618
Bpu10I	CCTNAGC	2 cut(s)	447, 978
Bpu1102I	GCTNAGC	1 cut(s)	562
Bpu14I	TTCGAA	1 cut(s)	340
BsaAI	YACGTR	1 cut(s)	935
BsaJI	CCNNGG	2 cut(s)	483, 630
BsaXI	ACNNNNNCTCC	4 cut(s)	435, 465, 887, 917
Bse1I	ACTGG	2 cut(s)	408, 843
Bse21I	CCTNAGG	1 cut(s)	940
Bse3DI	GCAATG	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	240, 485
BseDI	CCNNGG	2 cut(s)	483, 630
BseGI	GGATG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	4 cut(s)	438, 676, 954, 969
BseNI	ACTGG	2 cut(s)	408, 843
BseRI	GAGGAG	1 cut(s)	889
Bsh1236I	CGCG	2 cut(s)	632, 738
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	603
BshNI	GGYRCC	1 cut(s)	707
BsiEI	CGRYCG	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	404
BsmAI	GTCTC	2 cut(s)	86, 385
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	603
Bsp119I	TTCGAA	1 cut(s)	340
Bsp143I	GATC	5 cut(s)	280, 685, 745, 909, 983
Bsp1720I	GCTNAGC	1 cut(s)	562
BspACI	CCGC	8 cut(s)	74, 89, 218, 359, 567, 630, 632, 650
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	4 cut(s)	439, 675, 953, 970
BspFNI	CGCG	2 cut(s)	632, 738
BspLI	GGNNCC	2 cut(s)	127, 709
BspPI	GGATC	2 cut(s)	680, 991
BspT104I	TTCGAA	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	707
BsrBI	CCGCTC	2 cut(s)	569, 650
BsrDI	GCAATG	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	408, 843
BssECI	CCNNGG	2 cut(s)	483, 630
BssMI	GATC	5 cut(s)	280, 685, 745, 909, 983
Bst2UI	CCWGG	2 cut(s)	240, 485
BstBAI	YACGTR	1 cut(s)	935
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	72, 734
BstDEI	CTNAG	7 cut(s)	386, 447, 562, 662, 779, 940, 978
BstDSI	CCRYGG	1 cut(s)	630
BstF5I	GGATG	1 cut(s)	82
BstFNI	CGCG	2 cut(s)	632, 738
BstHHI	GCGC	1 cut(s)	738
BstKTI	GATC	5 cut(s)	283, 688, 748, 912, 986
BstMAI	GTCTC	2 cut(s)	86, 385
BstMBI	GATC	5 cut(s)	280, 685, 745, 909, 983
BstMCI	CGRYCG	1 cut(s)	363
BstNI	CCWGG	2 cut(s)	240, 485
BstSCI	CCNGG	2 cut(s)	238, 483
BstSNI	TACGTA	1 cut(s)	935
BstUI	CGCG	2 cut(s)	632, 738
BstV2I	GAAGAC	4 cut(s)	112, 478, 515, 864
Bsu36I	CCTNAGG	1 cut(s)	940
BsuI	GTATCC	2 cut(s)	128, 874
BsuRI	GGCC	1 cut(s)	603
BtgI	CCRYGG	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	4 cut(s)	415, 801, 802, 836
Cac8I	GCNNGC	2 cut(s)	72, 734
CfoI	GCGC	1 cut(s)	738
Cfr42I	CCGCGG	1 cut(s)	633
Csp6I	GTAC	6 cut(s)	298, 479, 526, 654, 929, 936
CviAII	CATG	2 cut(s)	573, 755
CviJI	RGCY	8 cut(s)	128, 238, 446, 561, 566, 596, 603, 683
CviKI_1	RGCY	8 cut(s)	128, 238, 446, 561, 566, 596, 603, 683
CviQI	GTAC	6 cut(s)	298, 479, 526, 654, 929, 936
DdeI	CTNAG	7 cut(s)	386, 447, 562, 662, 779, 940, 978
DpnI	GATC	5 cut(s)	282, 687, 747, 911, 985
DpnII	GATC	5 cut(s)	280, 685, 745, 909, 983
DraIII	CACNNNGTG	1 cut(s)	996
EciI	GGCGGA	1 cut(s)	89
Eco105I	TACGTA	1 cut(s)	935
Eco81I	CCTNAGG	1 cut(s)	940
EcoRII	CCWGG	2 cut(s)	238, 483
FaeI	CATG	2 cut(s)	576, 758
FaiI	YATR	8 cut(s)	253, 255, 534, 574, 579, 756, 890, 926
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	2 cut(s)	572, 754
FauI	CCCGC	4 cut(s)	211, 625, 637, 643
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	567
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	567
GlaI	GCGC	1 cut(s)	737
GluI	GCNGC	1 cut(s)	567
GsuI	CTGGAG	3 cut(s)	218, 391, 618
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	1 cut(s)	738
Hin1II	CATG	2 cut(s)	576, 758
Hin6I	GCGC	1 cut(s)	736
HinP1I	GCGC	1 cut(s)	736
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	5 cut(s)	23, 56, 80, 110, 775
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	2 cut(s)	906, 1018
Hpy188I	TCNGA	5 cut(s)	22, 125, 285, 851, 1044
Hpy188III	TCNNGA	3 cut(s)	689, 701, 907
Hpy8I	GTNNAC	2 cut(s)	906, 1018
HpyAV	CCTTC	2 cut(s)	336, 535
HpyCH4IV	ACGT	1 cut(s)	934
HpyCH4V	TGCA	3 cut(s)	4, 10, 888
HpyF3I	CTNAG	7 cut(s)	386, 447, 562, 662, 779, 940, 978
HpySE526I	ACGT	1 cut(s)	934
Hsp92II	CATG	2 cut(s)	576, 758
HspAI	GCGC	1 cut(s)	736
Ksp22I	TGATCA	1 cut(s)	280
KspI	CCGCGG	1 cut(s)	633
Kzo9I	GATC	5 cut(s)	280, 685, 745, 909, 983
LmnI	GCTCC	4 cut(s)	125, 443, 574, 647
LweI	GCATC	3 cut(s)	304, 391, 832
MaeII	ACGT	1 cut(s)	934
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	5 cut(s)	282, 687, 747, 911, 985
MbiI	CCGCTC	2 cut(s)	569, 650
MboI	GATC	5 cut(s)	280, 685, 745, 909, 983
MfeI	CAATTG	2 cut(s)	84, 139
MluCI	AATT	5 cut(s)	84, 139, 420, 587, 724
MlyI	GAGTC	2 cut(s)	65, 784
MroXI	GAANNNNTTC	1 cut(s)	696
MseI	TTAA	3 cut(s)	102, 768, 1028
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	240, 485
MunI	CAATTG	2 cut(s)	84, 139
MvaI	CCWGG	2 cut(s)	240, 485
MvnI	CGCG	2 cut(s)	632, 738
NdeII	GATC	5 cut(s)	280, 685, 745, 909, 983
NlaIII	CATG	2 cut(s)	576, 758
NlaIV	GGNNCC	2 cut(s)	127, 709
NspV	TTCGAA	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	3 cut(s)	23, 80, 110
PkrI	GCNGC	1 cut(s)	568
PleI	GAGTC	2 cut(s)	64, 783
PpsI	GAGTC	2 cut(s)	64, 783
Ppu21I	YACGTR	1 cut(s)	935
Psp6I	CCWGG	2 cut(s)	238, 483
PspGI	CCWGG	2 cut(s)	238, 483
PspN4I	GGNNCC	2 cut(s)	127, 709
RsaI	GTAC	6 cut(s)	299, 480, 527, 655, 930, 937
RsaNI	GTAC	6 cut(s)	298, 479, 526, 654, 929, 936
SacII	CCGCGG	1 cut(s)	633
SaqAI	TTAA	3 cut(s)	102, 768, 1028
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	5 cut(s)	280, 685, 745, 909, 983
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	2 cut(s)	65, 784
ScrFI	CCNGG	2 cut(s)	240, 485
SetI	ASST	9 cut(s)	54, 269, 448, 453, 546, 563, 685, 937, 941
SfaNI	GCATC	3 cut(s)	304, 391, 832
Sfr303I	CCGCGG	1 cut(s)	633
SfuI	TTCGAA	1 cut(s)	340
SgrBI	CCGCGG	1 cut(s)	633
SnaBI	TACGTA	1 cut(s)	935
Sse9I	AATT	5 cut(s)	84, 139, 420, 587, 724
SsiI	CCGC	8 cut(s)	74, 89, 218, 359, 567, 630, 632, 650
StyD4I	CCNGG	2 cut(s)	238, 483
TaiI	ACGT	1 cut(s)	937
TaqI	TCGA	3 cut(s)	54, 340, 966
TasI	AATT	5 cut(s)	84, 139, 420, 587, 724
TatI	WGTACW	2 cut(s)	297, 525
TauI	GCSGC	1 cut(s)	569
TfiI	GAWTC	3 cut(s)	23, 80, 110
Tru1I	TTAA	3 cut(s)	102, 768, 1028
Tru9I	TTAA	3 cut(s)	102, 768, 1028
TscAI	CASTG	4 cut(s)	415, 802, 808, 843
TspDTI	ATGAA	3 cut(s)	54, 594, 820
TspRI	CASTG	4 cut(s)	415, 802, 808, 843
XmnI	GAANNNNTTC	1 cut(s)	696
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.