Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0015746

Physical Location & Seq

Genomic Coordinates Forward (+)

21059124 .. 21060173

Gene Structure 1050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG224200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCTACTGTAATCTCTGACCAAGATGCAGATGCAGGGGTTATCAGATCGTTTTCAGAATCAACACCATTTAGTTACATTTTAAAGGTAGAGTCCTTTTCATTGCTGGCGGATGATTCAATTGCGGGGACAAATGTTAAATGTGAATCGGGGGTCTTCGGAGCCGGAGGATACAATTGGAAACTCGTGTTCTACCCAAACGGAAACAAGAAGAAGAATGTAGAAGACCACATCTCTCTCTACTTGGTAACCGCGGGAGAGAACTCACTCCAGCCTGGTGAGGAAGTATATGTTGATTTCAGGTTATTTTTGCTTGATCAGATAAAGAGCAAGTACTTGGTTGTTGAAGATGCCAATACAAGAAACTTTTGCTTTCGAGGGGAGATGTCTGGTGCAGTCGGTTTTGATAAACTTGTCTCTCTAAGGGACTTTACTGATGCCTCCAATGGTTATCTAATTGATGATAAATGTGTGTTTGGAGCTGAGGTCTTTGTTTGTAATGGAAGAAGACCCGTACCCCAAGCAGATTGTCTATCAATAAGGAAGACTACCTCAGAGAAGTACAAGCATACTTGGAAGGTTGGGAACTTTTCAAACTTAGCCGCTCAATGCTATGAAGAACGATTCACTGCTGGAGGCCAGAAATGGAAGATAGTTCTCTATCCCCAGGGAATCGGTGATGGAAGGGGTACTTATCTCTCTCTTTATTTGTCATTAGCTAATCCAGAAGATCTTGGTGATGGCCCCAAAGTATCAACCAATTTCTGCCTGCGCATTGTAGATCAAGTACATGCACTGCACTGTACTATGAATGGTACTAATCGTATTTTCACTGGCCCTACTTGGTCTCTCGGTTGGGATGATTTCATTGCACTGGACGATTTCAGACGGGAAGACAGAGGGCTTTTGAGGGAGGATACTTGCTTTGTGGAGGCAGAGATCACGGTCAGCAGAACTGCTATGGTACTAGGTACCTTAGGCCAAAATGACACTAATTCGGAAAGATGTAAATGTCGAAAGATTTGCTCAGGGATCAAGCAGTTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

349

Amino Acids

38.9

Weight (kDa)

5.42

Isoelectric Point (pI)

21.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	25 - 163	9.6e-33	MATH domain
MATH	PF00917	49 - 165	8.3e-08	MATH domain
MATH_2	PF22486	189 - 314	1.6e-27	MATH domain
MATH	PF00917	195 - 316	1.8e-09	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015746)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0475431 RchiOBHm_Chr4g0426891 RchiOBHm_Chr4g0426901
rosa_laevigata	RLG00000007270
rosa_multiflora	Rmu_co8427477.1_g000001 Rmu_sc0016637.1_g000008
rosa_rugosa	Rorug03G0148800.1 Rorug04G0215300
rosa_samantha	Rh3AG199100 Rh3BG228900 Rh3CG223300 Rh3DG224200 Rh4AG270700 Rh4BG277000
rosa_wichuraiana	Rw4G023490 Rw4G023500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	773
Acc65I	GGTACC	1 cut(s)	971
AccB1I	GGYRCC	1 cut(s)	971
AccBSI	CCGCTC	1 cut(s)	605
AccII	CGCG	1 cut(s)	254
AciI	CCGC	5 cut(s)	110, 125, 252, 254, 603
AclWI	GGATC	1 cut(s)	1040
AfaI	GTAC	9 cut(s)	335, 516, 563, 691, 789, 805, 817, 966, 973
AgsI	TTSAA	3 cut(s)	120, 347, 594
AjnI	CCWGG	2 cut(s)	274, 666
AluBI	AGCT	2 cut(s)	482, 719
AluI	AGCT	2 cut(s)	482, 719
Alw26I	GTCTC	2 cut(s)	421, 852
AlwI	GGATC	1 cut(s)	1040
AoxI	GGCC	4 cut(s)	637, 742, 835, 979
Asp718I	GGTACC	1 cut(s)	971
AspLEI	GCGC	1 cut(s)	774
AspS9I	GGNCC	2 cut(s)	743, 836
AsuHPI	GGTGA	3 cut(s)	290, 689, 749
AxyI	CCTNAGG	1 cut(s)	976
BanI	GGYRCC	1 cut(s)	971
BauI	CACGAG	1 cut(s)	185
BbsI	GAAGAC	5 cut(s)	148, 231, 514, 551, 900
BbvCI	CCTCAGC	1 cut(s)	483
BccI	CCATC	2 cut(s)	674, 734
BcgI	CGANNNNNNTGC	2 cut(s)	1005, 1039
BciT130I	CCWGG	2 cut(s)	276, 668
BciVI	GTATCC	2 cut(s)	164, 910
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	421, 852
BfaI	CTAG	1 cut(s)	968
BfuI	GTATCC	2 cut(s)	164, 910
BglII	AGATCT	1 cut(s)	730
BisI	GCNGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	604
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	2 cut(s)	276, 668
BmgT120I	GGNCC	2 cut(s)	743, 836
BmiI	GGNNCC	3 cut(s)	163, 745, 973
BmrFI	CCNGG	2 cut(s)	276, 668
BmsI	GCATC	4 cut(s)	16, 22, 340, 427
BpiI	GAAGAC	5 cut(s)	148, 231, 514, 551, 900
BpmI	CTGGAG	2 cut(s)	254, 654
Bpu10I	CCTNAGC	2 cut(s)	483, 1027
BsaI	GGTCTC	1 cut(s)	852
BsaJI	CCNNGG	3 cut(s)	252, 666, 667
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bse1I	ACTGG	2 cut(s)	838, 879
Bse21I	CCTNAGG	1 cut(s)	976
Bse3DI	GCAATG	2 cut(s)	101, 867
BseBI	CCWGG	2 cut(s)	276, 668
BseDI	CCNNGG	3 cut(s)	252, 666, 667
BseGI	GGATG	2 cut(s)	118, 865
BseMI	GCAATG	2 cut(s)	101, 867
BseMII	CTCAG	3 cut(s)	474, 567, 1041
BseNI	ACTGG	2 cut(s)	838, 879
BsgI	GTGCAG	2 cut(s)	414, 782
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	4 cut(s)	639, 744, 837, 981
BshNI	GGYRCC	1 cut(s)	971
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	142, 440
BsmAI	GTCTC	2 cut(s)	421, 852
BsmFI	GGGAC	2 cut(s)	142, 440
BsnI	GGCC	4 cut(s)	639, 744, 837, 981
Bso31I	GGTCTC	1 cut(s)	852
Bsp143I	GATC	6 cut(s)	47, 316, 730, 781, 939, 1032
BspACI	CCGC	5 cut(s)	110, 125, 252, 254, 603
BspANI	GGCC	4 cut(s)	639, 744, 837, 981
BspCNI	CTCAG	3 cut(s)	475, 566, 1040
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	3 cut(s)	163, 745, 973
BspPI	GGATC	1 cut(s)	1040
BspT107I	GGYRCC	1 cut(s)	971
BspTNI	GGTCTC	1 cut(s)	852
BsrBI	CCGCTC	1 cut(s)	605
BsrDI	GCAATG	2 cut(s)	101, 867
BsrI	ACTGG	2 cut(s)	838, 879
BssECI	CCNNGG	3 cut(s)	252, 666, 667
BssMI	GATC	6 cut(s)	47, 316, 730, 781, 939, 1032
BssSI	CACGAG	1 cut(s)	185
Bst2BI	CACGAG	1 cut(s)	185
Bst2UI	CCWGG	2 cut(s)	276, 668
Bst4CI	ACNGT	3 cut(s)	10, 803, 946
BstC8I	GCNNGC	2 cut(s)	108, 770
BstDEI	CTNAG	6 cut(s)	422, 483, 553, 598, 976, 1027
BstDSI	CCRYGG	1 cut(s)	252
BstEII	GGTNACC	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	118, 865
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	774
BstKTI	GATC	6 cut(s)	50, 319, 733, 784, 942, 1035
BstMAI	GTCTC	2 cut(s)	421, 852
BstMBI	GATC	6 cut(s)	47, 316, 730, 781, 939, 1032
BstNI	CCWGG	2 cut(s)	276, 668
BstNSI	RCATGY	1 cut(s)	794
BstPI	GGTNACC	1 cut(s)	247
BstSCI	CCNGG	2 cut(s)	274, 666
BstUI	CGCG	1 cut(s)	254
BstV2I	GAAGAC	5 cut(s)	148, 231, 514, 551, 900
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
Bsu36I	CCTNAGG	1 cut(s)	976
BsuI	GTATCC	2 cut(s)	164, 910
BsuRI	GGCC	4 cut(s)	639, 744, 837, 981
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	118, 865
BtsI	GCAGTG	2 cut(s)	627, 794
BtsIMutI	CAGTG	5 cut(s)	627, 794, 799, 831, 872
Cac8I	GCNNGC	2 cut(s)	108, 770
CfoI	GCGC	1 cut(s)	774
Cfr13I	GGNCC	2 cut(s)	743, 836
Cfr42I	CCGCGG	1 cut(s)	255
Csp6I	GTAC	9 cut(s)	334, 515, 562, 690, 788, 804, 816, 965, 972
CviAII	CATG	1 cut(s)	791
CviQI	GTAC	9 cut(s)	334, 515, 562, 690, 788, 804, 816, 965, 972
DdeI	CTNAG	6 cut(s)	422, 483, 553, 598, 976, 1027
DpnI	GATC	6 cut(s)	49, 318, 732, 783, 941, 1034
DpnII	GATC	6 cut(s)	47, 316, 730, 781, 939, 1032
DraI	TTTAAA	1 cut(s)	84
EciI	GGCGGA	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	852
Eco81I	CCTNAGG	1 cut(s)	976
Eco91I	GGTNACC	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	247
EcoRII	CCWGG	2 cut(s)	274, 666
FaeI	CATG	1 cut(s)	794
FaiI	YATR	8 cut(s)	289, 291, 570, 615, 792, 809, 962, 1046
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FaqI	GGGAC	2 cut(s)	142, 440
FatI	CATG	1 cut(s)	790
FauI	CCCGC	2 cut(s)	118, 247
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	603
FokI	GGATG	2 cut(s)	125, 872
Fsp4HI	GCNGC	1 cut(s)	603
FspBI	CTAG	1 cut(s)	968
FspI	TGCGCA	1 cut(s)	773
GlaI	GCGC	1 cut(s)	773
GluI	GCNGC	1 cut(s)	603
GsuI	CTGGAG	2 cut(s)	254, 654
HaeIII	GGCC	4 cut(s)	639, 744, 837, 981
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	1 cut(s)	774
Hin1II	CATG	1 cut(s)	794
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HinfI	GANTC	6 cut(s)	59, 92, 116, 146, 624, 672
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	3 cut(s)	290, 689, 749
Hpy188I	TCNGA	8 cut(s)	19, 47, 58, 161, 321, 556, 887, 1000
Hpy188III	TCNNGA	1 cut(s)	725
HpyAV	CCTTC	2 cut(s)	571, 678
HpyCH4III	ACNGT	3 cut(s)	10, 803, 946
HpyCH4V	TGCA	6 cut(s)	29, 35, 395, 794, 799, 872
HpyF3I	CTNAG	6 cut(s)	422, 483, 553, 598, 976, 1027
Hsp92II	CATG	1 cut(s)	794
HspAI	GCGC	1 cut(s)	772
KpnI	GGTACC	1 cut(s)	975
Ksp22I	TGATCA	1 cut(s)	316
KspI	CCGCGG	1 cut(s)	255
Kzo9I	GATC	6 cut(s)	47, 316, 730, 781, 939, 1032
LmnI	GCTCC	2 cut(s)	161, 479
LweI	GCATC	4 cut(s)	16, 22, 340, 427
MaeI	CTAG	1 cut(s)	968
MaeIII	GTNAC	2 cut(s)	74, 247
MalI	GATC	6 cut(s)	49, 318, 732, 783, 941, 1034
MbiI	CCGCTC	1 cut(s)	605
MboI	GATC	6 cut(s)	47, 316, 730, 781, 939, 1032
MfeI	CAATTG	2 cut(s)	120, 175
MflI	RGATCY	1 cut(s)	730
MluCI	AATT	5 cut(s)	120, 175, 456, 760, 994
MlyI	GAGTC	1 cut(s)	101
MseI	TTAA	2 cut(s)	83, 138
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	276, 668
MunI	CAATTG	2 cut(s)	120, 175
MvaI	CCWGG	2 cut(s)	276, 668
MvnI	CGCG	1 cut(s)	254
NdeII	GATC	6 cut(s)	47, 316, 730, 781, 939, 1032
NlaIII	CATG	1 cut(s)	794
NlaIV	GGNNCC	3 cut(s)	163, 745, 973
NsbI	TGCGCA	1 cut(s)	773
NspI	RCATGY	1 cut(s)	794
PasI	CCCWGGG	1 cut(s)	667
PfeI	GAWTC	5 cut(s)	59, 116, 146, 624, 672
PkrI	GCNGC	1 cut(s)	604
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	2 cut(s)	274, 666
PspEI	GGTNACC	1 cut(s)	247
PspGI	CCWGG	2 cut(s)	274, 666
PspN4I	GGNNCC	3 cut(s)	163, 745, 973
PspPI	GGNCC	2 cut(s)	743, 836
PsuI	RGATCY	1 cut(s)	730
RsaI	GTAC	9 cut(s)	335, 516, 563, 691, 789, 805, 817, 966, 973
RsaNI	GTAC	9 cut(s)	334, 515, 562, 690, 788, 804, 816, 965, 972
SacII	CCGCGG	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	83, 138
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	6 cut(s)	47, 316, 730, 781, 939, 1032
Sau96I	GGNCC	2 cut(s)	743, 836
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	276, 668
SetI	ASST	9 cut(s)	90, 305, 484, 489, 554, 582, 721, 973, 977
SfaNI	GCATC	4 cut(s)	16, 22, 340, 427
Sfr303I	CCGCGG	1 cut(s)	255
SgrBI	CCGCGG	1 cut(s)	255
Sse9I	AATT	5 cut(s)	120, 175, 456, 760, 994
SsiI	CCGC	5 cut(s)	110, 125, 252, 254, 603
SspMI	CTAG	1 cut(s)	968
StyD4I	CCNGG	2 cut(s)	274, 666
TaaI	ACNGT	3 cut(s)	10, 803, 946
TaqI	TCGA	2 cut(s)	376, 1015
TasI	AATT	5 cut(s)	120, 175, 456, 760, 994
TatI	WGTACW	4 cut(s)	333, 561, 787, 803
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	5 cut(s)	59, 116, 146, 624, 672
Tru1I	TTAA	2 cut(s)	83, 138
Tru9I	TTAA	2 cut(s)	83, 138
TscAI	CASTG	5 cut(s)	634, 801, 806, 838, 879
TspDTI	ATGAA	4 cut(s)	90, 630, 824, 856
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	5 cut(s)	634, 801, 806, 838, 879
XceI	RCATGY	1 cut(s)	794
XspI	CTAG	1 cut(s)	968
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.