Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8427477.1

Orthogroup ID

OG0015746

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 816

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8427477.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 815 bp

atggctactgtagtctctgaccaagatgcagatgcaggggttatcagatcgttttcagaatcaacaccatttagttacattttaaaggtagagtccttttcattgctggcggatgattcaattgcggagacaaatgttaaatgtgaatcgggggtcttcggagccggaggatacaattggaaactcgtgttctacccaaatggaaacaagaagaagaatgtagaagaccacatctctctctacttggtaaccgcgggagagaactcactccagcctggtgaggaagtatatgttgatttcaggttatttttgcttgatcagataaagagcaagtacttggttgttgaagatgccaatacaagaaacttttgctttcgaggggagatgtctggtgcggtcggttttgataaacttgtctctctaagggactttactgatgcctccaatggttatctaattgatgataaatgtgtgtttggagctgaggtctttgtttgtaatggaagaagacccgtaccacaagcagattgtctatcaataaggaagactacctcaaagtacaagcatacttggaaggttgggaacttttcaaacttagccgctcaatgctatgaagaacgattcactgctggaggccagaaatggaagataattctctatcccgagggagacggtgatggaacgggtactcatctctctctttatttgtcattagctgatccagaagatcttgatggcaccaaagtatcaaccaatttctgcctgcgcctcgtagatcaagtacatgcaatgcactgtactaggaatgatagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

271

Amino Acids

30.08

Weight (kDa)

5.1

Isoelectric Point (pI)

27.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015746)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0475431 RchiOBHm_Chr4g0426891 RchiOBHm_Chr4g0426901
rosa_laevigata	RLG00000007270
rosa_multiflora	Rmu_co8427477.1_g000001 Rmu_sc0016637.1_g000008
rosa_rugosa	Rorug03G0148800.1 Rorug04G0215300
rosa_samantha	Rh3AG199100 Rh3BG228900 Rh3CG223300 Rh3DG224200 Rh4AG270700 Rh4BG277000
rosa_wichuraiana	Rw4G023490 Rw4G023500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	737
AccBSI	CCGCTC	1 cut(s)	602
AccII	CGCG	1 cut(s)	254
AciI	CCGC	6 cut(s)	110, 125, 252, 254, 395, 600
AclWI	GGATC	1 cut(s)	713
AfaI	GTAC	6 cut(s)	335, 516, 560, 688, 783, 799
AgsI	TTSAA	3 cut(s)	120, 347, 591
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	2 cut(s)	482, 716
AluI	AGCT	2 cut(s)	482, 716
Alw26I	GTCTC	4 cut(s)	19, 122, 421, 663
AlwI	GGATC	1 cut(s)	713
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	1 cut(s)	634
AspLEI	GCGC	1 cut(s)	768
AsuHPI	GGTGA	2 cut(s)	290, 686
AvaI	CYCGRG	1 cut(s)	662
BaeI	ACNNNNGTAYC	2 cut(s)	729, 762
BanI	GGYRCC	1 cut(s)	737
BauI	CACGAG	1 cut(s)	185
BbsI	GAAGAC	4 cut(s)	148, 231, 514, 551
BbvCI	CCTCAGC	1 cut(s)	483
BccI	CCATC	2 cut(s)	671, 728
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	4 cut(s)	19, 122, 421, 663
BfaI	CTAG	1 cut(s)	801
BfmI	CTRYAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	1 cut(s)	600
BlsI	GCNGC	1 cut(s)	601
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	662
BmiI	GGNNCC	2 cut(s)	163, 739
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	4 cut(s)	16, 22, 340, 427
BpiI	GAAGAC	4 cut(s)	148, 231, 514, 551
BpmI	CTGGAG	2 cut(s)	254, 651
Bpu10I	CCTNAGC	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	252, 663
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bse3DI	GCAATG	2 cut(s)	101, 795
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	252, 663
BseGI	GGATG	1 cut(s)	118
BseMI	GCAATG	2 cut(s)	101, 795
BseMII	CTCAG	1 cut(s)	474
Bsh1236I	CGCG	1 cut(s)	254
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	636
BshNI	GGYRCC	1 cut(s)	737
BsiEI	CGRYCG	1 cut(s)	399
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	440
BsmAI	GTCTC	4 cut(s)	19, 122, 421, 663
BsmBI	CGTCTC	1 cut(s)	663
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	636
BsoBI	CYCGRG	1 cut(s)	662
Bsp143I	GATC	5 cut(s)	47, 316, 718, 727, 775
BspACI	CCGC	6 cut(s)	110, 125, 252, 254, 395, 600
BspANI	GGCC	1 cut(s)	636
BspCNI	CTCAG	1 cut(s)	475
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	163, 739
BspPI	GGATC	1 cut(s)	713
BspT107I	GGYRCC	1 cut(s)	737
BsrBI	CCGCTC	1 cut(s)	602
BsrDI	GCAATG	2 cut(s)	101, 795
BssECI	CCNNGG	2 cut(s)	252, 663
BssMI	GATC	5 cut(s)	47, 316, 718, 727, 775
BssSI	CACGAG	1 cut(s)	185
Bst2BI	CACGAG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	10, 674, 797
BstC8I	GCNNGC	2 cut(s)	108, 764
BstDEI	CTNAG	3 cut(s)	422, 483, 595
BstDSI	CCRYGG	1 cut(s)	252
BstEII	GGTNACC	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	768
BstKTI	GATC	5 cut(s)	50, 319, 721, 730, 778
BstMAI	GTCTC	4 cut(s)	19, 122, 421, 663
BstMBI	GATC	5 cut(s)	47, 316, 718, 727, 775
BstMCI	CGRYCG	1 cut(s)	399
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	788
BstPI	GGTNACC	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	254
BstV2I	GAAGAC	4 cut(s)	148, 231, 514, 551
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	636
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	2 cut(s)	624, 793
Cac8I	GCNNGC	2 cut(s)	108, 764
CfoI	GCGC	1 cut(s)	768
Cfr42I	CCGCGG	1 cut(s)	255
Csp6I	GTAC	6 cut(s)	334, 515, 559, 687, 782, 798
CviAII	CATG	1 cut(s)	785
CviJI	RGCY	7 cut(s)	5, 164, 274, 482, 599, 636, 716
CviKI_1	RGCY	7 cut(s)	5, 164, 274, 482, 599, 636, 716
CviQI	GTAC	6 cut(s)	334, 515, 559, 687, 782, 798
DdeI	CTNAG	3 cut(s)	422, 483, 595
DpnI	GATC	5 cut(s)	49, 318, 720, 729, 777
DpnII	GATC	5 cut(s)	47, 316, 718, 727, 775
DraI	TTTAAA	1 cut(s)	84
EciI	GGCGGA	1 cut(s)	125
Eco88I	CYCGRG	1 cut(s)	662
Eco91I	GGTNACC	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	663
FaeI	CATG	1 cut(s)	788
FaiI	YATR	5 cut(s)	289, 291, 567, 612, 786
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	1 cut(s)	784
FauI	CCCGC	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	600
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	600
FspBI	CTAG	1 cut(s)	801
GlaI	GCGC	1 cut(s)	767
GluI	GCNGC	1 cut(s)	600
GsuI	CTGGAG	2 cut(s)	254, 651
HaeIII	GGCC	1 cut(s)	636
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	1 cut(s)	768
Hin1II	CATG	1 cut(s)	788
Hin6I	GCGC	1 cut(s)	766
HinP1I	GCGC	1 cut(s)	766
HinfI	GANTC	5 cut(s)	59, 92, 116, 146, 621
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	2 cut(s)	290, 686
Hpy188I	TCNGA	5 cut(s)	19, 47, 58, 161, 321
Hpy188III	TCNNGA	3 cut(s)	662, 722, 731
HpyAV	CCTTC	1 cut(s)	568
HpyCH4III	ACNGT	3 cut(s)	10, 674, 797
HpyCH4V	TGCA	4 cut(s)	29, 35, 788, 793
HpyF3I	CTNAG	3 cut(s)	422, 483, 595
Hsp92II	CATG	1 cut(s)	788
HspAI	GCGC	1 cut(s)	766
Ksp22I	TGATCA	1 cut(s)	316
KspI	CCGCGG	1 cut(s)	255
Kzo9I	GATC	5 cut(s)	47, 316, 718, 727, 775
LmnI	GCTCC	2 cut(s)	161, 479
LweI	GCATC	4 cut(s)	16, 22, 340, 427
MaeI	CTAG	1 cut(s)	801
MaeIII	GTNAC	2 cut(s)	74, 247
MalI	GATC	5 cut(s)	49, 318, 720, 729, 777
MbiI	CCGCTC	1 cut(s)	602
MboI	GATC	5 cut(s)	47, 316, 718, 727, 775
MfeI	CAATTG	2 cut(s)	120, 175
MflI	RGATCY	1 cut(s)	727
MluCI	AATT	5 cut(s)	120, 175, 456, 651, 754
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	9 cut(s)	161, 274, 371, 451, 478, 562, 626, 658, 779
MseI	TTAA	2 cut(s)	83, 138
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	2 cut(s)	120, 175
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	254
NdeII	GATC	5 cut(s)	47, 316, 718, 727, 775
NlaIII	CATG	1 cut(s)	788
NlaIV	GGNNCC	2 cut(s)	163, 739
NspI	RCATGY	1 cut(s)	788
PfeI	GAWTC	4 cut(s)	59, 116, 146, 621
PkrI	GCNGC	1 cut(s)	601
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	163, 739
PsuI	RGATCY	1 cut(s)	727
RsaI	GTAC	6 cut(s)	335, 516, 560, 688, 783, 799
RsaNI	GTAC	6 cut(s)	334, 515, 559, 687, 782, 798
SacII	CCGCGG	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	83, 138
SatI	GCNGC	1 cut(s)	600
Sau3AI	GATC	5 cut(s)	47, 316, 718, 727, 775
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	7 cut(s)	90, 305, 484, 489, 554, 579, 718
SfaNI	GCATC	4 cut(s)	16, 22, 340, 427
SfcI	CTRYAG	1 cut(s)	9
Sfr303I	CCGCGG	1 cut(s)	255
SgrBI	CCGCGG	1 cut(s)	255
Sse9I	AATT	5 cut(s)	120, 175, 456, 651, 754
SsiI	CCGC	6 cut(s)	110, 125, 252, 254, 395, 600
SspMI	CTAG	1 cut(s)	801
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	3 cut(s)	10, 674, 797
TaqI	TCGA	1 cut(s)	376
TasI	AATT	5 cut(s)	120, 175, 456, 651, 754
TatI	WGTACW	4 cut(s)	333, 558, 781, 797
TauI	GCSGC	1 cut(s)	602
TfiI	GAWTC	4 cut(s)	59, 116, 146, 621
Tru1I	TTAA	2 cut(s)	83, 138
Tru9I	TTAA	2 cut(s)	83, 138
TscAI	CASTG	2 cut(s)	631, 800
TspDTI	ATGAA	2 cut(s)	90, 627
TspRI	CASTG	2 cut(s)	631, 800
XceI	RCATGY	1 cut(s)	788
XspI	CTAG	1 cut(s)	801
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.