Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0015746

Physical Location & Seq

Genomic Coordinates Forward (+)

49089874 .. 49091931

Gene Structure 2058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G023500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTATCTTAGTCTCTGACCAAGATGCAGATGCAGGAGTTTTCAGATCGTTTTCAGAATCAACACCATTTAGTTACATTCTAAAGGTCGAGTCCTTTTCATTGCTGACGGATGATTCAGTTGCGGAGACAAAAGTTAAATGTGAATCAGGGGTCTTCGGAGCTGGAGGATACAATTGGAAACTCGTGTTCTACCCAAAAGGAAACAAGAAGAAGAATGTAAACGACCACATCTCTCTCTACTTGGTAATGGCGGGGGAGAACTCACTCCAGCCTGGTGAGGAAGTATATGTTGATTTCAAGTTATTTTTGCTTGATCAGATAAAGAGCAAGTACTTGGTTGTTGAAGATGCTTTTACAAGGAACTTTTGCTTTCGAAGGGAGATGTCTGGTGCGGTCGGTTTTGATAAACTTGTCTCTCTAAGGGACTTTACTGATGCCTCCAGTGGTTATCTAATTGATGATAAATGTGTGTTTGGAGCTGAGGTCTTTGTTTGTAATGAAAGAAGACCCGTACCCCAAGCAGATTGTCTATCAATAAGGAAGACTACTTCACAGAAGTACAAGCATACTTGGAAGGTTAGGAACTTTTCAAGCTTAGCCGCTCCATGTTATGAAGAACGATTTACGGCTGCAGGCCAGAAATGGAAGATAACTCTCTATCCCACGGGGCATGGTGCTGGAGCGGGTACTCATCTCAGTCTTTTTCTGGCATTAGCTGATCCAGAAAATCTTCCTGATGGCACCAAAATATCTACCAATTATTGCCTGCGCGTTGTAGATCAAATACATGGGCATTGTATTAAAAATAGTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

272

Amino Acids

30.33

Weight (kDa)

6.99

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	25 - 163	4.7e-33	MATH domain
MATH	PF00917	46 - 165	1.1e-08	MATH domain
MATH_2	PF22486	189 - 264	1.1e-16	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015746)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0475431 RchiOBHm_Chr4g0426891 RchiOBHm_Chr4g0426901
rosa_laevigata	RLG00000007270
rosa_multiflora	Rmu_co8427477.1_g000001 Rmu_sc0016637.1_g000008
rosa_rugosa	Rorug03G0148800.1 Rorug04G0215300
rosa_samantha	Rh3AG199100 Rh3BG228900 Rh3CG223300 Rh3DG224200 Rh4AG270700 Rh4BG277000
rosa_wichuraiana	Rw4G023490 Rw4G023500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	743
AccBSI	CCGCTC	2 cut(s)	605, 686
AccII	CGCG	1 cut(s)	774
AciI	CCGC	5 cut(s)	125, 254, 395, 603, 686
AclWI	GGATC	1 cut(s)	716
AfaI	GTAC	4 cut(s)	335, 516, 563, 691
AgsI	TTSAA	3 cut(s)	301, 347, 594
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	4 cut(s)	164, 482, 597, 719
AluI	AGCT	4 cut(s)	164, 482, 597, 719
Alw26I	GTCTC	3 cut(s)	19, 122, 421
AlwI	GGATC	1 cut(s)	716
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	1 cut(s)	632
Asp700I	GAANNNNTTC	1 cut(s)	732
AspLEI	GCGC	1 cut(s)	774
AsuHPI	GGTGA	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	743
BauI	CACGAG	1 cut(s)	185
BbsI	GAAGAC	3 cut(s)	148, 514, 551
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	1 cut(s)	734
BceAI	ACGGC	1 cut(s)	645
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	3 cut(s)	19, 122, 421
BfmI	CTRYAG	1 cut(s)	633
BfuI	GTATCC	1 cut(s)	164
BisI	GCNGC	2 cut(s)	603, 633
BlpI	GCTNAGC	1 cut(s)	598
BlsI	GCNGC	2 cut(s)	604, 634
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	745
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	4 cut(s)	16, 22, 340, 427
BpiI	GAAGAC	3 cut(s)	148, 514, 551
BpmI	CTGGAG	4 cut(s)	186, 254, 427, 702
Bpu10I	CCTNAGC	1 cut(s)	483
Bpu1102I	GCTNAGC	1 cut(s)	598
Bpu14I	TTCGAA	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	666
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bse1I	ACTGG	1 cut(s)	444
Bse3DI	GCAATG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	2 cut(s)	474, 712
BseNI	ACTGG	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	619
Bsh1236I	CGCG	1 cut(s)	774
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	639
BshNI	GGYRCC	1 cut(s)	743
BsiEI	CGRYCG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	440
BsmAI	GTCTC	3 cut(s)	19, 122, 421
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	639
Bsp119I	TTCGAA	1 cut(s)	376
Bsp143I	GATC	4 cut(s)	47, 316, 721, 781
Bsp1720I	GCTNAGC	1 cut(s)	598
BspACI	CCGC	5 cut(s)	125, 254, 395, 603, 686
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	2 cut(s)	475, 711
BspFNI	CGCG	1 cut(s)	774
BspLI	GGNNCC	1 cut(s)	745
BspMAI	CTGCAG	1 cut(s)	637
BspPI	GGATC	1 cut(s)	716
BspT104I	TTCGAA	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	743
BsrBI	CCGCTC	2 cut(s)	605, 686
BsrDI	GCAATG	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	4 cut(s)	47, 316, 721, 781
BssSI	CACGAG	1 cut(s)	185
Bst2BI	CACGAG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	276
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	637, 770
BstDEI	CTNAG	5 cut(s)	10, 422, 483, 598, 698
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	774
BstHHI	GCGC	1 cut(s)	774
BstKTI	GATC	4 cut(s)	50, 319, 724, 784
BstMAI	GTCTC	3 cut(s)	19, 122, 421
BstMBI	GATC	4 cut(s)	47, 316, 721, 781
BstMCI	CGRYCG	1 cut(s)	399
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	633
BstUI	CGCG	1 cut(s)	774
BstV1I	GCAGC	1 cut(s)	619
BstV2I	GAAGAC	3 cut(s)	148, 514, 551
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	639
BtgI	CCRYGG	1 cut(s)	666
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	451
Cac8I	GCNNGC	2 cut(s)	637, 770
CfoI	GCGC	1 cut(s)	774
Csp6I	GTAC	4 cut(s)	334, 515, 562, 690
CviAII	CATG	3 cut(s)	609, 674, 791
CviJI	RGCY	9 cut(s)	5, 164, 274, 482, 597, 602, 632, 639, 719
CviKI_1	RGCY	9 cut(s)	5, 164, 274, 482, 597, 602, 632, 639, 719
CviQI	GTAC	4 cut(s)	334, 515, 562, 690
DdeI	CTNAG	5 cut(s)	10, 422, 483, 598, 698
DpnI	GATC	4 cut(s)	49, 318, 723, 783
DpnII	GATC	4 cut(s)	47, 316, 721, 781
EcoRII	CCWGG	1 cut(s)	274
FaeI	CATG	3 cut(s)	612, 677, 794
FaiI	YATR	7 cut(s)	289, 291, 570, 610, 615, 675, 792
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	3 cut(s)	608, 673, 790
FauI	CCCGC	2 cut(s)	247, 679
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	603, 633
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	603, 633
GlaI	GCGC	1 cut(s)	773
GluI	GCNGC	2 cut(s)	603, 633
GsuI	CTGGAG	4 cut(s)	186, 254, 427, 702
HaeIII	GGCC	1 cut(s)	639
HhaI	GCGC	1 cut(s)	774
Hin1II	CATG	3 cut(s)	612, 677, 794
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	4 cut(s)	59, 92, 116, 146
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	5 cut(s)	19, 47, 58, 161, 321
Hpy188III	TCNNGA	2 cut(s)	725, 737
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	372, 571
HpyCH4V	TGCA	3 cut(s)	29, 35, 635
HpyF3I	CTNAG	5 cut(s)	10, 422, 483, 598, 698
Hsp92II	CATG	3 cut(s)	612, 677, 794
HspAI	GCGC	1 cut(s)	772
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	47, 316, 721, 781
LmnI	GCTCC	4 cut(s)	161, 479, 610, 683
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	4 cut(s)	16, 22, 340, 427
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	4 cut(s)	49, 318, 723, 783
MbiI	CCGCTC	2 cut(s)	605, 686
MboI	GATC	4 cut(s)	47, 316, 721, 781
MboII	GAAGA	9 cut(s)	148, 223, 226, 359, 519, 556, 629, 661, 725
MfeI	CAATTG	1 cut(s)	175
MluCI	AATT	3 cut(s)	175, 456, 760
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	4 cut(s)	161, 274, 451, 478
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	2 cut(s)	138, 804
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	774
NdeII	GATC	4 cut(s)	47, 316, 721, 781
NlaIII	CATG	3 cut(s)	612, 677, 794
NlaIV	GGNNCC	1 cut(s)	745
NspV	TTCGAA	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	3 cut(s)	59, 116, 146
PkrI	GCNGC	2 cut(s)	604, 634
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	745
PstI	CTGCAG	1 cut(s)	637
RsaI	GTAC	4 cut(s)	335, 516, 563, 691
RsaNI	GTAC	4 cut(s)	334, 515, 562, 690
SaqAI	TTAA	2 cut(s)	138, 804
SatI	GCNGC	2 cut(s)	603, 633
Sau3AI	GATC	4 cut(s)	47, 316, 721, 781
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	7 cut(s)	90, 166, 484, 489, 582, 599, 721
SfaNI	GCATC	4 cut(s)	16, 22, 340, 427
SfcI	CTRYAG	1 cut(s)	633
SfuI	TTCGAA	1 cut(s)	376
Sse9I	AATT	3 cut(s)	175, 456, 760
SsiI	CCGC	5 cut(s)	125, 254, 395, 603, 686
StyD4I	CCNGG	1 cut(s)	274
TaqI	TCGA	2 cut(s)	90, 376
TasI	AATT	3 cut(s)	175, 456, 760
TatI	WGTACW	2 cut(s)	333, 561
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	3 cut(s)	59, 116, 146
Tru1I	TTAA	2 cut(s)	138, 804
Tru9I	TTAA	2 cut(s)	138, 804
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	1 cut(s)	632
TspDTI	ATGAA	3 cut(s)	90, 516, 630
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	732
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.